mRNA_P-wetherbeei_contig14361.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14361.1.2
Unique NamemRNA_P-wetherbeei_contig14361.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14361.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14361contigP-wetherbeei_contig14361:290..1725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1319
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionTAFII28-like protein
Ec32 orthologEc-19_003200.1
Cds size699
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.3413448-UTR-P-wetherbeei_contig14361:289..8691683186019.3413448-UTR-P-wetherbeei_contig14361:289..869Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14361 290..869 -
1683186019.3714502-UTR-P-wetherbeei_contig14361:1685..17251683186019.3714502-UTR-P-wetherbeei_contig14361:1685..1725Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14361 1686..1725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.35161-CDS-P-wetherbeei_contig14361:869..12651683186019.35161-CDS-P-wetherbeei_contig14361:869..1265Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14361 870..1265 -
1683186019.3616998-CDS-P-wetherbeei_contig14361:1382..16851683186019.3616998-CDS-P-wetherbeei_contig14361:1382..1685Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14361 1383..1685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14361.1.2prot_P-wetherbeei_contig14361.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14361 870..1685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14361.1.2

>prot_P-wetherbeei_contig14361.1.2 ID=prot_P-wetherbeei_contig14361.1.2|Name=mRNA_P-wetherbeei_contig14361.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=233bp
MSGNILNRSRSPPPPPQGSVPALGNILQRRREVERVEESDSAATAPPAPQ
SEPAPSPSLEEDVKKRYADRMLAVYENGTEEQRKRLQAWRRSQFDRNAIR
GLIDNAVARSLPRDRQPPIGGRKESSLAVMAELAKMFVGEIVEGGESSKS
PPLSLLLVLPLSFRAFSMQIWCYIWEVFRMLSKIELSLSLMLKYARGADH
GVFRQCQRLLHQRSHHRGYSRYCQLAPAAATS*
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mRNA from alignment at P-wetherbeei_contig14361:290..1725-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14361.1.2 ID=mRNA_P-wetherbeei_contig14361.1.2|Name=mRNA_P-wetherbeei_contig14361.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1436bp|location=Sequence derived from alignment at P-wetherbeei_contig14361:290..1725- (Phaeothamnion wetherbeei SAG_119_79)
TGGGTGCACAACAGAGGGGAGGTCGAAGCATTCTGCGTCCATGAGCGGCA
ACATCTTGAACCGCTCGCGCTCACCGCCGCCGCCGCCGCAGGGCAGCGTG
CCTGCGTTAGGGAACATCCTGCAGCGACGAAGGGAAGTGGAACGAGTAGA
GGAGAGCGATAGCGCTGCGACCGCTCCGCCTGCTCCGCAGTCCGAGCCTG
CCCCTTCCCCATCGCTTGAAGAGGACGTGAAGAAGCGCTATGCCGACCGT
ATGCTGGCAGTATACGAGAATGGGACGGAGGAGCAACGCAAGCGGCTCCA
AGCCTGGAGGCGAAGCCAGTTCGACCGCAACGCAATTAGAGGGGTGAGTG
GGACACGTCGTTCGATTGGCTTTTCCGCTGTTTTCCTGTCTATCGCGTTC
CAAGCGTATCTGAACCCTGCCTTGCAATCCGGCTACGCATTTCACATTTG
CCGCGCGCAGCTGATCGACAACGCGGTCGCTCGCAGCTTGCCGCGGGATA
GGCAGCCTCCGATAGGCGGTAGAAAGGAGAGCTCTCTCGCTGTCATGGCC
GAGCTCGCCAAAATGTTTGTGGGAGAGATCGTCGAGGGCGGTGAGTCTTC
TAAATCTCCTCCGCTGTCTCTACTGCTTGTACTCCCGTTAAGCTTCCGGG
CGTTTTCCATGCAAATTTGGTGTTATATTTGGGAGGTATTTCGGATGCTA
TCAAAGATCGAGTTAAGTCTGAGTCTCATGCTGAAATATGCTCGCGGGGC
CGACCACGGAGTTTTTCGCCAATGCCAGCGCCTCCTGCACCAGCGCTCAC
ATCACCGCGGTTACTCTCGTTACTGCCAACTGGCGCCGGCTGCCGCAACG
TCATGAACGCCGGCCAGCCCGGGAAGTGATGAACGAGCGCGGCGAGGAAG
GGCCCATCCACCCGCGGCACATCCTGGAAGCGCATCGGCGTGTGCGGAGA
GACGATGTCGCGCCGCCGCCGCGGCCGGGCTGCAACCGGATGCCTCGCGT
GCTAAATGAAGACCTCATCGGGTGACAGGCGGACGTAGGTACGGATGGAT
GGGAGGAATGGACGGGCGGGGGGGACTGAAAGATAAAAAACCATGCACAT
TGGCCGGGCCGGTCTTGGCGATCATATTGGTCATTCGGAGCAGTTAGGCG
ATTGCAGTTGGCAGCGCCAGTGAATGGCGGTCGTATCGACCGCCCCTTCC
TGCCGTGGTAACCGGGTACAGTCACAACTTGTGGAGATTGCGTGGACGCC
TCGAATGAAAATAGAGATACAAAGTTCAGCCTTAACAGTGCGGCTTAGGT
GTTTGCACGTGTGGTCCTTCAGAGCCGATACTCTGATTCGGGGGAAATGT
TGAGAAAAACCTTTTCCAGCTTCATCGGCGTTCAAACTGGCAAGCTATCA
GAACTTCCTTGTAAATGCTACCGACGCCATTGCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14361:290..1725-

>mRNA_P-wetherbeei_contig14361.1.2 ID=mRNA_P-wetherbeei_contig14361.1.2|Name=mRNA_P-wetherbeei_contig14361.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig14361:290..1725- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGCAACATCTTGAACCGCTCGCGCTCACCGCCGCCGCCGCCGCA
GGGCAGCGTGCCTGCGTTAGGGAACATCCTGCAGCGACGAAGGGAAGTGG
AACGAGTAGAGGAGAGCGATAGCGCTGCGACCGCTCCGCCTGCTCCGCAG
TCCGAGCCTGCCCCTTCCCCATCGCTTGAAGAGGACGTGAAGAAGCGCTA
TGCCGACCGTATGCTGGCAGTATACGAGAATGGGACGGAGGAGCAACGCA
AGCGGCTCCAAGCCTGGAGGCGAAGCCAGTTCGACCGCAACGCAATTAGA
GGGCTGATCGACAACGCGGTCGCTCGCAGCTTGCCGCGGGATAGGCAGCC
TCCGATAGGCGGTAGAAAGGAGAGCTCTCTCGCTGTCATGGCCGAGCTCG
CCAAAATGTTTGTGGGAGAGATCGTCGAGGGCGGTGAGTCTTCTAAATCT
CCTCCGCTGTCTCTACTGCTTGTACTCCCGTTAAGCTTCCGGGCGTTTTC
CATGCAAATTTGGTGTTATATTTGGGAGGTATTTCGGATGCTATCAAAGA
TCGAGTTAAGTCTGAGTCTCATGCTGAAATATGCTCGCGGGGCCGACCAC
GGAGTTTTTCGCCAATGCCAGCGCCTCCTGCACCAGCGCTCACATCACCG
CGGTTACTCTCGTTACTGCCAACTGGCGCCGGCTGCCGCAACGTCATGA
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