mRNA_P-wetherbeei_contig1439.4.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1439.4.2
Unique NamemRNA_P-wetherbeei_contig1439.4.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1439.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1439contigP-wetherbeei_contig1439:3549..6945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2788
Hectar predicted targeting categoryother localisation
Exons4
Cds size2568
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1439.4.2prot_P-wetherbeei_contig1439.4.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1439 3606..6782 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.1972466-UTR-P-wetherbeei_contig1439:3548..36051683186020.1972466-UTR-P-wetherbeei_contig1439:3548..3605Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1439 3549..3605 +
1683186020.234888-UTR-P-wetherbeei_contig1439:6782..69451683186020.234888-UTR-P-wetherbeei_contig1439:6782..6945Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1439 6783..6945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.20487-CDS-P-wetherbeei_contig1439:3605..36241683186020.20487-CDS-P-wetherbeei_contig1439:3605..3624Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1439 3606..3624 +
1683186020.211817-CDS-P-wetherbeei_contig1439:3739..41091683186020.211817-CDS-P-wetherbeei_contig1439:3739..4109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1439 3740..4109 +
1683186020.2188976-CDS-P-wetherbeei_contig1439:4293..51941683186020.2188976-CDS-P-wetherbeei_contig1439:4293..5194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1439 4294..5194 +
1683186020.2259884-CDS-P-wetherbeei_contig1439:5504..67821683186020.2259884-CDS-P-wetherbeei_contig1439:5504..6782Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1439 5505..6782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1439.4.2

>prot_P-wetherbeei_contig1439.4.2 ID=prot_P-wetherbeei_contig1439.4.2|Name=mRNA_P-wetherbeei_contig1439.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=856bp
MRDMTAEAAGDDLWLSARRACDDAGPSKAEDVAAAMAAEMTVAVGREEPS
QILLGAADHVFDGSASAAALLKAFCWNFFPAALSCVGDAEGAAFLRNLSF
RYLRELSAVASAREMNLMALSHLHAYDDPRAFAAIFEVVGLSLVRLPAPK
RRVFLASSLSALWPRLQRFSSVTSDADAGDEECDGASGSDSDAELSPIAT
NAAGKSAAAAAARMPAVAAAAAALARPFLDLPPSSNNAASAAVLQPYVSL
TAGAAATMETAAVTTPEIVAPLSGFLLNVLELVLGASDVDDGSGGGGGAE
PPAKEKGARQQNVIRTAAGAVLDLLFSMPGVDLEFLLEHYSRQRYEQWRR
RRQRLAQGGTPQTGGGDGGSSGDVGNDSDDALESLPAGCLPSTLGALTML
PPASWREEAVAAAAYVAVCDPDASRRWLPKVWSPVRLWDLCWPHAEVLLG
NKTISSASRGIDLLAAAALPLSSSSLACAATAAPAAAAAPAIFPVRTRRT
RQKRKPATAASAVAAAGGKRDGDSAADDDGGSGGNDGDDNDDPFDPRICD
AGRLLRSLIDAVVACPEAALRSHGHAALEAVLAGIEPEMCFVLLESLVTE
CPFPNASGLLLDCFRKHVCAAMAAVCAGGTGIARAAAAMVGPAQQQLPPV
AAPAAAEGNNCCGCGGSGTAAAMAPANPFASPRVAGFVMVQLEAMARCPS
QELLNYMDVHLALIGLHRFCLLVDENSYGSGDSSGGGLLGVHVPEAVMEG
AALLERFAERVRRKLEAYERQSQQLAAAAQAATPAALDAFAIGGNGAADL
EALSAAVAASGGPVPRAAVSMDLTRAAKLRRRVPPDFFRLAMAVEAADAS
LLLMK*
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mRNA from alignment at P-wetherbeei_contig1439:3549..6945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1439.4.2 ID=mRNA_P-wetherbeei_contig1439.4.2|Name=mRNA_P-wetherbeei_contig1439.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3397bp|location=Sequence derived from alignment at P-wetherbeei_contig1439:3549..6945+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACTTGGGCTCGCCGAACAGAGCCTAAACACTCCGCAGGCCGCGGCA
TCCAAATATGCGAGATATGACTGCAGGCAAGCCGTATTGGAAGGGGAGAC
TATCAAATGCAAAGCCCTTTTCCTTTCTCCCTCCCCCCTTTCCTTCTCAT
TTCAATCTCGCGCTCTCTTGCCACCAACACCGCCAATGCAGAGGCTGCGG
GCGATGATCTGTGGCTGTCAGCAAGGCGAGCTTGTGATGATGCAGGGCCT
TCAAAGGCCGAGGACGTGGCTGCCGCGATGGCTGCCGAGATGACTGTGGC
AGTCGGGCGCGAGGAACCGTCCCAAATCCTTCTTGGCGCCGCTGACCATG
TCTTTGACGGCAGCGCCTCGGCTGCTGCCTTGCTGAAGGCGTTTTGCTGG
AACTTCTTCCCCGCGGCCCTGTCATGCGTCGGCGACGCCGAGGGGGCCGC
TTTCTTGCGCAATCTCTCTTTCCGGTATCTTCGAGAGTTGTCTGCGGTGG
CGAGCGCGCGGGAGATGAACCTGATGGCGTTGAGTCACCTCCACGCATAC
GATGATCCCAGGTGCGTTGCAAAAAATAGCGCTTTCTCTTTTCTCTTTCG
GTTTGCACCGAGTCCTTCTGCATTGTCTTAGTGGCTCCAAAGTAGTTGAA
AAAATGAGGTTGCCGTAAGGTATTAAGTAGTGATCAGGCATTGCTCCATC
TAGAGTCAATATAAATCTTCACTATTGCTATTCTTCACTCTGCAGGGCGT
TTGCGGCCATTTTCGAAGTCGTCGGGCTGTCCCTGGTCCGACTTCCCGCC
CCGAAGCGGCGCGTCTTTCTTGCCTCCTCTTTGTCCGCCCTCTGGCCGCG
GCTGCAGCGCTTCAGCAGCGTGACTAGCGATGCTGATGCCGGCGACGAGG
AATGCGATGGCGCCAGCGGCAGCGACAGTGACGCCGAGTTGTCTCCTATA
GCAACAAACGCAGCTGGCAAGTCTGCGGCGGCCGCGGCGGCCAGGATGCC
AGCGGTTGCCGCAGCTGCCGCTGCTCTTGCCCGGCCCTTTTTGGACTTAC
CGCCGTCATCTAATAACGCAGCATCGGCTGCAGTGCTGCAACCGTATGTA
TCGTTAACGGCAGGCGCTGCTGCGACGATGGAAACGGCGGCCGTGACAAC
TCCCGAAATTGTGGCACCGCTGTCGGGTTTCCTCCTCAACGTGCTTGAAC
TTGTTCTCGGCGCATCGGACGTGGACGACGGCAGCGGCGGCGGCGGCGGT
GCGGAACCACCCGCGAAAGAGAAAGGGGCGCGACAGCAGAACGTAATCAG
GACTGCTGCAGGAGCCGTTTTGGACCTGCTGTTCAGCATGCCCGGCGTCG
ACTTGGAGTTCTTGCTGGAGCATTACTCCCGGCAGAGGTACGAGCAATGG
CGGCGGCGGCGGCAACGGCTGGCGCAAGGCGGAACGCCTCAGACTGGCGG
CGGCGACGGCGGCAGCAGCGGTGATGTTGGCAACGACAGTGACGACGCTT
TGGAGAGCCTGCCGGCAGGGTGCCTGCCGTCGACGCTGGGCGCGCTCACG
ATGCTTCCGCCGGCGTCGTGGCGCGAGGAGGCCGTGGCGGCGGCCGCCTA
TGTCGCCGTGTGCGATCCGGACGCCAGCAGGCGGTGGCTGCCCAAGGTCA
GTCATTCTGATGGCATTCCCTTTCCGTGTTTCTGCCTGTCCGTTTCCTCG
TTGCGATAATTAGATTGTTATGGCACCAGGGTTTTGCGTCGGGGTGCGCG
GCTTCCTCAGTTCCAAGTTTCTTCGTAAGGAAAGAGCCCTCTTACTTTCT
ACTGTTGTATACTACGTGGCCGTTGCAGTGGCAGGAAAGAGCACATCTCA
AAGTGGAAGCTGCACCTAAGGGGTAGCGAAGGAATTGAGTCTCATATCTG
ACTCGGTTCCTCCGTTTATCTTTCCGCTTCCCTTACCGCCGCTGAAAACC
CCACAGGTGTGGTCACCGGTCCGCCTTTGGGACTTGTGCTGGCCGCACGC
CGAGGTACTTCTCGGCAACAAAACCATCTCGTCCGCCTCCCGCGGCATTG
ACCTCTTGGCGGCCGCTGCGCTCCCGCTATCTTCCTCGTCACTCGCCTGT
GCAGCCACGGCCGCGCCTGCAGCAGCAGCGGCTCCTGCCATATTCCCTGT
GCGGACGCGGCGAACGCGGCAGAAACGGAAGCCAGCGACCGCTGCCAGCG
CTGTCGCCGCAGCCGGCGGGAAGCGGGATGGAGATTCAGCGGCCGACGAC
GACGGCGGCAGCGGCGGCAACGACGGGGATGACAACGACGATCCATTTGA
CCCACGGATCTGCGACGCCGGCCGGCTACTCCGGTCGCTCATCGACGCCG
TCGTCGCCTGTCCTGAGGCGGCGCTCCGCTCCCACGGCCACGCCGCGCTG
GAAGCGGTCCTGGCCGGTATCGAGCCGGAGATGTGCTTTGTGTTGCTCGA
ATCACTGGTGACCGAATGCCCGTTCCCGAACGCGTCCGGCCTGCTGCTGG
ACTGCTTCCGCAAACATGTGTGCGCTGCCATGGCGGCGGTGTGTGCCGGC
GGCACGGGGATCGCAAGGGCAGCGGCGGCAATGGTAGGACCGGCGCAGCA
GCAGTTGCCGCCTGTAGCAGCGCCGGCTGCTGCCGAGGGCAATAACTGCT
GTGGCTGTGGCGGCAGCGGTACTGCAGCGGCGATGGCGCCGGCAAACCCA
TTTGCATCGCCGCGCGTCGCCGGCTTTGTGATGGTGCAGCTCGAGGCCAT
GGCGCGGTGCCCGTCCCAAGAGCTCTTAAACTATATGGACGTGCACCTCG
CGCTCATCGGCCTCCACCGGTTCTGCCTGCTCGTGGACGAAAATAGCTAC
GGCAGTGGCGATAGTAGCGGCGGCGGGTTGCTGGGCGTGCATGTTCCGGA
GGCGGTGATGGAAGGCGCCGCGTTGCTGGAGCGCTTTGCCGAGCGCGTCC
GCCGCAAGCTTGAGGCGTACGAACGGCAGAGCCAGCAGCTGGCAGCGGCG
GCGCAAGCTGCGACCCCAGCCGCCCTTGACGCCTTCGCCATCGGTGGGAA
CGGAGCGGCGGACCTCGAGGCGCTTTCTGCCGCCGTTGCGGCTTCCGGGG
GTCCGGTACCTCGCGCCGCAGTGAGCATGGACCTCACCAGAGCCGCCAAA
TTGCGGCGGCGGGTGCCGCCTGACTTTTTCCGGCTGGCCATGGCGGTGGA
GGCGGCGGATGCATCACTGCTACTCATGAAATGACATTTGGGAAAGGCTT
GGGAGAAAGACTGTGTTGTCCTCTAGCCCGCCGTTCGCTCGTGGGAATAC
TTGGACACTTCCATAAAACAAATGCAAGCAGCAATAAGAATTAAATCGGA
GAGGGACACACACACAACTAAAGCAAGACGAACAAAATAGATTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1439:3549..6945+

>mRNA_P-wetherbeei_contig1439.4.2 ID=mRNA_P-wetherbeei_contig1439.4.2|Name=mRNA_P-wetherbeei_contig1439.4.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2568bp|location=Sequence derived from alignment at P-wetherbeei_contig1439:3549..6945+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGATATGACTGCAGAGGCTGCGGGCGATGATCTGTGGCTGTCAGC
AAGGCGAGCTTGTGATGATGCAGGGCCTTCAAAGGCCGAGGACGTGGCTG
CCGCGATGGCTGCCGAGATGACTGTGGCAGTCGGGCGCGAGGAACCGTCC
CAAATCCTTCTTGGCGCCGCTGACCATGTCTTTGACGGCAGCGCCTCGGC
TGCTGCCTTGCTGAAGGCGTTTTGCTGGAACTTCTTCCCCGCGGCCCTGT
CATGCGTCGGCGACGCCGAGGGGGCCGCTTTCTTGCGCAATCTCTCTTTC
CGGTATCTTCGAGAGTTGTCTGCGGTGGCGAGCGCGCGGGAGATGAACCT
GATGGCGTTGAGTCACCTCCACGCATACGATGATCCCAGGGCGTTTGCGG
CCATTTTCGAAGTCGTCGGGCTGTCCCTGGTCCGACTTCCCGCCCCGAAG
CGGCGCGTCTTTCTTGCCTCCTCTTTGTCCGCCCTCTGGCCGCGGCTGCA
GCGCTTCAGCAGCGTGACTAGCGATGCTGATGCCGGCGACGAGGAATGCG
ATGGCGCCAGCGGCAGCGACAGTGACGCCGAGTTGTCTCCTATAGCAACA
AACGCAGCTGGCAAGTCTGCGGCGGCCGCGGCGGCCAGGATGCCAGCGGT
TGCCGCAGCTGCCGCTGCTCTTGCCCGGCCCTTTTTGGACTTACCGCCGT
CATCTAATAACGCAGCATCGGCTGCAGTGCTGCAACCGTATGTATCGTTA
ACGGCAGGCGCTGCTGCGACGATGGAAACGGCGGCCGTGACAACTCCCGA
AATTGTGGCACCGCTGTCGGGTTTCCTCCTCAACGTGCTTGAACTTGTTC
TCGGCGCATCGGACGTGGACGACGGCAGCGGCGGCGGCGGCGGTGCGGAA
CCACCCGCGAAAGAGAAAGGGGCGCGACAGCAGAACGTAATCAGGACTGC
TGCAGGAGCCGTTTTGGACCTGCTGTTCAGCATGCCCGGCGTCGACTTGG
AGTTCTTGCTGGAGCATTACTCCCGGCAGAGGTACGAGCAATGGCGGCGG
CGGCGGCAACGGCTGGCGCAAGGCGGAACGCCTCAGACTGGCGGCGGCGA
CGGCGGCAGCAGCGGTGATGTTGGCAACGACAGTGACGACGCTTTGGAGA
GCCTGCCGGCAGGGTGCCTGCCGTCGACGCTGGGCGCGCTCACGATGCTT
CCGCCGGCGTCGTGGCGCGAGGAGGCCGTGGCGGCGGCCGCCTATGTCGC
CGTGTGCGATCCGGACGCCAGCAGGCGGTGGCTGCCCAAGGTGTGGTCAC
CGGTCCGCCTTTGGGACTTGTGCTGGCCGCACGCCGAGGTACTTCTCGGC
AACAAAACCATCTCGTCCGCCTCCCGCGGCATTGACCTCTTGGCGGCCGC
TGCGCTCCCGCTATCTTCCTCGTCACTCGCCTGTGCAGCCACGGCCGCGC
CTGCAGCAGCAGCGGCTCCTGCCATATTCCCTGTGCGGACGCGGCGAACG
CGGCAGAAACGGAAGCCAGCGACCGCTGCCAGCGCTGTCGCCGCAGCCGG
CGGGAAGCGGGATGGAGATTCAGCGGCCGACGACGACGGCGGCAGCGGCG
GCAACGACGGGGATGACAACGACGATCCATTTGACCCACGGATCTGCGAC
GCCGGCCGGCTACTCCGGTCGCTCATCGACGCCGTCGTCGCCTGTCCTGA
GGCGGCGCTCCGCTCCCACGGCCACGCCGCGCTGGAAGCGGTCCTGGCCG
GTATCGAGCCGGAGATGTGCTTTGTGTTGCTCGAATCACTGGTGACCGAA
TGCCCGTTCCCGAACGCGTCCGGCCTGCTGCTGGACTGCTTCCGCAAACA
TGTGTGCGCTGCCATGGCGGCGGTGTGTGCCGGCGGCACGGGGATCGCAA
GGGCAGCGGCGGCAATGGTAGGACCGGCGCAGCAGCAGTTGCCGCCTGTA
GCAGCGCCGGCTGCTGCCGAGGGCAATAACTGCTGTGGCTGTGGCGGCAG
CGGTACTGCAGCGGCGATGGCGCCGGCAAACCCATTTGCATCGCCGCGCG
TCGCCGGCTTTGTGATGGTGCAGCTCGAGGCCATGGCGCGGTGCCCGTCC
CAAGAGCTCTTAAACTATATGGACGTGCACCTCGCGCTCATCGGCCTCCA
CCGGTTCTGCCTGCTCGTGGACGAAAATAGCTACGGCAGTGGCGATAGTA
GCGGCGGCGGGTTGCTGGGCGTGCATGTTCCGGAGGCGGTGATGGAAGGC
GCCGCGTTGCTGGAGCGCTTTGCCGAGCGCGTCCGCCGCAAGCTTGAGGC
GTACGAACGGCAGAGCCAGCAGCTGGCAGCGGCGGCGCAAGCTGCGACCC
CAGCCGCCCTTGACGCCTTCGCCATCGGTGGGAACGGAGCGGCGGACCTC
GAGGCGCTTTCTGCCGCCGTTGCGGCTTCCGGGGGTCCGGTACCTCGCGC
CGCAGTGAGCATGGACCTCACCAGAGCCGCCAAATTGCGGCGGCGGGTGC
CGCCTGACTTTTTCCGGCTGGCCATGGCGGTGGAGGCGGCGGATGCATCA
CTGCTACTCATGAAATGA
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