mRNA_P-wetherbeei_contig14332.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14332.1.1
Unique NamemRNA_P-wetherbeei_contig14332.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: A0A2R4WWY2_9HYPH (Uncharacterized protein n=1 Tax=Methylobacterium currus TaxID=2051553 RepID=A0A2R4WWY2_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 9.550e-9
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            VVA TRR WS  QK+AI+AE D    T S+VARRHG+RS LLF
Sbjct:    2 VVAGTRRVWSPEQKRAILAEADDPATTASEVARRHGLRSGLLF 44
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: UPI000B4B2687 (transposase n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4B2687)

HSP 1 Score: 53.9 bits (128), Expect = 1.950e-7
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            VVA  RR WS A+K+A+VAE +  G  +S VARRHGI+ SLLF
Sbjct:   12 VVAEARRRWSEAEKQAVVAEAERPGVNISAVARRHGIKPSLLF 54
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: UPI0013F14C16 (transposase n=1 Tax=Lichenihabitans psoromatis TaxID=2528642 RepID=UPI0013F14C16)

HSP 1 Score: 52.4 bits (124), Expect = 4.650e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            + A TRR WS  +K+AIVAE +  G T+S VARRH + SSLLF
Sbjct:    1 MTASTRRVWSVEEKRAIVAETEAPGTTVSMVARRHNVHSSLLF 43
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: E3I0P6_RHOVT (Transposase IS3/IS911 family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) TaxID=648757 RepID=E3I0P6_RHOVT)

HSP 1 Score: 50.4 bits (119), Expect = 3.830e-6
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            VVA TRR WS  +K+AI+AE    G  +S VARRHGI+ SLLF
Sbjct:   14 VVADTRRRWSEDEKQAIIAEALQPGVNVSAVARRHGIKPSLLF 56
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: E3HZJ1_RHOVT (Transposase IS3/IS911 family protein n=2 Tax=Rhodomicrobium TaxID=1068 RepID=E3HZJ1_RHOVT)

HSP 1 Score: 49.7 bits (117), Expect = 7.590e-6
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            VVA TRR WS  +K+AI+AE    G  +S VARRHGI+ SLLF
Sbjct:   14 VVADTRRRWSDDEKQAIIAEALQPGVNVSAVARRHGIKPSLLF 56
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: A0A554TRG5_9MYCO (Transposase (Fragment) n=1 Tax=Mycobacterium sp. KBS0706 TaxID=2578109 RepID=A0A554TRG5_9MYCO)

HSP 1 Score: 47.0 bits (110), Expect = 1.530e-5
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 MTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            + RR WSR +K+ I+ E    GA++S+VARRHG+ ++LLF
Sbjct:    5 LARRRWSRDEKRLILEEARAAGASVSEVARRHGVNANLLF 44
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: A0A6B9FHL0_9HYPH (Transposase n=6 Tax=Methylobacterium TaxID=407 RepID=A0A6B9FHL0_9HYPH)

HSP 1 Score: 48.5 bits (114), Expect = 1.820e-5
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 VVAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            V A TRR+W+R +K+AI+AE +   A++S VAR HG+  SLLF
Sbjct:   11 VAAGTRRSWTREEKRAILAEAESTTASISSVARGHGLTRSLLF 53
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: UPI001C8F66B9 (transposase n=1 Tax=Mycobacterium sp. KBS0706 TaxID=2578109 RepID=UPI001C8F66B9)

HSP 1 Score: 47.0 bits (110), Expect = 2.180e-5
Identity = 20/40 (50.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   10 MTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            + RR WSR +K+ I+ E    GA++S+VARRHG+ ++LLF
Sbjct:   21 LARRRWSRDEKRLILEEARAAGASVSEVARRHGVNANLLF 60
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: UPI001405065A (transposase n=1 Tax=Methylobacterium segetis TaxID=2488750 RepID=UPI001405065A)

HSP 1 Score: 47.8 bits (112), Expect = 2.970e-5
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    4 VAMTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            +A TRR+W+R + +AIVAE +   A++S VARRHG+  SLLF
Sbjct:    1 MAGTRRSWTREETRAIVAEAERTTASVSSVARRHGLTPSLLF 42
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BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Match: A0A2G5R2I6_9CAUL (Uncharacterized protein n=2 Tax=Caulobacter sp. X TaxID=2048901 RepID=A0A2G5R2I6_9CAUL)

HSP 1 Score: 49.3 bits (116), Expect = 3.300e-5
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   13 TRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLF 129
            +RRT+S  QK+A+VAE +  GAT+S VARRHG+ +S+LF
Sbjct:  160 SRRTFSEEQKRAMVAETEAPGATVSAVARRHGVVTSMLF 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14332.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2R4WWY2_9HYPH9.550e-965.12Uncharacterized protein n=1 Tax=Methylobacterium c... [more]
UPI000B4B26871.950e-760.47transposase n=1 Tax=Rhodomicrobium TaxID=1068 RepI... [more]
UPI0013F14C164.650e-758.14transposase n=1 Tax=Lichenihabitans psoromatis Tax... [more]
E3I0P6_RHOVT3.830e-660.47Transposase IS3/IS911 family protein n=1 Tax=Rhodo... [more]
E3HZJ1_RHOVT7.590e-660.47Transposase IS3/IS911 family protein n=2 Tax=Rhodo... [more]
A0A554TRG5_9MYCO1.530e-550.00Transposase (Fragment) n=1 Tax=Mycobacterium sp. K... [more]
A0A6B9FHL0_9HYPH1.820e-553.49Transposase n=6 Tax=Methylobacterium TaxID=407 Rep... [more]
UPI001C8F66B92.180e-550.00transposase n=1 Tax=Mycobacterium sp. KBS0706 TaxI... [more]
UPI001405065A2.970e-554.76transposase n=1 Tax=Methylobacterium segetis TaxID... [more]
A0A2G5R2I6_9CAUL3.300e-558.97Uncharacterized protein n=2 Tax=Caulobacter sp. X ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14332contigP-wetherbeei_contig14332:971..1165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog426117.M446_1472
PFAMsHTH_Tnp_1
Model size195
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07483
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.29e-06
EggNOG OGsCOG2963@1|root,COG2963@2|Bacteria,1MYEC@1224|Proteobacteria,2UGY0@28211|Alphaproteobacteria,1JW8D@119045|Methylobacteriaceae
DescriptionPFAM transposase IS3 IS911 family protein
Cds size186
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.3053946-CDS-P-wetherbeei_contig14332:970..11561683186018.3053946-CDS-P-wetherbeei_contig14332:970..1156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14332 971..1156 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.314671-UTR-P-wetherbeei_contig14332:1156..11651683186018.314671-UTR-P-wetherbeei_contig14332:1156..1165Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14332 1157..1165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14332.1.1prot_P-wetherbeei_contig14332.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14332 971..1156 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14332.1.1

>prot_P-wetherbeei_contig14332.1.1 ID=prot_P-wetherbeei_contig14332.1.1|Name=mRNA_P-wetherbeei_contig14332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
MTRRTWSRAQKKAIVAEIDGGGATLSKVARRHGIRSSLLFLKPNTLGPVF
GAPPIAVSSPLF
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mRNA from alignment at P-wetherbeei_contig14332:971..1165-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14332.1.1 ID=mRNA_P-wetherbeei_contig14332.1.1|Name=mRNA_P-wetherbeei_contig14332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig14332:971..1165- (Phaeothamnion wetherbeei SAG_119_79)
GTTGTGGCGATGACACGCCGGACCTGGAGCAGAGCGCAGAAGAAGGCGAT
TGTCGCGGAGATTGACGGCGGCGGCGCCACGCTATCGAAGGTGGCCCGGC
GGCACGGCATCCGTTCGAGCCTGTTGTTTCTCAAGCCTAACACGCTCGGC
CCTGTATTTGGCGCTCCGCCGATCGCCGTCAGCTCCCCGCTGTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14332:971..1165-

>mRNA_P-wetherbeei_contig14332.1.1 ID=mRNA_P-wetherbeei_contig14332.1.1|Name=mRNA_P-wetherbeei_contig14332.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig14332:971..1165- (Phaeothamnion wetherbeei SAG_119_79)
ATGACACGCCGGACCTGGAGCAGAGCGCAGAAGAAGGCGATTGTCGCGGA
GATTGACGGCGGCGGCGCCACGCTATCGAAGGTGGCCCGGCGGCACGGCA
TCCGTTCGAGCCTGTTGTTTCTCAAGCCTAACACGCTCGGCCCTGTATTT
GGCGCTCCGCCGATCGCCGTCAGCTCCCCGCTGTTT
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