mRNA_P-wetherbeei_contig14392.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14392.1.1
Unique NamemRNA_P-wetherbeei_contig14392.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A7S2XW72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW72_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.210e-46
Identity = 74/138 (53.62%), Postives = 102/138 (73.91%), Query Frame = 1
Query:    7 FFYQVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIF 420
            + +QVADHC IY LIAGSY+PF ++ L+H    +V+++  W+AA+ GC+FSM+SDL   ST  VE+ F+LAMGL+V  VW ++   L  E + LLV GGAAY+ G++FF  GNT+PIYHTVWHVFVM+ S  HW+ ++
Sbjct:   30 YIFQVADHCGIYILIAGSYSPFCMIALHHEMAGQVLIILLWVAAMCGCLFSMSSDLNAASTEKVEVFFFLAMGLSVGFVWGKIVSALSAEALNLLVFGGAAYIIGIVFFKIGNTIPIYHTVWHVFVMIGSGSHWYCVY 167          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.570e-46
Identity = 82/142 (57.75%), Postives = 104/142 (73.24%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFVVHAP 441
            Q+ADH AIY LIAGSYTPF+++GL+   +  VV+V EW+AAL G +FS++ DL   STM VEL  YL MGLAV  +W +V      + + LLVGGGAAYV GV+FFV G T+PIYH  WH+FV+VAS MHWFAI+ ++  AP
Sbjct:  289 QIADHVAIYLLIAGSYTPFLMIGLHGSTIGGVVVVVEWVAALVGSIFSISCDLKSSSTMVVELTLYLGMGLAVLTMWTEVAAAFVPQCLYLLVGGGAAYVVGVVFFVIGETIPIYHVFWHLFVIVASCMHWFAIYLYLAGAP 430          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A6V1P304_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P304_HETAK)

HSP 1 Score: 135 bits (341), Expect = 3.150e-35
Identity = 62/138 (44.93%), Postives = 94/138 (68.12%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFV 429
            ++ DHCAIY LIAG+Y+P M++GL H P A VV++ EWL    GCVFS++  L  + +  VE+  YL MGL V  VWP+ +  +P   + L+  GG  Y+ G++F+V     PI+H+VWH+FV++AS +HWF+++ +V
Sbjct:  299 KICDHCAIYTLIAGTYSPLMMIGLRHSPTAVVVVIMEWLLCFLGCVFSISVPLGTRLSRVVEMTVYLVMGLMVLAVWPEFKTAIPAPAVELVKWGGVVYITGILFYVLDKKKPIFHSVWHMFVLIASILHWFSVYKYV 436          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC)

HSP 1 Score: 134 bits (337), Expect = 3.210e-34
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASD---LFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFVV 432
            Q+ DH  IY LIAGSY+P M++ L+H   A ++L+ EWL A GG   S+AS    +  ++T  VE+  +L MG A F +W  +  NLP   + LLVGGG AY+ GV+FF+ G   PIYH VWH+FVM+ S +HW  ++ FVV
Sbjct:  371 QILDHVGIYLLIAGSYSPIMMIALHHSHRANLLLLLEWLTAFGGICVSIASSGVGVSNQATNLVEVFIFLGMGCAAFGIWDDLVANLPATALYLLVGGGMAYIIGVVFFILGEIKPIYHMVWHMFVMLGSLLHWLCVYHFVV 512          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A7S3MG12_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG12_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.910e-34
Identity = 68/139 (48.92%), Postives = 88/139 (63.31%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFVV 432
            QV DH  IY +IAGS TPFMLV L+H   ARV++  EW+AA  G VF+  SDL       VEL  ++ MG     VW Q+   L    + LL+ G A YV G+ FF+ G   PIYH VWH+FV+VA+A+HWF ++FF+V
Sbjct:  283 QVLDHVGIYLVIAGSMTPFMLVALHHHTAARVLICGEWIAAFLGSVFAACSDLNNPRHTMVELTIFVLMGAGFLLVWEQLLQELSAPAMTLLILGNACYVVGIAFFILGEYKPIYHCVWHLFVVVAAALHWFCVYFFIV 421          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: C9P945_VIBME (Uncharacterized protein n=10 Tax=Vibrio TaxID=662 RepID=C9P945_VIBME)

HSP 1 Score: 101 bits (252), Expect = 7.730e-24
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFV 429
            +V DHCAIY LIAGSYTPF+LV L   P+A  ++V  W  AL G +  +A   F +      L  YL+MG     V  Q+  NLP   +LLL  GG  Y  GVIF+VA   +P +H +WHVFV+V  A H+ AI+F+V
Sbjct:   94 KVFDHCAIYLLIAGSYTPFLLVSL-RTPLAIGLMVIIWSIALAGIIMKIA---FMQRFKRFSLFSYLSMGWLSLIVIYQLTANLPLGGLLLLALGGLIYSLGVIFYVA-KRIPYHHAIWHVFVLVGCACHFLAIYFYV 226          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A812N5L5_SYMPI (YqfA protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812N5L5_SYMPI)

HSP 1 Score: 101 bits (251), Expect = 7.770e-24
Identity = 63/138 (45.65%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   16 QVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQ--KSTMYV--ELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAI 417
            QV DH AIYFLIAG+YTPF+L      P+   +L AEW+    G V  + S  F+  KS  Y+  ELL YLAMG A    W    + LP      L+ GG  Y  GV FFV  +  PIYH +WH+FV  A+  HWFA+
Sbjct:    7 QVLDHAAIYFLIAGTYTPFLLF-YSDTPMHADLLKAEWILCWLGIVTHICSQYFEWGKSVPYLTGELLLYLAMGWAAVLAWDTFINQLPGACWSWLMAGGLLYTAGVPFFVLADYRPIYHVIWHLFVAFAAICHWFAV 143          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A432XT68_9GAMM (Hemolysin III n=1 Tax=Pseudidiomarina halophila TaxID=1449799 RepID=A0A432XT68_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 5.280e-23
Identity = 63/148 (42.57%), Postives = 91/148 (61.49%), Query Frame = 1
Query:    1 MKFFYQVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMG-LAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFVVHAP 441
            +K F+Q  DH AIYFLIAG+YTPF LV L   P    +L   W  AL G V  +     +K   ++ L  YL +G +AV  + P + DN+    ++LLVGGG AY FGVIF+V   ++  +H +WH+FV+  S +H+F+IF++V+  P
Sbjct:   79 VKSFFQHMDHAAIYFLIAGTYTPFALVNLRG-PWGWTLLGVAWGIALIGVVLELTQ---KKRRKWLSLSLYLGLGWMAVLAIKPMI-DNVDVGGLMLLVGGGLAYSFGVIFYV-WKSLKYHHAIWHLFVLAGSVLHFFSIFYYVLPQP 220          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A2G8EKK9_9GAMM (Hemolysin III family protein n=1 Tax=Erwinia sp. OLSSP12 TaxID=1912096 RepID=A0A2G8EKK9_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 6.510e-23
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   25 DHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMG-LAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFV 429
            DHCAIY LIAG+YTPF+LVGL    +A ++LV  WL AL G +F +    F      + L+ YL MG L++  V+       PW V LL +GG   Y  GVIF+ A   +P  H +WH FV+ ASA H+FAI+ +V
Sbjct:   87 DHCAIYLLIAGTYTPFLLVGLRS-RLAHILLVVVWLLALLGVIFKLV---FAHRFKALSLITYLVMGWLSLIMVYQLAMKLSPWSVALLAIGG-VVYSLGVIFY-ANERIPYNHAIWHGFVLAASACHFFAIYLYV 216          
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Match: A0A1S8YKC3_9GAMM (Hemolysin III family protein n=1 Tax=Izhakiella australiensis TaxID=1926881 RepID=A0A1S8YKC3_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 9.170e-23
Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   25 DHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGCVFSMASDLFQKSTMYVELLFYLAMG-LAVFCVWPQVRDNLPWEVILLLVGGGAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFV 429
            DHCAIY LIAG+YTPF+LVGL    +A V+LV  WL AL G +F M    F      + L+ YLAMG L++  V+       PW V LL +GG   Y  GVIF+ A   +P  H +WH FV+  SA H+FAI+ +V
Sbjct:   87 DHCAIYLLIAGTYTPFLLVGLKS-TLAHVLLVVVWLLALMGVIFKMV---FAHRFKALSLITYLAMGWLSLIMVYQLAMKLSPWSVWLLAIGG-VIYSLGVIFY-AIERIPYNHAIWHAFVLGGSASHFFAIYLYV 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14392.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XW72_9STRA3.210e-4653.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZJF6_9STRA4.570e-4657.75Inner membrane leucine rich repeat protein n=1 Tax... [more]
A0A6V1P304_HETAK3.150e-3544.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YVT8_NANGC3.210e-3447.18Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S3MG12_9STRA5.910e-3448.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
C9P945_VIBME7.730e-2446.38Uncharacterized protein n=10 Tax=Vibrio TaxID=662 ... [more]
A0A812N5L5_SYMPI7.770e-2445.65YqfA protein n=1 Tax=Symbiodinium pilosum TaxID=29... [more]
A0A432XT68_9GAMM5.280e-2342.57Hemolysin III n=1 Tax=Pseudidiomarina halophila Ta... [more]
A0A2G8EKK9_9GAMM6.510e-2345.59Hemolysin III family protein n=1 Tax=Erwinia sp. O... [more]
A0A1S8YKC3_9GAMM9.170e-2347.06Hemolysin III family protein n=1 Tax=Izhakiella au... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14392contigP-wetherbeei_contig14392:164..1235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog675813.VIB_003040
Preferred namehlyIII
PFAMsHlyIII
Model size441
Max annot lvl135623|Vibrionales
KEGG koko:K11068
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.27e-24
EggNOG OGsCOG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria,1RR4R@1236|Gammaproteobacteria,1XT5P@135623|Vibrionales
Ec32 ortholog descriptionHypothetical inner membrane leucine rich repeat protein
Ec32 orthologEc-07_003800.1
Descriptionmembrane protein, hemolysin III
Cds size441
COG categoryS
BRITEko00000,ko02042
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.268721-CDS-P-wetherbeei_contig14392:163..3431683186020.268721-CDS-P-wetherbeei_contig14392:163..343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14392 164..343 +
1683186020.2776847-CDS-P-wetherbeei_contig14392:599..6711683186020.2776847-CDS-P-wetherbeei_contig14392:599..671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14392 600..671 +
1683186020.2851732-CDS-P-wetherbeei_contig14392:1046..12351683186020.2851732-CDS-P-wetherbeei_contig14392:1046..1235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14392 1047..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14392.1.1prot_P-wetherbeei_contig14392.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14392 164..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14392.1.1

>prot_P-wetherbeei_contig14392.1.1 ID=prot_P-wetherbeei_contig14392.1.1|Name=mRNA_P-wetherbeei_contig14392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MKFFYQVADHCAIYFLIAGSYTPFMLVGLYHLPVARVVLVAEWLAALGGC
VFSMASDLFQKSTMYVELLFYLAMGLAVFCVWPQVRDNLPWEVILLLVGG
GAAYVFGVIFFVAGNTVPIYHTVWHVFVMVASAMHWFAIFFFVVHAP
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mRNA from alignment at P-wetherbeei_contig14392:164..1235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14392.1.1 ID=mRNA_P-wetherbeei_contig14392.1.1|Name=mRNA_P-wetherbeei_contig14392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1072bp|location=Sequence derived from alignment at P-wetherbeei_contig14392:164..1235+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATTCTTTTATCAGGTGGCGGACCACTGCGCCATCTACTTTCTGAT CGCAGGAAGCTACACGCCCTTCATGCTGGTTGGGCTCTACCACCTGCCCG TGGCCCGCGTGGTGCTGGTGGCTGAGTGGCTGGCGGCCCTCGGCGGCTGC GTCTTCTCCATGGCCTCCGACCTCTTCCAGGTACGAACGCTGAACCCGGG AAAGACAAGGGAGGGGAAGGGGAGGCGTTTTGCGAGGGGCTAAGAATGGA GAACGGGCGCAAGGCAGGGCGGCGGCGGGCGGGAAGATAGGAGAATTGGG GACGGATATGGAGAAGAAACCCGGATGCAGTTCTCGGGGGCTTTCTCCTT GCGCCGTTTCGCGTAAGTTGGTGTATTGGCACGACATTCCTCTGTTCCAA CGACTTCTGATCGTACGACAGCCCCCGTCTCTGCAGAAATCCACAATGTA CGTGGAGCTTCTCTTCTACCTGGCGATGGGGCTGGCTGTTTTCTGCGTCT GGCCACAGGTACTAAGGGAAGCGGGGAGCACAAATTTCGTCCTCTTTTGA TAGTTTTGCTTGGTTTAAGATCGCTTTGTCTCTTTTGAACCTTTGTACAG TTCACGCGAAGGCCTGCCTTTTAAAACTTCGGGTAAAGCATCCCATCCCT TTCTATCGATAGCTTCTCGTATCGGACAACTTAAGAAACGGGGCTGCTTG TCCTCTCGTTGCCTTGTTTCGCCCAGCCTATGGTTCGCGACCCACGGGTC CAGCACATCCCGCCCGTCTTCCCCCGTCGCTTGCTGGCGGGGTCGCCCTC TCCTTTCCCTCGCCGCCCGTCCTCTTTTTCCTTCTGATTTTGCCTCCTAA AACGGTCTGCGAACATTCGAGATCTGGCCGCAGGTGCGGGACAACCTGCC ATGGGAAGTCATCCTGCTGCTGGTCGGCGGCGGCGCCGCCTACGTCTTTG GCGTCATCTTCTTCGTCGCCGGAAACACAGTCCCCATCTACCACACCGTG TGGCACGTCTTTGTCATGGTGGCGTCGGCGATGCACTGGTTCGCCATATT CTTTTTCGTCGTCCATGCACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14392:164..1235+

>mRNA_P-wetherbeei_contig14392.1.1 ID=mRNA_P-wetherbeei_contig14392.1.1|Name=mRNA_P-wetherbeei_contig14392.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig14392:164..1235+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATTCTTTTATCAGGTGGCGGACCACTGCGCCATCTACTTTCTGAT
CGCAGGAAGCTACACGCCCTTCATGCTGGTTGGGCTCTACCACCTGCCCG
TGGCCCGCGTGGTGCTGGTGGCTGAGTGGCTGGCGGCCCTCGGCGGCTGC
GTCTTCTCCATGGCCTCCGACCTCTTCCAGAAATCCACAATGTACGTGGA
GCTTCTCTTCTACCTGGCGATGGGGCTGGCTGTTTTCTGCGTCTGGCCAC
AGGTGCGGGACAACCTGCCATGGGAAGTCATCCTGCTGCTGGTCGGCGGC
GGCGCCGCCTACGTCTTTGGCGTCATCTTCTTCGTCGCCGGAAACACAGT
CCCCATCTACCACACCGTGTGGCACGTCTTTGTCATGGTGGCGTCGGCGA
TGCACTGGTTCGCCATATTCTTTTTCGTCGTCCATGCACCG
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