mRNA_P-wetherbeei_contig14331.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14331.1.1
Unique NamemRNA_P-wetherbeei_contig14331.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14331.1.1 vs. uniprot
Match: D7G442_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G442_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.520e-35
Identity = 75/160 (46.88%), Postives = 101/160 (63.12%), Query Frame = 1 
Query:    1 TPILAPLITVTSATYGQTTRGLRDRVAFVESQLFAIMDVQKRKEAGLLVTAEQNARCRQLDSLIAESETLGERRPRYVIVTQELQRIVDRLGGGTLELSRTEEDLNRRFGNPDPGQPKELRVEYQVAGHDSERTTSSDEVLPSGFQCNFILPRKGSSIIQ 480
            TP+LAPLI V SATYGQT  G+ +R+  V+ +L  +  +Q RK+ G+ ++ E N R   L  LI + + L +  PRYV +   LQ  V+  GGG LE    + D+N+ FGNP PG+ KELRV Y V GHDSER TS +E   SG+  NFIL R+G  ++Q
Sbjct:  215 TPMLAPLILVESATYGQTREGIDERLQLVQRELSDLFAIQNRKDIGMPLSREDNKRLMGLRPLIGDLKYLKKLTPRYVDIRARLQARVEEHGGGLLEFVAAQTDVNQLFGNPMPGKRKELRVRYLVVGHDSERLTSLEETTSSGYPRNFILQRQGQVVVQ 374
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BLAST of mRNA_P-wetherbeei_contig14331.1.1 vs. uniprot
Match: A0A7S4DIB9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIB9_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 7.970e-14
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  238 VTQELQRIVDRLGGGTLELSRTEEDLNRRFG-NPDPGQPKELRVEYQVAGHDSERTTSSDEVLPSGFQCNFILPRKGSSIIQ 480
            V  +LQR V+   G  L L R   DLN   G NP PG PK LRVEY +AGHDSE+ TSS+ V  SG+Q NFI  +K    ++
Sbjct:   11 VRAQLQRCVEAERGVRLLLRRDSTDLNALLGRNPCPGLPKNLRVEYTIAGHDSEKLTSSEVVTGSGYQRNFITSKKAVVFVE 92
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BLAST of mRNA_P-wetherbeei_contig14331.1.1 vs. uniprot
Match: A0A1V9ZDW2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDW2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.380e-7
Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 1 
Query:    4 PILAPLITVTSATYGQTTRGLRDRVAFVESQLFAIMDVQKRKEAGLLVTAEQNARCRQLDSLIAESETLGERRPRYVIVTQELQRIVDR--LGGGTLELSRTEEDLNRRFGNPDPGQPKELRVEYQVAGHDSERTTSSDEVLPSGFQCNFILPRKGSSIIQ 480
            P++AP I +  A YG   + L+ ++  +++QL    DV+++ E              Q ++  A   T  +  PR       LQR +D   + G  LELS T  +LN+  G+P PG PK L +EY++ G  S  +++ +EVL  G   NF + + G   +Q
Sbjct:  212 PLIAPAILIERALYGWPPKELQLKIVDLQAQLALGQDVKEQLE--------------QFNAFAASKTTFNDIAPR-------LQRRIDHHPIAGSKLELSETT-NLNQLCGDPCPGLPKLLLIEYKLLGFGS--SSNDNEVLNGGHIRNFAMRKAGKYKLQ 348
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14331.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G442_ECTSI2.520e-3546.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DIB9_HETAK7.970e-1450.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZDW2_9STRA1.380e-730.43Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14331contigP-wetherbeei_contig14331:207..1609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G442
Model size480
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.13e-36
EggNOG OGs2EP30@1|root,2SSCD@2759|Eukaryota
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186018.252284-CDS-P-wetherbeei_contig14331:206..3201683186018.252284-CDS-P-wetherbeei_contig14331:206..320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14331 207..320 +
1683186018.2680445-CDS-P-wetherbeei_contig14331:638..7101683186018.2680445-CDS-P-wetherbeei_contig14331:638..710Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14331 639..710 +
1683186018.2753716-CDS-P-wetherbeei_contig14331:1021..12451683186018.2753716-CDS-P-wetherbeei_contig14331:1021..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14331 1022..1245 +
1683186018.2828016-CDS-P-wetherbeei_contig14331:1539..16091683186018.2828016-CDS-P-wetherbeei_contig14331:1539..1609Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14331 1540..1609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14331.1.1prot_P-wetherbeei_contig14331.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14331 207..1609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14331.1.1

>prot_P-wetherbeei_contig14331.1.1 ID=prot_P-wetherbeei_contig14331.1.1|Name=mRNA_P-wetherbeei_contig14331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
TPILAPLITVTSATYGQTTRGLRDRVAFVESQLFAIMDVQKRKEAGLLVT
AEQNARCRQLDSLIAESETLGERRPRYVIVTQELQRIVDRLGGGTLELSR
TEEDLNRRFGNPDPGQPKELRVEYQVAGHDSERTTSSDEVLPSGFQCNFI
LPRKGSSIIQ
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mRNA from alignment at P-wetherbeei_contig14331:207..1609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14331.1.1 ID=mRNA_P-wetherbeei_contig14331.1.1|Name=mRNA_P-wetherbeei_contig14331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1403bp|location=Sequence derived from alignment at P-wetherbeei_contig14331:207..1609+ (Phaeothamnion wetherbeei SAG_119_79)
ACACCGATCCTTGCGCCGCTCATCACCGTCACTTCGGCAACCTACGGTCA
AACGACGCGCGGGTTGCGGGACCGAGTGGCCTTCGTGGAGTCACAGCTCT
TCGCCATCATGGACGTGAGCTGAAGATTGAGGATTCGGTTTTTTCACAGT
GGCTGGAATTGGAGGGGTCTCGCGGGCCACGATGTTGCGACGTGCTGGCA
TATGTTGGCGTCATTGAGTTGGGTTGAATAAGTGAATTCAGCGTCTCAAC
AAATGTACAGCCAGTTTCCTGCAGCGGAGCACGGTGGTCCCAACCGTAAG
CTTCTCAGAGGGAAGCCTTTCTCTTTTCATGGGCTAGCTAGAAGAACGCC
TGCTCGCAAAACTGACCTCGTTTCCTTGCGTTATGGCGCCGACGGCCTTC
TGGCTGCTCTTGGCACTGACGGACGTCCACAGGTGCAAAAGCGGAAGGAG
GCGGGACTGCTCGTCACCGCCGAGCAAAATGCCCGCTGCCGGCAGCTGGA
CTCGGTGAGTTGATGGCTATCATCAGCCGTTGTTTGCGAAAAGGATCCTT
AGTTCAGACTTTCTGTAGTTCCAGGAAGAAAGCCTGCCGGCCTTTCAAGT
CGAACCGGTTTCCCATGGTGCCTGTCCTTGAGAAGTATAGACCACTGGAG
CCCTGCTGATCTCTGCATGTCATGCTACGACTTTTTTTGGGGAGTTAGAT
CAGACGACGTGCCTGCCGCTTTCCCCAGGCAATAGCATCTGCCCCGTCCT
TCCTTGCCGGCAAGGACCGACTCAGCATTCCCCGATTCTGCCCAATCCAC
AACCTCCCACGGCAGCTCATCGCCGAGTCGGAGACGCTGGGCGAGCGGCG
GCCGCGCTATGTCATCGTGACGCAGGAGCTGCAGCGGATCGTTGACAGAC
TTGGCGGAGGCACCCTCGAGCTGTCCCGGACGGAAGAGGACCTGAACCGG
CGCTTCGGGAACCCGGACCCCGGCCAGCCGAAGGAACTGCGGGTGGAGTA
CCAGGTGGCGGGCCACGACAGCGAGCGCACCACGTCCAGGTGAGAGGAGC
TGTTGATTCGGGATTGACTGTTGGGGCTTTACTTCTGCCGGTTTTTTCCG
TATTCTTTCTGTATTTACTTTCAGGCTAGGAGCTCCTGCCTTACTTCTCC
CACCCGCCAGCCACCAACGACCGTTGCAGAAATTGCACTATGCTTTCCTT
TTGTCCATACAGCATCTGGCTGTGAGACTGCGTAGCTTTCGGGGAGTAGA
AAGGTTAGGGATCGCCACGGTTCGTACTGAAAAACTTAATTCACTGGGTG
TCTTTCTTCTGCTGTCGCCCTTCTCTGTGGCAGCGATGAGGTGCTGCCAA
GCGGCTTCCAATGCAATTTCATCCTCCCACGCAAGGGCTCCAGCATCATT
CAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14331:207..1609+

>mRNA_P-wetherbeei_contig14331.1.1 ID=mRNA_P-wetherbeei_contig14331.1.1|Name=mRNA_P-wetherbeei_contig14331.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig14331:207..1609+ (Phaeothamnion wetherbeei SAG_119_79)
ACACCGATCCTTGCGCCGCTCATCACCGTCACTTCGGCAACCTACGGTCA
AACGACGCGCGGGTTGCGGGACCGAGTGGCCTTCGTGGAGTCACAGCTCT
TCGCCATCATGGACGTGCAAAAGCGGAAGGAGGCGGGACTGCTCGTCACC
GCCGAGCAAAATGCCCGCTGCCGGCAGCTGGACTCGCTCATCGCCGAGTC
GGAGACGCTGGGCGAGCGGCGGCCGCGCTATGTCATCGTGACGCAGGAGC
TGCAGCGGATCGTTGACAGACTTGGCGGAGGCACCCTCGAGCTGTCCCGG
ACGGAAGAGGACCTGAACCGGCGCTTCGGGAACCCGGACCCCGGCCAGCC
GAAGGAACTGCGGGTGGAGTACCAGGTGGCGGGCCACGACAGCGAGCGCA
CCACGTCCAGCGATGAGGTGCTGCCAAGCGGCTTCCAATGCAATTTCATC
CTCCCACGCAAGGGCTCCAGCATCATTCAG
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