mRNA_P-wetherbeei_contig14316.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14316.1.1
Unique NamemRNA_P-wetherbeei_contig14316.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14316.1.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.210e-17
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1 
Query:   70 YGGAIARLTAARKKTVRLGPYL---RALADVYSTLQRELCTRGRRKTRWLVSRMCESWVETTAKRLVA-PTLRPSGGVLTFGDAHFRV--GRGGGPKKALVAAVARHF---MLREFRTSKMYPGGCGGEMVDVQEGFRVRR 465
            YG    R +A +KKT R   +L   R  A+ +  +  E   R R+++R+  SR+ +  V+  A  + A P+ R +  ++ FG+  FR   G    P+K LV A+       ML EFRTSKM PGGCGGEM DVQ G RVR+
Sbjct: 1128 YGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKN--IVLFGNGSFRAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQ 1266
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BLAST of mRNA_P-wetherbeei_contig14316.1.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 86.7 bits (213), Expect = 7.280e-17
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1 
Query:   70 YGGAIARLTAARKKTVRLGP---YLRALADVYSTLQRELCTRGRRKTRWLVSRMCESWVETTAKRLVA-PTLRPSGGVLTFGDAHFRVGRG--GGPKKALVAAVARHF---MLREFRTSKMYPGGCGGEMVDVQEGFRVRR 465
            YG    R +A +KKT R      Y R  A+ +  +  E   R R+++R+  SR+ +  V+  A  + A P+ R +  ++ FG+  FR  +G    P+K LV A+       ML EFRTSKM PGGCGGEM DVQ G RVR+
Sbjct:  501 YGRCFPRFSAVKKKTARKSSFVAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASSMAACPSDRKN--IVLFGNGSFRAKKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQ 639
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BLAST of mRNA_P-wetherbeei_contig14316.1.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.220e-15
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 1 
Query:   70 YGGAIARLTAARKKTVRLGPYL---RALADVYSTLQRELCTRGRRKTRWLVSRMCESWVETTAKRLVA-PTLRPSGGVLTFGDAHFRV--GRGGGPKKALVAAVARHF---MLREFRTSKMYPGGCGGEMVDVQEGFRVR 462
            YG    R +A +KKT R   +L   R  A+ +  +  E   R R+++R+  SR+ +  V+  A  + A P+ R +  ++ FG+  FR   G    P+K LV A+       ML EFRTSKM PGGCGGEM DVQ   + R
Sbjct: 1340 YGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKN--IVLFGNGSFRAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGDCKAR 1477
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BLAST of mRNA_P-wetherbeei_contig14316.1.1 vs. uniprot
Match: A0A6H5KSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.140e-15
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:   70 YGGAIARLTAARKKTVRLGPYL---RALADVYSTLQRELCTRGRRKTRWLVSRMCESWVETTAKRLVA-PTLRPSGGVLTFGDAHFRVGRG--GGPKKALVAAVARHF---MLREFRTSKMYPGGCGGEMVDVQEGF 453
            YG    R +A +KKT R   +L   R  A  +  +  E   R R+++R+  SR+ +  V+  A  + A P+ R +  ++ FG+  FR  +G    P+K LV A+       ML EFRTSKM PGGCGGEM DVQ G 
Sbjct:  214 YGRCFPRFSAVKKKTARKSSFLAYCRVAAKTFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKN--IVLFGNGSFRAMKGYASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGI 348
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14316.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L4M4_9PHAE4.210e-1739.72Resolvase/invertase-type recombinase catalytic dom... [more]
Q8QNA9_ESV1K7.280e-1739.72EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A6H5JVT4_9PHAE3.220e-1537.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF5_9PHAE7.140e-1538.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14316contigP-wetherbeei_contig14316:333..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size465
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.6547217-CDS-P-wetherbeei_contig14316:332..7971683186017.6547217-CDS-P-wetherbeei_contig14316:332..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14316 333..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14316.1.1prot_P-wetherbeei_contig14316.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14316 333..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14316.1.1

>prot_P-wetherbeei_contig14316.1.1 ID=prot_P-wetherbeei_contig14316.1.1|Name=mRNA_P-wetherbeei_contig14316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
RKATGADLKAKRDWKRRGRKGGNYGGAIARLTAARKKTVRLGPYLRALAD
VYSTLQRELCTRGRRKTRWLVSRMCESWVETTAKRLVAPTLRPSGGVLTF
GDAHFRVGRGGGPKKALVAAVARHFMLREFRTSKMYPGGCGGEMVDVQEG
FRVRR
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mRNA from alignment at P-wetherbeei_contig14316:333..797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14316.1.1 ID=mRNA_P-wetherbeei_contig14316.1.1|Name=mRNA_P-wetherbeei_contig14316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig14316:333..797- (Phaeothamnion wetherbeei SAG_119_79)
CGCAAGGCGACGGGCGCCGACCTCAAAGCGAAGCGCGACTGGAAGCGCCG
CGGCCGCAAGGGCGGCAACTACGGCGGGGCCATCGCACGGCTCACGGCGG
CGCGCAAGAAGACCGTGCGGCTGGGGCCGTACCTGAGGGCGCTTGCCGAC
GTCTACTCCACGCTGCAGCGGGAGCTGTGCACCCGCGGTCGCCGCAAGAC
GCGGTGGCTGGTGTCGCGCATGTGCGAGAGCTGGGTGGAGACGACGGCCA
AGCGGCTGGTAGCGCCGACGCTGCGGCCCAGCGGCGGCGTCTTGACGTTC
GGAGACGCGCACTTCCGGGTGGGGCGGGGCGGTGGCCCGAAGAAGGCGCT
GGTGGCGGCGGTGGCGCGGCACTTCATGCTCAGGGAGTTTCGGACATCGA
AGATGTACCCGGGTGGCTGCGGCGGGGAGATGGTGGACGTGCAAGAGGGG
TTCAGGGTTCGACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14316:333..797-

>mRNA_P-wetherbeei_contig14316.1.1 ID=mRNA_P-wetherbeei_contig14316.1.1|Name=mRNA_P-wetherbeei_contig14316.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig14316:333..797- (Phaeothamnion wetherbeei SAG_119_79)
CGCAAGGCGACGGGCGCCGACCTCAAAGCGAAGCGCGACTGGAAGCGCCG
CGGCCGCAAGGGCGGCAACTACGGCGGGGCCATCGCACGGCTCACGGCGG
CGCGCAAGAAGACCGTGCGGCTGGGGCCGTACCTGAGGGCGCTTGCCGAC
GTCTACTCCACGCTGCAGCGGGAGCTGTGCACCCGCGGTCGCCGCAAGAC
GCGGTGGCTGGTGTCGCGCATGTGCGAGAGCTGGGTGGAGACGACGGCCA
AGCGGCTGGTAGCGCCGACGCTGCGGCCCAGCGGCGGCGTCTTGACGTTC
GGAGACGCGCACTTCCGGGTGGGGCGGGGCGGTGGCCCGAAGAAGGCGCT
GGTGGCGGCGGTGGCGCGGCACTTCATGCTCAGGGAGTTTCGGACATCGA
AGATGTACCCGGGTGGCTGCGGCGGGGAGATGGTGGACGTGCAAGAGGGG
TTCAGGGTTCGACGG
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