mRNA_P-wetherbeei_contig14309.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14309.4.1
Unique NamemRNA_P-wetherbeei_contig14309.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A537AIC6_9PROT (Ribonuclease E n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AIC6_9PROT)

HSP 1 Score: 540 bits (1390), Expect = 1.810e-180
Identity = 295/387 (76.23%), Postives = 321/387 (82.95%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERA-GIIGRIFGWFK 1158
            LESSLVIRAIRDYFQPDIGEILIDTEEI+EQA+AFMQTVMPGNV KVKLYRDDVPLFSRFQIEHQIESA+SRQV+LPSGGA+VIDHTEALV+IDVNSARATKG DIEETA RTNLEAADEVARQLRLRDLGGLIVIDFIDMES KNQREVENRLR+AL +DRARVQ GKISRFGL+ELSRQRLQPSL E++HI CPRCSGTG IRG ESTALHVLRI+QEEAMKENTGAVH QVPVDVA+FLLNEKR+EIQKLE RLKVNI+++PN HLETPHY VQRLRHDELNEM+HVP+S+EMV+ P+E K      AE    RQ+  VK I P QPAP + E + R P      P          PQ  A  V  P    A G + RIFG FK
Sbjct:  209 LESSLVIRAIRDYFQPDIGEILIDTEEIFEQAKAFMQTVMPGNVGKVKLYRDDVPLFSRFQIEHQIESAYSRQVALPSGGAIVIDHTEALVAIDVNSARATKGGDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESQKNQREVENRLRDALKFDRARVQIGKISRFGLMELSRQRLQPSLEETAHINCPRCSGTGFIRGTESTALHVLRIMQEEAMKENTGAVHAQVPVDVASFLLNEKRAEIQKLEGRLKVNIVMVPNPHLETPHYKVQRLRHDELNEMEHVPSSYEMVERPEEPKAPGAETAEAKVERQQPVVKTITPAQPAPIVDESLPRPPRTPQPVP---------APQQAAKQVVQPVAAVAEGFLSRIFGLFK 586          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A521YN88_9PROT (Ribonuclease E n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YN88_9PROT)

HSP 1 Score: 538 bits (1386), Expect = 9.680e-180
Identity = 298/400 (74.50%), Postives = 332/400 (83.00%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQD-PSQA-QASTPA 1194
            LESSLVIRAIRDYFQPDIGE+LIDTEEIYEQA+AFMQTVMPGNV+KVK YRDDVPLFSRFQIEHQIESA+SRQV+LP+GG++VIDHTEALV+IDVNSARAT+G DIEETA RTNLEAA+EVARQLRLRDLGGLIVIDFIDMES +NQREVENRLREAL YDRARVQ GKISRFGL+ELSRQRLQPSL E++HI CPRCSGTG IRG ESTALHVLRI+QEEAMKENTGAVH+QVPVDVA+FLLNEKR+EIQKLE RLKVNI+++PN HLETPHY VQRLRH+ELNEM+HVPAS+EMV+ P+E K A  A  E  + RQEA VK I P QPAP + E + R P    E  P               PVA  A    G + R+FG FK   P+ A QA+ PA
Sbjct:  209 LESSLVIRAIRDYFQPDIGELLIDTEEIYEQAKAFMQTVMPGNVNKVKFYRDDVPLFSRFQIEHQIESAYSRQVTLPAGGSIVIDHTEALVAIDVNSARATRGGDIEETAFRTNLEAAEEVARQLRLRDLGGLIVIDFIDMESQRNQREVENRLREALKYDRARVQIGKISRFGLMELSRQRLQPSLEETAHINCPRCSGTGFIRGTESTALHVLRIMQEEAMKENTGAVHVQVPVDVASFLLNEKRAEIQKLEARLKVNIVMVPNPHLETPHYKVQRLRHEELNEMEHVPASYEMVERPEEPK-APGAEEEAKRERQEAVVKGITPAQPAPMVDESLPR-PARVPEARPAXXXXXXXXXXXXXXPVAAVA---EGFLSRLFGLFKPAAPATAPQAAAPA 603          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A536WQ82_9PROT (Ribonuclease E n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WQ82_9PROT)

HSP 1 Score: 537 bits (1383), Expect = 2.040e-179
Identity = 296/396 (74.75%), Postives = 324/396 (81.82%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQDPSQAQAST 1188
            LESSLVIRAIRDYFQPDIGEILIDTEEIYEQA+AFMQTVMPGNV+KVKLYRDDVPLFSRFQIEHQIESA+SRQV+LPSGGA+VIDHTEALV+IDVNSARATKG DIEETA RTNLEAADEVARQLRLRDLGGLIVIDFIDMES KNQREVENRLREAL +DRARVQ GKISRFGL+ELSRQRLQPSL E++HI CPRCSGTG IRG ESTALHVLRI+QEEAMKENTGAVH QVPVDVA+FLLNEKR+EIQKLE RLKVNI+++PN HLETPHY VQRLRHDELNEM+HVP+S+EMV++P+E K A  A  E    RQ+  VK I P QPAP +P    R   E+A             P     PVA  A    G++ R    FK   + A   T
Sbjct:  209 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQARAFMQTVMPGNVNKVKLYRDDVPLFSRFQIEHQIESAYSRQVALPSGGAIVIDHTEALVAIDVNSARATKGGDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESQKNQREVENRLREALKFDRARVQIGKISRFGLMELSRQRLQPSLEETAHINCPRCSGTGFIRGTESTALHVLRIMQEEAMKENTGAVHAQVPVDVASFLLNEKRAEIQKLEGRLKVNIVMVPNPHLETPHYKVQRLRHDELNEMEHVPSSYEMVEQPEEPK-APGAEPEAKIERQQPVVKTITPAQPAP-LPSEARR---EKA-----------TEPVPLVQPVAAAASAGVGLVSRFLSLFKPPATTAPMQT 588          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A0S8B5V1_9PROT (Ribonuclease E n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B5V1_9PROT)

HSP 1 Score: 538 bits (1385), Expect = 2.110e-178
Identity = 287/395 (72.66%), Postives = 329/395 (83.29%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQDPSQAQAS 1185
            LESSLVIRAIRDY+QP+IGE+LIDTEEIYEQA+AFMQTVMPGNV KVKLYRDDVPLFSRFQIEHQIESA++R V+LP+GGAVVIDHTEALV+IDVNSARAT+G DIEETA +TNLEAA+EVARQ+RLRDLGGLI++DFIDMES +NQREVENR REAL +DRARVQ GKISRFGLLELSRQRL+PSL E++HI CPRCSGTG IRG ESTALHVLRILQEEAMK+NTGAVH QVPVDVA+FLLNEKR EIQKLE RLKVNI+L+PN HL+TPHY VQRLRHDELN+M+HVPAS+E+V+ P+E   AA   AE  + R +AAV+ + PDQPAP + E     P +R   P       R +P A AA        R GII RI GWF Q+ ++  A+
Sbjct:  219 LESSLVIRAIRDYYQPEIGELLIDTEEIYEQARAFMQTVMPGNVGKVKLYRDDVPLFSRFQIEHQIESAYARHVNLPAGGAVVIDHTEALVAIDVNSARATRGGDIEETAFKTNLEAAEEVARQMRLRDLGGLIIVDFIDMESQRNQREVENRFREALRFDRARVQVGKISRFGLLELSRQRLRPSLEETAHINCPRCSGTGFIRGTESTALHVLRILQEEAMKDNTGAVHAQVPVDVASFLLNEKRGEIQKLEARLKVNIILVPNAHLDTPHYRVQRLRHDELNQMEHVPASYELVETPEEPA-AALGQAEAKRDRPQAAVQGVTPDQPAPTVVETAAMQPAQRMRAP------ARPQPAAEAA--------RPGIIRRILGWFSQERAEPAAA 598          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A522VQT5_9PROT (Rne/Rng family ribonuclease (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VQT5_9PROT)

HSP 1 Score: 523 bits (1348), Expect = 5.260e-178
Identity = 276/337 (81.90%), Postives = 303/337 (89.91%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEP 1011
            LESSLVIRAIRDY QPDIGEILIDT++IY+QA AFMQTVMP +V+KVKLYRDDVPLFSRFQIEHQIESA++R V+LPSGGAVVIDHTEALVSIDVNSARATKGHDIEETA RTNLEAADE+ARQLRLRDLGGLIVIDFIDME+ +NQR+VENR R+AL +DRARVQTGKISRFGLLELSRQRLQPSL E++H +CPRC GTG IRG ESTALHVLRILQEEAMKENTGAVH QVPVDVA+FLLNEKRSEIQKLE RLKVNI+L+PN+HLETPHY V RL+HDELN M+HVPAS+EMV+ P+E   A     E  K RQEA VKAIVP QPAP + EP
Sbjct:  217 LESSLVIRAIRDYLQPDIGEILIDTQDIYDQACAFMQTVMPASVNKVKLYRDDVPLFSRFQIEHQIESAYARHVNLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMEAQRNQRDVENRFRDALRFDRARVQTGKISRFGLLELSRQRLQPSLEETAHTSCPRCGGTGFIRGTESTALHVLRILQEEAMKENTGAVHAQVPVDVASFLLNEKRSEIQKLEARLKVNIVLVPNLHLETPHYKVARLKHDELNLMEHVPASYEMVERPEEPA-APGEEGEAKKERQEAVVKAIVPAQPAPVVAEP 552          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A1F4CP44_9PROT (Ribonuclease E (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CP44_9PROT)

HSP 1 Score: 527 bits (1358), Expect = 3.350e-176
Identity = 290/394 (73.60%), Postives = 322/394 (81.73%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQDPSQAQA 1182
            LESSLVIRAIRDYFQPDIGEILIDTEEIYEQA++FMQTVMP NV KVKLYRDDVPLFSRFQIEHQIESA+SRQV+LPSGG++VIDHTEALV+IDVNSARAT+G DIEETA RTNLEAADEVARQLRLRDLGGLIVIDFIDMES +NQREVENRLR+AL +DRARVQ GKISRFG++ELSRQRLQ SL E++HI+CPRCSGTG IRG ESTALHVLRILQEEAMKENTGAVH QVPVDV +FLLNEKR+EIQKLE RLKVNI+L+PN HL+TPHY V RL+HDELNEM+HVPAS+E+V+ P E        AEP + RQEA VKAI P+QPAP          VE+  RPPR        PQ           +R G + R+FG FK     A A
Sbjct:  206 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAKSFMQTVMPDNVGKVKLYRDDVPLFSRFQIEHQIESAYSRQVALPSGGSIVIDHTEALVAIDVNSARATRGGDIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESQRNQREVENRLRDALKFDRARVQIGKISRFGMMELSRQRLQASLEETAHISCPRCSGTGFIRGTESTALHVLRILQEEAMKENTGAVHAQVPVDVGSFLLNEKRAEIQKLEGRLKVNIVLVPNPHLDTPHYKVTRLKHDELNEMEHVPASYELVEAPQEPP-VPGQEAEPKRERQEAVVKAITPEQPAPMS--------VEQQPRPPRAPA-----PQXXXXXXXXEE-QRPGFLSRLFGLFKAPAETAPA 584          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A1F4EWV9_9PROT (Ribonuclease E n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4EWV9_9PROT)

HSP 1 Score: 528 bits (1359), Expect = 8.170e-176
Identity = 289/404 (71.53%), Postives = 328/404 (81.19%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVER-AERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQD-----PSQAQASTPA 1194
            LESSLVIRAIRDYFQPDIGEILIDTEEI EQA+ FMQTVMP NV+KVKLYRDDVPLFSRFQIEHQIESA+SRQVSLPSGG++VIDHTEALV+IDVNSARAT+G DIEETA RTNLEAA+E ARQLRLRDLGGLIVIDFIDMES +NQR+VE+R R+AL YDRARVQ GKISRFGL+ELSRQRLQ SL E++HI+CPRCSGTG IRG ESTALHVLRI+QEEAMKENTGAVH+Q+PVDVA+FLLNEKR+EIQKLE RLKVNI+L+PN HLETPHY VQRL+HDELN+M+HVP S+E+V++P E                 A VKAI P+QPAP  PE   R P  R A RP      +   PQ  A   A P+  + GIIGRIFGWF+++     P +   + PA
Sbjct:  209 LESSLVIRAIRDYFQPDIGEILIDTEEICEQAKTFMQTVMPDNVNKVKLYRDDVPLFSRFQIEHQIESAYSRQVSLPSGGSIVIDHTEALVAIDVNSARATRGGDIEETALRTNLEAAEETARQLRLRDLGGLIVIDFIDMESQRNQRDVEDRFRDALKYDRARVQIGKISRFGLMELSRQRLQASLEETAHISCPRCSGTGFIRGTESTALHVLRIMQEEAMKENTGAVHVQLPVDVASFLLNEKRTEIQKLEARLKVNIVLVPNRHLETPHYKVQRLKHDELNQMEHVPTSYELVEQP-EXXXXXXXXXXXXXXXXXAVVKAIQPEQPAPVAPE---RRPESRPAPRP------EARAPQPRAERAAAPSAAQPGIIGRIFGWFRREKPARGPGEPSLAAPA 602          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A537BZP5_9PROT (Ribonuclease E n=3 Tax=Bacteria TaxID=2 RepID=A0A537BZP5_9PROT)

HSP 1 Score: 527 bits (1358), Expect = 8.370e-176
Identity = 297/427 (69.56%), Postives = 331/427 (77.52%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLRE---------------------------ALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPN---MPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQDPSQAQASTP 1191
            LESSLVIRAIRDYFQPDIGEILIDTEEIYEQA+AFMQTVMPGNV+KVKLYRDDVPLFSRFQIEHQIESA+SRQV+LPSGGA+VIDHTEALV+IDVNSARAT+G DIEETA RTNLEAA+EVARQLRLRDLGGLIVIDFIDMES +NQR+VEN                               AL +DRARVQ GKISRFGL+ELSRQRLQPSL E++HI+CPRCSGTG IRG ESTALHVLRI+QEEAMKENTGAVH QVPVDV++FLLNEKR+EIQKLE RLKVNI+L+PN HLETPHY VQRLRH+ELNEM+HVP+S+E+V+ P+E K A    AEP + RQ A V+ I PDQPAP     P+P  RAP                +PQ  A   A  +   AGII R+FGWFK D S A A  P
Sbjct:  209 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQARAFMQTVMPGNVNKVKLYRDDVPLFSRFQIEHQIESAYSRQVALPSGGAIVIDHTEALVAIDVNSARATRGGDIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMESQRNQRDVENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALKFDRARVQIGKISRFGLVELSRQRLQPSLEETAHISCPRCSGTGFIRGTESTALHVLRIVQEEAMKENTGAVHAQVPVDVSSFLLNEKRAEIQKLEARLKVNIVLVPNPHLETPHYKVQRLRHEELNEMEHVPSSYELVERPEEPK-APGEEAEPKRERQVAVVQGITPDQPAPMPQARPQPAVRAP----------------QPQPPAVQAAR-SETHAGIINRLFGWFKAD-SAAPAPAP 616          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A521VF93_9PROT (Ribonuclease E n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VF93_9PROT)

HSP 1 Score: 523 bits (1348), Expect = 1.220e-173
Identity = 289/400 (72.25%), Postives = 321/400 (80.25%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPE--RAGIIGRIFGWFKQDPSQAQASTPA 1194
            LESSLVIRAIRDY QPDIGEILIDT++IY+QA AFMQTVMP +V+KVKLYRDDVPLFSRFQIEHQIESA++R V+LPSGGAVVIDHTEALVSIDVNSARATKGHDIEETA RTNLEAADE+ARQLRLRDLGGLIVIDFIDMES +NQR+VENR R+AL +DRARVQTGKISRFGLLELSRQRLQPSL E++H +CPRC GTG IRG ESTALHVLRILQEEAMKENTGAVH QVPVDVA+FLLNEKRSEIQKLE RLKVNI+L+PN+HLETPHY V RL+HDELN M+HVPAS+EMV+ P+E            K RQEA VKAIVP QPAP + EP             R + R   +P A             R G + R+ G FK + + A A  PA
Sbjct:  217 LESSLVIRAIRDYLQPDIGEILIDTQDIYDQACAFMQTVMPASVNKVKLYRDDVPLFSRFQIEHQIESAYARHVNLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQRNQRDVENRFRDALRFDRARVQTGKISRFGLLELSRQRLQPSLEETAHASCPRCGGTGFIRGTESTALHVLRILQEEAMKENTGAVHAQVPVDVASFLLNEKRSEIQKLEARLKVNIVLVPNLHLETPHYKVARLKHDELNLMEHVPASYEMVERPEEXXXXXXXXXXK-KERQEAVVKAIVPAQPAPVVAEP-------------RAEERPAMQPAAXXXXXXXXXXXXARGGFLSRLLGLFKAEKAPA-AQPPA 601          
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Match: A0A1F4B561_9PROT (Ribonuclease E n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B561_9PROT)

HSP 1 Score: 517 bits (1332), Expect = 3.610e-171
Identity = 281/397 (70.78%), Postives = 322/397 (81.11%), Query Frame = 1
Query:    1 LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLYRDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARATKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREVENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSGTGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEIQKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEPDEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPPRQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQD-PSQAQAST 1188
            LESSLVIRAIRDY QPDIGEILIDT++IY+QA+AFMQTVMP  V+KVKLYRDDVPLFSRFQIEHQIESA++R V+LPSGGAVVIDHTEA+V+IDVNSAR+T+G DIEETA RTNLEAADE+ARQLRLRDLGGLIVIDFIDMES +NQR+VENRLREAL +DRARVQTGKISRFGLLELSRQRL+PSL E++H +CPRC GTG IRG ESTALHVLRILQEEAMK+NTGAVH QVPVDVA+FLLNEKRSEIQ LE RLKVN++L+PN HLETPHY VQRL+HDELN M+HVPAS+E+V+ P+E      A  +  + RQEAAVK I P QPAP          V+ A               A AAP         G+I RI GWFK + P+++ A++
Sbjct:  217 LESSLVIRAIRDYLQPDIGEILIDTQDIYDQARAFMQTVMPATVNKVKLYRDDVPLFSRFQIEHQIESAYARHVNLPSGGAVVIDHTEAMVAIDVNSARSTRGSDIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESPRNQRDVENRLREALRFDRARVQTGKISRFGLLELSRQRLRPSLEETAHTSCPRCGGTGFIRGTESTALHVLRILQEEAMKDNTGAVHAQVPVDVASFLLNEKRSEIQSLEARLKVNVVLVPNSHLETPHYKVQRLKHDELNRMEHVPASYELVERPEETAPVGEAGDQR-RERQEAAVKGITPAQPAPV---------VQEARAXXXXXXXXXXXXXAEAAP--------GGLISRILGWFKSEVPAKSAAAS 595          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14309.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537AIC6_9PROT1.810e-18076.23Ribonuclease E n=1 Tax=Betaproteobacteria bacteriu... [more]
A0A521YN88_9PROT9.680e-18074.50Ribonuclease E n=2 Tax=unclassified Betaproteobact... [more]
A0A536WQ82_9PROT2.040e-17974.75Ribonuclease E n=2 Tax=Betaproteobacteria bacteriu... [more]
A0A0S8B5V1_9PROT2.110e-17872.66Ribonuclease E n=1 Tax=Betaproteobacteria bacteriu... [more]
A0A522VQT5_9PROT5.260e-17881.90Rne/Rng family ribonuclease (Fragment) n=1 Tax=Bet... [more]
A0A1F4CP44_9PROT3.350e-17673.60Ribonuclease E (Fragment) n=1 Tax=Betaproteobacter... [more]
A0A1F4EWV9_9PROT8.170e-17671.53Ribonuclease E n=1 Tax=Betaproteobacteria bacteriu... [more]
A0A537BZP5_9PROT8.370e-17669.56Ribonuclease E n=3 Tax=Bacteria TaxID=2 RepID=A0A5... [more]
A0A521VF93_9PROT1.220e-17372.25Ribonuclease E n=1 Tax=Betaproteobacteria bacteriu... [more]
A0A1F4B561_9PROT3.610e-17170.78Ribonuclease E n=1 Tax=Betaproteobacteria bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14309contigP-wetherbeei_contig14309:40..1728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159087.Daro_2005
Preferred namerne
PFAMsRNase_E_G,S1
Model size1689
Max annot lvl206389|Rhodocyclales
KEGG koko:K08300
KEGG Pathwayko03018,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.42e-169
EggNOG OGsCOG1530@1|root,COG1530@2|Bacteria,1MV65@1224|Proteobacteria,2VIE5@28216|Betaproteobacteria,2KV38@206389|Rhodocyclales
EC3.1.26.12
DescriptionEndoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs
Cds size1689
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186017.3505256-CDS-P-wetherbeei_contig14309:39..17281683186017.3505256-CDS-P-wetherbeei_contig14309:39..1728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14309 40..1728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14309.4.1prot_P-wetherbeei_contig14309.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14309 40..1728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14309.4.1

>prot_P-wetherbeei_contig14309.4.1 ID=prot_P-wetherbeei_contig14309.4.1|Name=mRNA_P-wetherbeei_contig14309.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=563bp
LESSLVIRAIRDYFQPDIGEILIDTEEIYEQAQAFMQTVMPGNVHKVKLY
RDDVPLFSRFQIEHQIESAFSRQVSLPSGGAVVIDHTEALVSIDVNSARA
TKGHDIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESNKNQREV
ENRLREALHYDRARVQTGKISRFGLLELSRQRLQPSLGESSHITCPRCSG
TGHIRGIESTALHVLRILQEEAMKENTGAVHIQVPVDVATFLLNEKRSEI
QKLETRLKVNILLIPNIHLETPHYSVQRLRHDELNEMDHVPASFEMVKEP
DEQKDAATAAAEPPKPRQEAAVKAIVPDQPAPNMPEPVERAPVERAERPP
RQDNRDRNRPQAHAAPVATPAPERAGIIGRIFGWFKQDPSQAQASTPATT
QPAAQSRAQSDAQPGSQPRRDQQRGDRNERGDRSERGGRDRNRGSRDRNR
QGGDRPQEQRGERQGEQRAERSGEQRPPRADRPPREPRPEGGNNGNGGDR
QGARRDMDQQRRDQQQGRPPREPREPREPRADQAPREPRPPMQEGEEGER
RSRRRRGGRDRDR
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mRNA from alignment at P-wetherbeei_contig14309:40..1728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14309.4.1 ID=mRNA_P-wetherbeei_contig14309.4.1|Name=mRNA_P-wetherbeei_contig14309.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig14309:40..1728- (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGTCGAGCCTCGTGATCCGCGCGATCCGCGACTACTTCCAGCCTGA CATCGGCGAAATCCTGATCGACACCGAGGAGATCTACGAGCAGGCCCAGG CGTTCATGCAGACCGTGATGCCGGGCAATGTGCACAAGGTCAAGCTCTAT CGGGACGACGTGCCGCTCTTCTCGCGCTTCCAGATCGAGCACCAGATCGA ATCGGCCTTCTCGCGCCAGGTGAGCCTGCCTTCCGGCGGCGCGGTCGTGA TCGACCACACCGAGGCGCTGGTCTCGATCGACGTGAACTCGGCCCGTGCC ACCAAGGGGCATGACATCGAGGAAACGGCGACGCGCACCAACCTCGAGGC GGCCGACGAGGTCGCCCGGCAGCTGCGCCTGCGTGACCTGGGCGGCCTGA TCGTCATCGACTTCATCGACATGGAGTCGAACAAGAACCAGCGCGAGGTG GAGAACCGCCTGCGCGAGGCGCTGCACTACGACCGCGCCCGCGTGCAGAC CGGCAAGATCTCCCGTTTCGGCCTGCTGGAGCTGTCGCGCCAGCGCCTGC AGCCCTCGCTCGGCGAGAGCAGCCATATCACCTGCCCGCGCTGCAGCGGC ACGGGCCATATCCGCGGCATCGAGTCCACCGCCCTCCACGTCCTGCGCAT CCTGCAGGAAGAGGCCATGAAGGAGAACACCGGTGCCGTGCATATCCAGG TGCCGGTCGACGTCGCGACTTTCCTGCTGAACGAGAAGCGCAGCGAGATC CAGAAGCTGGAGACGCGGCTCAAGGTCAACATCCTCCTGATCCCGAACAT CCACCTCGAGACGCCGCACTACTCCGTCCAGCGCCTGCGCCACGACGAGC TGAACGAGATGGACCACGTCCCGGCCAGCTTCGAAATGGTGAAGGAGCCT GACGAGCAGAAGGACGCGGCCACCGCTGCGGCCGAGCCGCCCAAGCCCCG CCAGGAAGCCGCCGTGAAGGCCATCGTGCCGGACCAGCCCGCGCCCAACA TGCCCGAGCCGGTCGAGCGCGCCCCGGTGGAGCGTGCCGAGCGCCCCCCG CGCCAGGACAACCGGGACCGCAATCGCCCCCAGGCCCACGCTGCCCCGGT TGCGACCCCGGCCCCGGAACGGGCGGGAATCATCGGCCGGATCTTCGGCT GGTTCAAGCAGGACCCCTCCCAGGCGCAGGCCTCGACCCCCGCCACAACG CAGCCCGCAGCCCAATCGCGCGCGCAGTCGGACGCGCAGCCGGGTTCCCA GCCGCGCCGCGACCAGCAGCGTGGCGATCGCAACGAGCGTGGTGACCGCA GCGAACGCGGCGGCCGTGACCGCAATCGCGGCAGCCGCGACCGCAATCGC CAGGGTGGCGACCGTCCGCAGGAGCAGCGCGGCGAACGCCAGGGCGAACA GCGTGCGGAACGCAGCGGAGAGCAACGCCCGCCGCGCGCGGACCGTCCGC CCCGTGAGCCGCGCCCCGAAGGCGGCAACAACGGCAATGGCGGCGACCGC CAGGGGGCTCGCCGCGACATGGACCAGCAGCGGCGCGACCAGCAGCAAGG CCGCCCCCCGCGTGAGCCGAGGGAGCCGCGCGAGCCGCGTGCCGATCAGG CTCCCCGCGAGCCGCGCCCCCCGATGCAGGAGGGCGAAGAAGGCGAACGC CGCAGCCGGCGTCGGCGTGGCGGGCGCGATCGCGATCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14309:40..1728-

>mRNA_P-wetherbeei_contig14309.4.1 ID=mRNA_P-wetherbeei_contig14309.4.1|Name=mRNA_P-wetherbeei_contig14309.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig14309:40..1728- (Phaeothamnion wetherbeei SAG_119_79)
CTCGAGTCGAGCCTCGTGATCCGCGCGATCCGCGACTACTTCCAGCCTGA
CATCGGCGAAATCCTGATCGACACCGAGGAGATCTACGAGCAGGCCCAGG
CGTTCATGCAGACCGTGATGCCGGGCAATGTGCACAAGGTCAAGCTCTAT
CGGGACGACGTGCCGCTCTTCTCGCGCTTCCAGATCGAGCACCAGATCGA
ATCGGCCTTCTCGCGCCAGGTGAGCCTGCCTTCCGGCGGCGCGGTCGTGA
TCGACCACACCGAGGCGCTGGTCTCGATCGACGTGAACTCGGCCCGTGCC
ACCAAGGGGCATGACATCGAGGAAACGGCGACGCGCACCAACCTCGAGGC
GGCCGACGAGGTCGCCCGGCAGCTGCGCCTGCGTGACCTGGGCGGCCTGA
TCGTCATCGACTTCATCGACATGGAGTCGAACAAGAACCAGCGCGAGGTG
GAGAACCGCCTGCGCGAGGCGCTGCACTACGACCGCGCCCGCGTGCAGAC
CGGCAAGATCTCCCGTTTCGGCCTGCTGGAGCTGTCGCGCCAGCGCCTGC
AGCCCTCGCTCGGCGAGAGCAGCCATATCACCTGCCCGCGCTGCAGCGGC
ACGGGCCATATCCGCGGCATCGAGTCCACCGCCCTCCACGTCCTGCGCAT
CCTGCAGGAAGAGGCCATGAAGGAGAACACCGGTGCCGTGCATATCCAGG
TGCCGGTCGACGTCGCGACTTTCCTGCTGAACGAGAAGCGCAGCGAGATC
CAGAAGCTGGAGACGCGGCTCAAGGTCAACATCCTCCTGATCCCGAACAT
CCACCTCGAGACGCCGCACTACTCCGTCCAGCGCCTGCGCCACGACGAGC
TGAACGAGATGGACCACGTCCCGGCCAGCTTCGAAATGGTGAAGGAGCCT
GACGAGCAGAAGGACGCGGCCACCGCTGCGGCCGAGCCGCCCAAGCCCCG
CCAGGAAGCCGCCGTGAAGGCCATCGTGCCGGACCAGCCCGCGCCCAACA
TGCCCGAGCCGGTCGAGCGCGCCCCGGTGGAGCGTGCCGAGCGCCCCCCG
CGCCAGGACAACCGGGACCGCAATCGCCCCCAGGCCCACGCTGCCCCGGT
TGCGACCCCGGCCCCGGAACGGGCGGGAATCATCGGCCGGATCTTCGGCT
GGTTCAAGCAGGACCCCTCCCAGGCGCAGGCCTCGACCCCCGCCACAACG
CAGCCCGCAGCCCAATCGCGCGCGCAGTCGGACGCGCAGCCGGGTTCCCA
GCCGCGCCGCGACCAGCAGCGTGGCGATCGCAACGAGCGTGGTGACCGCA
GCGAACGCGGCGGCCGTGACCGCAATCGCGGCAGCCGCGACCGCAATCGC
CAGGGTGGCGACCGTCCGCAGGAGCAGCGCGGCGAACGCCAGGGCGAACA
GCGTGCGGAACGCAGCGGAGAGCAACGCCCGCCGCGCGCGGACCGTCCGC
CCCGTGAGCCGCGCCCCGAAGGCGGCAACAACGGCAATGGCGGCGACCGC
CAGGGGGCTCGCCGCGACATGGACCAGCAGCGGCGCGACCAGCAGCAAGG
CCGCCCCCCGCGTGAGCCGAGGGAGCCGCGCGAGCCGCGTGCCGATCAGG
CTCCCCGCGAGCCGCGCCCCCCGATGCAGGAGGGCGAAGAAGGCGAACGC
CGCAGCCGGCGTCGGCGTGGCGGGCGCGATCGCGATCGC
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