mRNA_P-wetherbeei_contig14360.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14360.2.1
Unique NamemRNA_P-wetherbeei_contig14360.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14360.2.1 vs. uniprot
Match: A0A849TIP2_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A849TIP2_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 1.800e-13
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 MSERKITVKQN--PASPMPVEVLADSIKAISEGVRKLRAGRLNERALVLLIQHAAPSPTGSPLSQRAVKDVLAGIDALEREYLKPVK 255
            M+ + I VKQ   P+  +P+EVLA +I +I+EGV+  R G L ++A++LLIQ+AAP+  G P+  + +  VL G ++L + YLK  +
Sbjct:    1 MATKPIKVKQPDLPSDEVPLEVLATAIVSIAEGVKAFRKGPLTDKAILLLIQNAAPNLDGRPIPIKVISAVLEGAESLAKVYLKSTR 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14360.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A849TIP2_9HYPH1.800e-1341.38Uncharacterized protein n=1 Tax=Hyphomicrobiaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14360contigP-wetherbeei_contig14360:275..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size264
Hectar predicted targeting categoryother localisation
Exons1
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186019.3084774-CDS-P-wetherbeei_contig14360:274..5381683186019.3084774-CDS-P-wetherbeei_contig14360:274..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14360 275..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14360.2.1prot_P-wetherbeei_contig14360.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14360 275..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14360.2.1

>prot_P-wetherbeei_contig14360.2.1 ID=prot_P-wetherbeei_contig14360.2.1|Name=mRNA_P-wetherbeei_contig14360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MSERKITVKQNPASPMPVEVLADSIKAISEGVRKLRAGRLNERALVLLIQ
HAAPSPTGSPLSQRAVKDVLAGIDALEREYLKPVKAQ*
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mRNA from alignment at P-wetherbeei_contig14360:275..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14360.2.1 ID=mRNA_P-wetherbeei_contig14360.2.1|Name=mRNA_P-wetherbeei_contig14360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig14360:275..538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGAAAGGAAAATCACCGTGAAACAGAACCCCGCGTCGCCGATGCC
CGTTGAGGTTCTGGCGGACAGCATCAAAGCAATTTCCGAAGGTGTGCGGA
AACTTCGCGCCGGGCGGCTCAATGAGCGGGCACTTGTCCTGCTGATCCAG
CACGCGGCCCCGTCACCGACCGGAAGTCCACTCAGCCAGCGCGCCGTCAA
GGACGTGCTCGCCGGCATCGACGCGCTGGAGCGCGAATACCTCAAGCCGG
TGAAAGCCCAATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14360:275..538+

>mRNA_P-wetherbeei_contig14360.2.1 ID=mRNA_P-wetherbeei_contig14360.2.1|Name=mRNA_P-wetherbeei_contig14360.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig14360:275..538+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGAAAGGAAAATCACCGTGAAACAGAACCCCGCGTCGCCGATGCC
CGTTGAGGTTCTGGCGGACAGCATCAAAGCAATTTCCGAAGGTGTGCGGA
AACTTCGCGCCGGGCGGCTCAATGAGCGGGCACTTGTCCTGCTGATCCAG
CACGCGGCCCCGTCACCGACCGGAAGTCCACTCAGCCAGCGCGCCGTCAA
GGACGTGCTCGCCGGCATCGACGCGCTGGAGCGCGAATACCTCAAGCCGG
TGAAAGCCCAATGA
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