mRNA_P-wetherbeei_contig14367.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14367.1.1
Unique NamemRNA_P-wetherbeei_contig14367.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.630e-15
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  228 VALVAHNAAFDMRFLAEEQRRAGCAEGLL-RDAGVTAVVDTLGIFRDTRREFWSQRPGDGR-PTAPPRLRLETIHRHLTGRDLLRAHNAVYDVLGLDTILRAPGL-EHWRAVALRH---QIDIP 581
            V  VAHNA FD +FL EE  R G +  ++ +D GV  +VD+L   ++     W Q+  D   PT P   +L  +  HL G ++  AHNA+ DV+GL+ IL APG+ E WR VA  H   QI +P
Sbjct: 1241 VVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKEN--SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVP 1362
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BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.420e-15
Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 3 
Query:  228 VALVAHNAAFDMRFLAEEQRRAGCAEGLL-RDAGVTAVVDTLGIFRDTRREFWSQRPGDGR-PTAPPRLRLETIHRHLTGRDLLRAHNAVYDVLGLDTILRAPGL-EHWRAVALRH---QIDIP 581
            V  VAHNA FD +FL EE  R G +  ++ +D GV  +VD+L   +++    W Q+  D   PT P   +L  +  HL G ++  AHNA+ DV+GL+ IL APG+ E WR VA  H   QI +P
Sbjct:  842 VVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKES--SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVP 963
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14367.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXY9_9PHAE3.630e-1541.94ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
D7FPN7_ECTSI4.420e-1541.94ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14367contigP-wetherbeei_contig14367:118..1243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPN7
Preferred nameTREX2
PFAMsDEAD,Helicase_C,RNase_T
Model size1126
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335,ko:K03655,ko:K10790,ko:K10791,ko:K10900,ko:K10905
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,ko03460,ko04623,map00230,map00240,map01100,map03030,map03410,map03420,map03440,map03460,map04623
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000166,GO:0000266,GO:0000287,GO:0000738,GO:0001817,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006298,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008296,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010033,GO:0010501,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017076,GO:0017111,GO:0019439,GO:0030554,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032404,GO:0032405,GO:0032407,GO:0032479,GO:0032552,GO:0032554,GO:0032558,GO:0033554,GO:0033955,GO:0034097,GO:0034641,GO:0034645,GO:0034655,GO:0035456,GO:0035458,GO:0036094,GO:0042175,GO:0042221,GO:0042623,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0046700,GO:0046872,GO:0046983,GO:0048285,GO:0050789,GO:0050896,GO:0051239,GO:0051716,GO:0065007,GO:0070013,GO:0070035,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098827,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576
Exons1
Evalue1.74e-17
EggNOG OGsCOG0847@1|root,KOG0344@1|root,KOG0344@2759|Eukaryota,KOG4793@2759|Eukaryota
EC2.7.7.7,3.1.11.2,3.6.4.12
Descriptionexodeoxyribonuclease III activity
Cds size555
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.5282936-UTR-P-wetherbeei_contig14367:117..6591683186019.5282936-UTR-P-wetherbeei_contig14367:117..659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14367 118..659 -
1683186019.5491-UTR-P-wetherbeei_contig14367:1214..12431683186019.5491-UTR-P-wetherbeei_contig14367:1214..1243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14367 1215..1243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.5399222-CDS-P-wetherbeei_contig14367:659..12141683186019.5399222-CDS-P-wetherbeei_contig14367:659..1214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14367 660..1214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14367.1.1prot_P-wetherbeei_contig14367.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14367 660..1214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14367.1.1

>prot_P-wetherbeei_contig14367.1.1 ID=prot_P-wetherbeei_contig14367.1.1|Name=mRNA_P-wetherbeei_contig14367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MSMDVQAAMEVENIGFEGALHTQTTFMSQQRVYAPAAPEDFALAAAADPT
AELSPPLGRPLQQRRKVALVAHNAAFDMRFLAEEQRRAGCAEGLLRDAGV
TAVVDTLGIFRDTRREFWSQRPGDGRPTAPPRLRLETIHRHLTGRDLLRA
HNAVYDVLGLDTILRAPGLEHWRAVALRHQIDIP*
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mRNA from alignment at P-wetherbeei_contig14367:118..1243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14367.1.1 ID=mRNA_P-wetherbeei_contig14367.1.1|Name=mRNA_P-wetherbeei_contig14367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1126bp|location=Sequence derived from alignment at P-wetherbeei_contig14367:118..1243- (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCGGCACGGCGGTGCACGGTTCGATGTCGATGGACGTCCAGGCG
GCAATGGAGGTCGAAAACATTGGCTTCGAGGGGGCCCTTCACACACAAAC
CACTTTTATGTCGCAGCAGCGGGTGTACGCGCCGGCGGCGCCGGAGGATT
TCGCACTGGCAGCAGCGGCTGACCCGACGGCGGAACTCTCTCCTCCATTG
GGGCGGCCGTTGCAGCAGCGCCGAAAGGTGGCGCTGGTGGCGCACAATGC
CGCCTTCGACATGCGGTTCCTGGCGGAGGAGCAGCGGCGGGCGGGCTGCG
CCGAGGGGCTGCTGCGCGACGCCGGCGTGACGGCGGTTGTCGACACGCTC
GGAATCTTCCGCGACACGCGCCGGGAGTTCTGGAGCCAGCGGCCAGGTGA
CGGGCGCCCGACAGCACCGCCGCGGCTCCGGTTGGAGACCATCCACCGGC
ACCTGACCGGACGGGACCTGCTGCGGGCGCACAATGCTGTGTACGACGTT
TTGGGCCTCGACACCATCCTGCGAGCGCCAGGACTCGAGCACTGGCGGGC
CGTGGCCCTGCGGCACCAGATCGACATCCCATGAGGGAAGCAAAACGCCG
TAGGCGGCGGTTGGTCGCGACGGTCTTCCCTGCTGCTGCTTCGACGCGGA
CCGCATGGACGGTGTCGCGCGGCGGTTGCTGCTCTCCGGCTTGGCCACTC
CCATTGGCCGGGGCGATGCGGCTTGCGGTGGTGGCAGGGGCCGCGGCAAC
AGGAAGAAGGCGGCGGCGGCAGCAGTGGGAATGCGACGGCGGCACCAGTG
GGAATGCAATGGCGGCAGCAGCGGCTGCTGCGGCAGCGGGCGACGTCGGG
GCCACCGGCGAACGCTGCTTCTCTTGGCAAGCGTTGGCCAGAAAATGGAC
GGTAATCACATGCGGCGCTCGTCCCGCTCGAAGGGAATCGGAGGAACCTG
TGCATAGGTACTGTTCAGAGGATGGCCTTAGCACACGCGATGGATTTTGA
GAGGTATTTGGAATAGAGAAGTGAGGAAGGATTGTCGGGTGATGCAACCC
GAAAGCGCATCGGAAAAGCGCCGACACCGGCAGCAACAAGGGCTCGCGAG
AAGGCGATAAAACAACTTTTACAAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14367:118..1243-

>mRNA_P-wetherbeei_contig14367.1.1 ID=mRNA_P-wetherbeei_contig14367.1.1|Name=mRNA_P-wetherbeei_contig14367.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig14367:118..1243- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGATGGACGTCCAGGCGGCAATGGAGGTCGAAAACATTGGCTTCGA
GGGGGCCCTTCACACACAAACCACTTTTATGTCGCAGCAGCGGGTGTACG
CGCCGGCGGCGCCGGAGGATTTCGCACTGGCAGCAGCGGCTGACCCGACG
GCGGAACTCTCTCCTCCATTGGGGCGGCCGTTGCAGCAGCGCCGAAAGGT
GGCGCTGGTGGCGCACAATGCCGCCTTCGACATGCGGTTCCTGGCGGAGG
AGCAGCGGCGGGCGGGCTGCGCCGAGGGGCTGCTGCGCGACGCCGGCGTG
ACGGCGGTTGTCGACACGCTCGGAATCTTCCGCGACACGCGCCGGGAGTT
CTGGAGCCAGCGGCCAGGTGACGGGCGCCCGACAGCACCGCCGCGGCTCC
GGTTGGAGACCATCCACCGGCACCTGACCGGACGGGACCTGCTGCGGGCG
CACAATGCTGTGTACGACGTTTTGGGCCTCGACACCATCCTGCGAGCGCC
AGGACTCGAGCACTGGCGGGCCGTGGCCCTGCGGCACCAGATCGACATCC
CATGA
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