mRNA_P-wetherbeei_contig14367.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14367.2.1
Unique NamemRNA_P-wetherbeei_contig14367.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.080e-16
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   46 ISDEEYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGV 315
            +S+  + VV++D+ETTGL  K   V+Q+AAKVLGS++   +FA FV P +  VP  + ++TGI   +LAA GA+PF + +P F +WL GV
Sbjct:  739 LSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGV 828
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.370e-15
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   13 SPAGRRRRVPR---ISDEEYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGV 315
            +P+G    + R   +S+  + VV++D+ETTGL  K   V+Q+AAKVLGS++   +FA ++ P    VP  + ++TGI   +LAA GA+PF + +P F +WL GV
Sbjct: 1124 APSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGV 1227
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 6.700e-8
Identity = 38/92 (41.30%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:   55 EEYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFV-----APWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGV 315
            E  V+VLLD+ETTGL      VLQ+AAKVLGS     AFA ++      PW+        ++TGI   +L   GA PF + +  F  WL  V
Sbjct:   38 ENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPENTPWA----EGAREVTGITWEVLEKEGALPFSEAWALFRRWLAEV 125
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: UPI001CE2B531 (DUF294 nucleotidyltransferase-like domain-containing protein n=1 Tax=Bradyrhizobium sp. WSM 1738 TaxID=2821405 RepID=UPI001CE2B531)

HSP 1 Score: 56.6 bits (135), Expect = 1.680e-6
Identity = 31/81 (38.27%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   70 VLLDLETTGLTPKLAGVLQIAAKVLGSDH--EDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWL 306
            V++D ETTGL P+ A ++++AA  L +    + D+F   + P +  +P  I+++ GIDDA +AAA   PF   +PRF  +L
Sbjct:   16 VVVDTETTGLDPRKARIIELAAVRLSAGKLVDGDSFRQLIRPGAESIPAGITEVHGIDDAAVAAA--PPFADVWPRFREYL 94
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A432RAQ9_9AQUI (3'-5' exonuclease n=1 Tax=Hydrogenothermus sp. TaxID=2231113 RepID=A0A432RAQ9_9AQUI)

HSP 1 Score: 54.7 bits (130), Expect = 3.330e-6
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   58 EYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKT-FPRFLSWLDGV 315
            E   V+LDLETTG  P+ + +++IA          D F + V P  G +P++ISKLTGI +A++     QP   T FP F  +++G 
Sbjct:    9 EATFVILDLETTGFNPENSSIIEIAGIKYQGGMVVDKFHSLVKPDEGFIPDNISKLTGITNALVID---QPRIDTVFPLFKKFIEGT 92
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A2N3GAS5_9ACTN (DNA polymerase III subunit epsilon n=1 Tax=Actinobacteria bacterium HGW-Actinobacteria-10 TaxID=2013645 RepID=A0A2N3GAS5_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 4.390e-6
Identity = 39/89 (43.82%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:   58 EYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGR-VPNDISKLTGIDDAMLAAA-GAQPFHKTFPRFLSWLDGVA 318
            E  VV +D+ETTG  P    +++IAA         D F   V P  GR VP +I+KLTGIDDAMLA A G +     F RF    D +A
Sbjct:   39 EDEVVFVDIETTGFDPDRDAIIEIAALRAKGPEMLDRFHTMVDP--GRPVPLEITKLTGIDDAMLAGAPGPEAAATDFARFAGGADIIA 125
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A831YDC5_9AQUI (3'-5' exonuclease n=2 Tax=Sulfurihydrogenibium TaxID=212790 RepID=A0A831YDC5_9AQUI)

HSP 1 Score: 54.3 bits (129), Expect = 4.560e-6
Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   55 EEYVVVLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFL 297
            EE   ++LDLETTGL P  + +++IAA  +      D F   V P  G +P +I+KLTGI +A++         + FP+FL
Sbjct:    7 EEATFLILDLETTGLNPVNSEIIEIAALKVEGGVVVDKFHTLVKPSIGFIPPNITKLTGITNALVV--DKPTIKEVFPQFL 85
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A7X7ZVA2_9CLOT (PHP domain-containing protein (Fragment) n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X7ZVA2_9CLOT)

HSP 1 Score: 55.1 bits (131), Expect = 5.620e-6
Identity = 37/93 (39.78%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   70 VLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGVASRPASAHAAS 348
            V+ D+ETTGL P   G+ +I A  + +    D F+ FV P    +P  I+KLTGI DAM+A  GA    +    FL +  G+   P  AH AS
Sbjct:  422 VVFDIETTGLNPSRDGITEIGAVKVENGKIADRFSTFVDPGM-PIPEHITKLTGITDAMVA--GAPGISRAVGDFLDFAAGL---PLVAHNAS 508
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A7X9AI67_9CLOT (DNA polymerase III PolC-type n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X9AI67_9CLOT)

HSP 1 Score: 55.1 bits (131), Expect = 6.150e-6
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   70 VLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGVASRPASAHAAS 348
            V+ D+ETTGL P   G+ +I A  +      D F+ FV P    +P  I+KLTGI DAM+A  GA    +    FL +  G+   P  AH AS
Sbjct:  376 VVFDIETTGLNPTKDGITEIGAVKIEDGKIVDTFSTFVDPGM-PIPEHITKLTGITDAMVA--GAPGISQAVGDFLDFAGGL---PVVAHNAS 462
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BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Match: A0A7X8M5V4_9CLOT (DNA polymerase III PolC-type n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8M5V4_9CLOT)

HSP 1 Score: 54.3 bits (129), Expect = 1.140e-5
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   70 VLLDLETTGLTPKLAGVLQIAAKVLGSDHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLSWLDGVASRPASAHAAS 348
            V+ D+ETTGL     G+ +I A  + +    D F+ FV P    +P  I+KLTGI DAM+A  GA    +    FL ++ G+   P  AH AS
Sbjct:  423 VVFDIETTGLNASRDGITEIGAVKVENGKVIDNFSTFVNPGM-PIPESITKLTGITDAMVA--GAPGIDQAIGEFLDFVGGL---PVVAHNAS 509
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14367.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FPN7_ECTSI2.080e-1646.67ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A6H5JXY9_9PHAE1.370e-1541.35ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
A0A7S3UQS9_HETAK6.700e-841.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001CE2B5311.680e-638.27DUF294 nucleotidyltransferase-like domain-containi... [more]
A0A432RAQ9_9AQUI3.330e-637.933'-5' exonuclease n=1 Tax=Hydrogenothermus sp. Tax... [more]
A0A2N3GAS5_9ACTN4.390e-643.82DNA polymerase III subunit epsilon n=1 Tax=Actinob... [more]
A0A831YDC5_9AQUI4.560e-638.273'-5' exonuclease n=2 Tax=Sulfurihydrogenibium Tax... [more]
A0A7X7ZVA2_9CLOT5.620e-639.78PHP domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7X9AI67_9CLOT6.150e-639.78DNA polymerase III PolC-type n=1 Tax=Clostridiacea... [more]
A0A7X8M5V4_9CLOT1.140e-538.71DNA polymerase III PolC-type n=1 Tax=Clostridiacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14367contigP-wetherbeei_contig14367:1279..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPN7
Preferred nameTREX2
PFAMsDEAD,Helicase_C,RNase_T
Model size446
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
Exons1
Evalue3.41e-17
EggNOG OGsCOG0847@1|root,KOG0344@1|root,KOG0344@2759|Eukaryota,KOG4793@2759|Eukaryota
EC2.7.7.7,3.1.11.2,3.6.4.12
Descriptionexodeoxyribonuclease III activity
Cds size444
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.5923996-CDS-P-wetherbeei_contig14367:1280..17241683186019.5923996-CDS-P-wetherbeei_contig14367:1280..1724Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14367 1281..1724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14367.2.1prot_P-wetherbeei_contig14367.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14367 1281..1724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14367.2.1

>prot_P-wetherbeei_contig14367.2.1 ID=prot_P-wetherbeei_contig14367.2.1|Name=mRNA_P-wetherbeei_contig14367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
VPASSPAGRRRRVPRISDEEYVVVLLDLETTGLTPKLAGVLQIAAKVLGS
DHEDDAFAAFVAPWSGRVPNDISKLTGIDDAMLAAAGAQPFHKTFPRFLS
WLDGVASRPASAHAASSSSEQRDMQQEEHLLADAISPMPRLRQPLMPL
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mRNA from alignment at P-wetherbeei_contig14367:1279..1724-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14367.2.1 ID=mRNA_P-wetherbeei_contig14367.2.1|Name=mRNA_P-wetherbeei_contig14367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=446bp|location=Sequence derived from alignment at P-wetherbeei_contig14367:1279..1724- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGGCCTCCTCGCCCGCGGGGCGGCGGCGGCGCGTGCCGCGGATCAG
CGACGAGGAGTACGTCGTCGTGCTGCTGGACCTGGAGACGACGGGCCTGA
CGCCGAAGCTCGCAGGCGTCCTGCAGATCGCCGCCAAAGTGCTGGGGTCG
GACCACGAAGACGACGCGTTCGCGGCGTTCGTGGCGCCGTGGTCCGGCCG
CGTGCCGAACGACATCTCCAAGCTAACCGGCATCGACGATGCCATGCTAG
CGGCGGCCGGCGCACAGCCGTTCCACAAGACCTTTCCGCGCTTTTTAAGT
TGGCTGGACGGCGTCGCCAGCCGCCCGGCGTCGGCGCACGCCGCTTCGTC
ATCGTCCGAGCAGCGTGACATGCAGCAGGAGGAGCACCTGCTGGCCGATG
CAATATCGCCTATGCCGCGGCTGCGGCAGCCGCTGATGCCGCTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14367:1279..1724-

>mRNA_P-wetherbeei_contig14367.2.1 ID=mRNA_P-wetherbeei_contig14367.2.1|Name=mRNA_P-wetherbeei_contig14367.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig14367:1279..1724- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGGCCTCCTCGCCCGCGGGGCGGCGGCGGCGCGTGCCGCGGATCAG
CGACGAGGAGTACGTCGTCGTGCTGCTGGACCTGGAGACGACGGGCCTGA
CGCCGAAGCTCGCAGGCGTCCTGCAGATCGCCGCCAAAGTGCTGGGGTCG
GACCACGAAGACGACGCGTTCGCGGCGTTCGTGGCGCCGTGGTCCGGCCG
CGTGCCGAACGACATCTCCAAGCTAACCGGCATCGACGATGCCATGCTAG
CGGCGGCCGGCGCACAGCCGTTCCACAAGACCTTTCCGCGCTTTTTAAGT
TGGCTGGACGGCGTCGCCAGCCGCCCGGCGTCGGCGCACGCCGCTTCGTC
ATCGTCCGAGCAGCGTGACATGCAGCAGGAGGAGCACCTGCTGGCCGATG
CAATATCGCCTATGCCGCGGCTGCGGCAGCCGCTGATGCCGCTG
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