mRNA_P-wetherbeei_contig1435.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1435.1.1
Unique NamemRNA_P-wetherbeei_contig1435.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1435.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1435contigP-wetherbeei_contig1435:417..1294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size878
Hectar predicted targeting categoryother localisation
Exons1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.6746953-UTR-P-wetherbeei_contig1435:416..6551683186018.6746953-UTR-P-wetherbeei_contig1435:416..655Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1435 417..655 +
1683186018.6898854-UTR-P-wetherbeei_contig1435:1198..12941683186018.6898854-UTR-P-wetherbeei_contig1435:1198..1294Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1435 1199..1294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.6827536-CDS-P-wetherbeei_contig1435:655..11981683186018.6827536-CDS-P-wetherbeei_contig1435:655..1198Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1435 656..1198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1435.1.1prot_P-wetherbeei_contig1435.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1435 656..1198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1435.1.1

>prot_P-wetherbeei_contig1435.1.1 ID=prot_P-wetherbeei_contig1435.1.1|Name=mRNA_P-wetherbeei_contig1435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MSGRQPLGQAVWAGTTRRRRQQRRRGQASWLAGIDGGGSGDGRFPPLAAL
RRAALRSPHRAYPAHRSCISETAILTVEGVVFTLVASSVTYSYLECSRPT
CPAASALAARCGAARRKVRCSAARRTVTQGVSWWRRTAAAARRGGGASWC
SARWVGVAVQCTSGPVPLAARLRESAKMST*
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mRNA from alignment at P-wetherbeei_contig1435:417..1294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1435.1.1 ID=mRNA_P-wetherbeei_contig1435.1.1|Name=mRNA_P-wetherbeei_contig1435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=878bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:417..1294+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCCATGGAAGAGCCACAATTCGTTAACAAGACTGGACTTCTCGTGCA
GAAGAGCGCCCACAAGTCACGGAGGGCGGAGTAGTCAGGAGTAGGAAACA
TCGAAGCGGCGGCTGCAGGCGGAAGAATCATTTAGCTTTGGCTGTGGTAA
ACTGGTTAATATTACGGCTTAAAGTGGTGGGTGGATTGGTAAGGAATGGT
ATCAAAAGCGTAAATGATCAGCTGCAGGAGCGCGGCCGGATGAGTGGGCG
GCAGCCCCTTGGCCAAGCGGTTTGGGCGGGCACGACGCGGCGGCGACGGC
AGCAGCGGCGACGCGGGCAGGCGAGCTGGCTGGCTGGCATTGACGGCGGC
GGCAGTGGCGATGGACGATTTCCGCCCCTTGCCGCGCTCCGTCGGGCCGC
CCTCCGCTCGCCGCACCGCGCCTACCCAGCACATCGCTCTTGTATTTCTG
AGACGGCTATTCTGACTGTGGAGGGTGTGGTATTTACTCTAGTAGCGAGC
AGTGTAACTTACTCTTATCTAGAGTGCAGTCGTCCGACCTGTCCTGCCGC
GTCCGCCTTGGCGGCGCGATGCGGCGCAGCGCGGCGCAAAGTGCGGTGCA
GTGCGGCGCGTCGCACCGTGACGCAGGGGGTATCGTGGTGGCGGCGCACC
GCGGCGGCGGCGCGTCGTGGCGGCGGTGCATCGTGGTGCAGCGCGCGTTG
GGTTGGTGTTGCCGTGCAGTGCACGAGCGGCCCCGTCCCGCTCGCGGCCA
GGCTTAGGGAGTCAGCCAAAATGAGCACGTGAGGCACGAGCGCGAGGGAG
AGATTATTCTCATTTTAGTGGGGGAAGAGGGCGACCGGGGAATCCTTTAC
AGTAACATTTATTAAGAGGACTGTTCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1435:417..1294+

>mRNA_P-wetherbeei_contig1435.1.1 ID=mRNA_P-wetherbeei_contig1435.1.1|Name=mRNA_P-wetherbeei_contig1435.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1435:417..1294+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGGGCGGCAGCCCCTTGGCCAAGCGGTTTGGGCGGGCACGACGCG
GCGGCGACGGCAGCAGCGGCGACGCGGGCAGGCGAGCTGGCTGGCTGGCA
TTGACGGCGGCGGCAGTGGCGATGGACGATTTCCGCCCCTTGCCGCGCTC
CGTCGGGCCGCCCTCCGCTCGCCGCACCGCGCCTACCCAGCACATCGCTC
TTGTATTTCTGAGACGGCTATTCTGACTGTGGAGGGTGTGGTATTTACTC
TAGTAGCGAGCAGTGTAACTTACTCTTATCTAGAGTGCAGTCGTCCGACC
TGTCCTGCCGCGTCCGCCTTGGCGGCGCGATGCGGCGCAGCGCGGCGCAA
AGTGCGGTGCAGTGCGGCGCGTCGCACCGTGACGCAGGGGGTATCGTGGT
GGCGGCGCACCGCGGCGGCGGCGCGTCGTGGCGGCGGTGCATCGTGGTGC
AGCGCGCGTTGGGTTGGTGTTGCCGTGCAGTGCACGAGCGGCCCCGTCCC
GCTCGCGGCCAGGCTTAGGGAGTCAGCCAAAATGAGCACGTGA
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