mRNA_P-wetherbeei_contig14289.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14289.1.1
Unique NamemRNA_P-wetherbeei_contig14289.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A7X9AGM1_9BURK (Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AGM1_9BURK)

HSP 1 Score: 120 bits (302), Expect = 1.120e-30
Identity = 73/177 (41.24%), Postives = 106/177 (59.89%), Query Frame = 1
Query:   13 PIEVHRELPSTQTCLLER---GATSGVLVAVE-QSGGHGRHGRAWSSPAGGLWFSLAQPTSRVDGLSLVAGLALARLVKGLGLSPWIRWPNDVLIGTKKLAGILVDARWSGSQ-GCAYLGVGINVDVDPNSWAEDVRPLATSLSLTGIPRP-HLGQFLLGYLREWSALLESHARSGL 525
            PIE +  L ST    L R   GA +G+++  E Q  G G+H R+W SP GGLWF+     + V+GLSL+AGLA  R  + LG+   +RWPNDV +G +KLAGIL ++   G++   A LG+G+NV++    + E++R  ATSL+L  I +P +   F    L E   +L+ H  +GL
Sbjct:   10 PIESYPRLDSTNAEALRRAREGAPAGLILRAERQDDGRGQHQRSWHSPPGGLWFTALLRPASVEGLSLIAGLACVRATRALGVPASLRWPNDVYVGERKLAGILTESSLLGNRVDFALLGIGLNVNLRGEDFPEELRDQATSLALE-IGQPLNAEDFFERLLDELDEVLQQHHLAGL 185          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A2A6E3A5_9BACL (Bifunctional ligase/repressor BirA n=1 Tax=Candidatus Reconcilbacillus cellulovorans TaxID=1906605 RepID=A0A2A6E3A5_9BACL)

HSP 1 Score: 111 bits (277), Expect = 3.010e-26
Identity = 71/179 (39.66%), Postives = 101/179 (56.42%), Query Frame = 1
Query:   31 ELPSTQ---TCLLERGATSG-VLVAVEQSGGHGRHGRAWSSPAG-GLWFSLAQ----PTSRVDGLSLVAGLALARLVKGL-GLSPWIRWPNDVLIGTKKLAGILVDARWSGSQ-GCAYLGVGINVDVDPNSWAEDVRPLATSLSLTGIPRPHLGQFLLGYLREWSALLESHARSGLQSF 534
            E PSTQ      +  GA  G V+VA  QS G GR GR+W SP G GLWFS+      P  R+  L LV  +AL R V+ L G+S  ++WPND+L+G +K AGIL+++     +     +G+G+NV+ DP+ + E +R  ATSLS     R    + L G+L E+  + E +   G + F
Sbjct:   86 ESPSTQDVAAAWIREGAGEGAVVVADRQSAGRGRMGRSWHSPPGTGLWFSVILKPNIPVYRIPQLGLVTAVALCRAVRFLAGVSAALKWPNDLLVGDRKAAGILLESSAEDERVRHVVVGIGVNVNADPDRFPEPIRHTATSLSKEAGRRLSRAELLAGFLGEFERMYELYLTEGFEPF 264          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: I0BIB7_9BACL (Bifunctional ligase/repressor BirA n=3 Tax=Paenibacillus mucilaginosus TaxID=61624 RepID=I0BIB7_9BACL)

HSP 1 Score: 105 bits (261), Expect = 6.100e-24
Identity = 71/182 (39.01%), Postives = 101/182 (55.49%), Query Frame = 1
Query:   16 IEVHRELPSTQT---CLLERGATSGVLVAVEQ-SGGHGRHGRAWSSPAG-GLWFSLAQ-----PTSRVDGLSLVAGLALARLVKG-LGLSPWIRWPNDVLIGTKKLAGILVDARWS-GSQGCAYLGVGINVDVDPNSWAEDVRPLATSLSL-TGIPRPHLGQFLLGYLREWSALLESHARSG 522
            I  H+E+ STQT    LL  GA  G L+  EQ + G GR GR W SP G GLW SL       P S    L+L+  +AL R V+   G+   I+WPND+L+G +K++GIL+++R    S      GVGI+V++    + E +R  ATSL++  G P   + Q L  +L+EW  L + +   G
Sbjct:   82 IHYHQEVESTQTTALALLAEGAPEGTLILAEQQTAGRGRQGRPWISPKGKGLWMSLVLKPAGLPISCTPQLTLLVAVALCRAVRAETGVEAGIKWPNDLLVGGRKISGILLESRAEDASLQHIIAGVGISVNLTEEDYPEGLRETATSLAIEAGRPVDRM-QLLCRFLQEWEQLYKLYLEQG 262          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A2R6CKL3_9EURY (Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Halobacteriales archaeon QH_10_65_19 TaxID=1919147 RepID=A0A2R6CKL3_9EURY)

HSP 1 Score: 103 bits (257), Expect = 1.880e-23
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   16 IEVHRELPSTQTC---LLERGATSGVLVAVEQSGGHGRHGRAWSSPAGGLWFSL----AQPTSRVDGLSLVAGLALARLVKGLGLSPWIRWPNDVLIGTKKLAGILVDARWSGSQ-GCAYLGVGINVDVDPNSWAEDVRPLAT 420
            +E H  + ST      L E GA   V++A EQSGG GR  R W+SP+GG+W S+      P +R    +L A +A AR V+G G+   I+WPNDVL+G +KLAGIL +      +     +GVGIN +VD +    D RP+ T
Sbjct:   77 VEYHETIDSTNRRARELAETGAEDVVVLADEQSGGRGRLDREWASPSGGIWLSVLLRPGVPPTRAPAFTLAAAVATARAVRGAGVDASIKWPNDVLVGDRKLAGILTEMEGEADRVSWLIVGVGINANVDASELPGD-RPVTT 218          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A1F4Q4I1_9BACT (Biotin--[biotin carboxyl-carrier protein] ligase n=2 Tax=unclassified candidate division NC10 TaxID=1207073 RepID=A0A1F4Q4I1_9BACT)

HSP 1 Score: 101 bits (251), Expect = 6.930e-23
Identity = 74/179 (41.34%), Postives = 100/179 (55.87%), Query Frame = 1
Query:   13 PIEVHRELPSTQTCLL---ERGATSGVLVAVE-QSGGHGRHGRAWSSPAG-GLWFSLA----QPTSRVDGLSLVAGLALARLVKGL-GLSPWIRWPNDVLIGTKKLAGIL-----VDARWSGSQGCAYL--GVGINVDVDPNSWAEDVRPLATSLSLTG---IPRPHLGQFLLGYLREW 489
            P+EV  E+ ST   +L     GA  G+ V  + Q+ G GR GRAW+SP G GL+ S+     QP + V  L+LVAGLA+A  ++ + GL P ++WPND+L+  +K+AGIL     VDAR        YL  G+GINV+       ED+ P+ATSL L     IPR  L   L   +  W
Sbjct:   24 PLEVVEEIGSTNDAVLAAGRSGAPEGLAVLADRQTAGRGRRGRAWASPPGVGLYTSVLLRPEQPPALVPLLTLVAGLAVAEAIREVAGLDPLLKWPNDLLLDGRKVAGILTEMASVDAR------VVYLAVGIGINVNHGARDLPEDLLPVATSLHLASGRTIPRCDLAAALYNSMDRW 196          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A523IYR4_9BACT (Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A523IYR4_9BACT)

HSP 1 Score: 101 bits (251), Expect = 7.200e-23
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   55 LLERGATSGVLVAV-EQSGGHGRHGRAWSSPAG-GLWFSL----AQPTSRVDGLSLVAGLALARLVKGLG-LSPWIRWPNDVLIGTKKLAGILVDARWSGSQGCAY-LGVGINVDVDPNSWAEDVRPLATSL 426
            L + G   G L+   EQ+ GHGR GR W +PA  GLWFS+     QPT     +SL+A +ALA+ ++ +  LSP ++WPNDVLI +KK++GIL+++++S ++  +  LG+GINV+     + E++R  ATSL
Sbjct:   40 LAQNGEGCGTLILTNEQTEGHGRQGRRWYAPANAGLWFSIILEPTQPTDMFGLVSLLAAVALAKTIERITFLSPALKWPNDVLINSKKVSGILLESQFSNNRSASLVLGIGINVNQKQTDFPEEIRQTATSL 171          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A534JHP6_9EURY (Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A534JHP6_9EURY)

HSP 1 Score: 99.8 bits (247), Expect = 2.130e-22
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 1
Query:   55 LLERGATSG-VLVAVEQSGGHGRHGRAWSSPAGGLWFSLA-QPTSR-VDGLSLVAGLALARLVKGLGLSPWIRWPNDVLIGTKKLAGILVDARWSGSQGCAYLGVGINVDVDPNSWAEDVRPLATSL 426
            LL  GA  G +LVA  QS G GRHGR W+SP GGL+ SL  +P  + V  L L++G+ + + ++  G+   ++WPNDV+   KK+AGIL +  + GS+  A +GVG+N  +D     EDVR  ATS+
Sbjct:   38 LLGHGAEEGTILVAKRQSAGKGRHGRVWASPPGGLYVSLVVRPEPQYVVTLGLLSGIPVVKALRHFGVFASLKWPNDVVFMEKKIAGILSEGVYRGSEFYAVVGVGVNTTIDLERLPEDVRARATSV 164          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A2N0L185_9CHLR (Biotin--[biotin carboxyl-carrier protein] ligase n=1 Tax=SAR202 cluster bacterium Io17-Chloro-G2 TaxID=1926611 RepID=A0A2N0L185_9CHLR)

HSP 1 Score: 99.8 bits (247), Expect = 2.170e-22
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   28 RELPSTQT---CLLERGATSGVLVAVE-QSGGHGRHGRAWSSPAGGLWFSLA-QPT-SRVDGLSLVAGLALARLV-KGLGLSPWIRWPNDVLIGTKKLAGILVDARWSGSQGC-AYLGVGINVDVDPNSWAEDVRPLATSL-SLTGIP 444
            +E+PST      L   GA  G +V  E Q+ G GR GR W SP G ++ S+  +PT   +  LSL+AG+A A+ + K  GLSP I+WPNDV++  KK++GILV++   G   C A LG+G+NV +DP S +E+   +ATSL + TG P
Sbjct:   27 QEIPSTMNEAARLAREGAADGTVVVAETQTAGRGRFGRNWVSPGGNIYMSVIFRPTLDALPFLSLLAGVATAQTIRKTTGLSPKIKWPNDVILHGKKVSGILVESVMEGGAVCYAVLGIGLNVALDP-SQSEETSGIATSLEAATGKP 173          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: A0A1Q7F1F3_9CHLR (Biotin--[biotin carboxyl-carrier protein] ligase n=1 Tax=Chloroflexi bacterium 13_1_40CM_68_21 TaxID=1805084 RepID=A0A1Q7F1F3_9CHLR)

HSP 1 Score: 99.4 bits (246), Expect = 2.590e-22
Identity = 65/148 (43.92%), Postives = 87/148 (58.78%), Query Frame = 1
Query:   16 IEVHRELPSTQTCLLE---RGATSGVLVAVEQSGGHGRHGRAWSSPA-GGLWFS-LAQPTSRVDGL-SLVAGLALARLVKGLGLS-PWIRWPNDVLIGTKKLAGILVDARWSGSQGCAYLGVGINVDVDPNSWAEDVRPLATSLSLTG 438
            IE H  LPSTQ    E    GA   V+VA EQ+ G G HGR+W +PA  GL  S L +P      L +L+AG+A+AR +  LG++   ++WPNDV +G KK+AG L  A   G  G   LG+G+NV    + +  D+R  ATSL+L G
Sbjct:   23 IEYHASLPSTQDRARELAGSGAPPLVVVAEEQTDGRGTHGRSWLAPARAGLLASWLFRPAPAEPALFALLAGVAVARALDALGVTGARLKWPNDVEVGQKKVAGALAHATTDGEGGSLVLGIGVNVHQRRDDFPPDLRESATSLALAG 170          
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Match: UPI001BDCB520 (biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Synechococcus sp. LA31 TaxID=2741953 RepID=UPI001BDCB520)

HSP 1 Score: 99.4 bits (246), Expect = 2.590e-22
Identity = 70/164 (42.68%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   58 LERGATSG-----VLVAVEQSGGHGRHGRAWSSPAGGLWFSLAQP-TSRVDG---LSLVAGLALARLVKGLGLSPWIRWPNDVLIGTKKLAGILVDARWSGSQ-GCAYLGVGINVDVDPNSWAEDVRPLATSLSLTGIPRPHLGQFLLGYLR--EWSALLESHA 513
            LERG ++G      L+A +Q  GHG+ GR W SP GG+W S A P  +  DG   LSL A L +A  ++ LGL P I+WPND+L+  +KLAGIL   RW G Q   A LGVGIN     N        LA +L L G P+    +     LR  EW+A     A
Sbjct:   41 LERGLSAGWMPPVALMAQQQRYGHGQQGRLWLSPPGGVWLSAALPWPAAPDGCASLSLAAALGIALQLEPLGLRPQIKWPNDLLLEGRKLAGILPRLRWRGPQVRYAQLGVGIN---GVNRVPAGAINLAEALGLCGHPQAQPARLAALVLRGLEWAAAAAGQA 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AGM1_9BURK1.120e-3041.24Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Bu... [more]
A0A2A6E3A5_9BACL3.010e-2639.66Bifunctional ligase/repressor BirA n=1 Tax=Candida... [more]
I0BIB7_9BACL6.100e-2439.01Bifunctional ligase/repressor BirA n=3 Tax=Paeniba... [more]
A0A2R6CKL3_9EURY1.880e-2341.96Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Ha... [more]
A0A1F4Q4I1_9BACT6.930e-2341.34Biotin--[biotin carboxyl-carrier protein] ligase n... [more]
A0A523IYR4_9BACT7.200e-2343.18Biotin--[acetyl-CoA-carboxylase] ligase n=2 Tax=Ca... [more]
A0A534JHP6_9EURY2.130e-2244.09Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Eu... [more]
A0A2N0L185_9CHLR2.170e-2244.59Biotin--[biotin carboxyl-carrier protein] ligase n... [more]
A0A1Q7F1F3_9CHLR2.590e-2243.92Biotin--[biotin carboxyl-carrier protein] ligase n... [more]
UPI001BDCB5202.590e-2242.68biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Sy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14289contigP-wetherbeei_contig14289:65..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog522306.CAP2UW1_0244
Preferred namebirA
PFAMsBPL_C,BPL_LplA_LipB,HTH_11
Model size534
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC00043,RC00070,RC00096,RC02896
KEGG koko:K03524
KEGG ReactionR01074,R05145
KEGG Pathwayko00780,ko01100,map00780,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-23
EggNOG OGsCOG0340@1|root,COG0340@2|Bacteria,1MWCC@1224|Proteobacteria,2VNXD@28216|Betaproteobacteria,1KQ3Y@119066|unclassified Betaproteobacteria
EC6.3.4.15
DescriptionBirA family transcriptional regulator, biotin operon repressor
Cds size534
COG categoryH
BRITEko00000,ko00001,ko01000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186016.2790968-CDS-P-wetherbeei_contig14289:64..5981683186016.2790968-CDS-P-wetherbeei_contig14289:64..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14289 65..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14289.1.1prot_P-wetherbeei_contig14289.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14289 65..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14289.1.1

>prot_P-wetherbeei_contig14289.1.1 ID=prot_P-wetherbeei_contig14289.1.1|Name=mRNA_P-wetherbeei_contig14289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=178bp
AWTHPIEVHRELPSTQTCLLERGATSGVLVAVEQSGGHGRHGRAWSSPAG
GLWFSLAQPTSRVDGLSLVAGLALARLVKGLGLSPWIRWPNDVLIGTKKL
AGILVDARWSGSQGCAYLGVGINVDVDPNSWAEDVRPLATSLSLTGIPRP
HLGQFLLGYLREWSALLESHARSGLQSF
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mRNA from alignment at P-wetherbeei_contig14289:65..598-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14289.1.1 ID=mRNA_P-wetherbeei_contig14289.1.1|Name=mRNA_P-wetherbeei_contig14289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig14289:65..598- (Phaeothamnion wetherbeei SAG_119_79)
GCCTGGACCCACCCTATTGAAGTTCATCGCGAGCTTCCTTCGACGCAGAC CTGTCTGCTGGAGCGAGGAGCGACCTCGGGGGTTCTTGTGGCCGTGGAGC AAAGTGGGGGGCACGGCCGCCACGGTCGGGCCTGGAGCTCTCCCGCCGGG GGGCTCTGGTTCTCCCTGGCCCAGCCGACAAGTCGAGTCGACGGCCTGTC CCTGGTGGCCGGGCTGGCTTTGGCGCGGCTGGTGAAGGGCCTGGGGCTCT CGCCCTGGATTCGCTGGCCCAACGATGTCTTGATCGGGACGAAGAAGCTT GCGGGAATTCTCGTTGACGCTCGCTGGTCGGGGAGCCAGGGCTGCGCTTA TCTGGGAGTGGGCATCAATGTGGACGTAGACCCAAATTCATGGGCGGAGG ACGTGCGGCCTCTGGCTACCTCACTGAGCTTGACCGGGATTCCTCGGCCC CATCTAGGACAGTTCTTGCTCGGATACCTGAGAGAGTGGAGCGCTCTCCT GGAGTCCCACGCGCGTTCGGGGCTTCAGTCATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14289:65..598-

>mRNA_P-wetherbeei_contig14289.1.1 ID=mRNA_P-wetherbeei_contig14289.1.1|Name=mRNA_P-wetherbeei_contig14289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=534bp|location=Sequence derived from alignment at P-wetherbeei_contig14289:65..598- (Phaeothamnion wetherbeei SAG_119_79)
GCCTGGACCCACCCTATTGAAGTTCATCGCGAGCTTCCTTCGACGCAGAC
CTGTCTGCTGGAGCGAGGAGCGACCTCGGGGGTTCTTGTGGCCGTGGAGC
AAAGTGGGGGGCACGGCCGCCACGGTCGGGCCTGGAGCTCTCCCGCCGGG
GGGCTCTGGTTCTCCCTGGCCCAGCCGACAAGTCGAGTCGACGGCCTGTC
CCTGGTGGCCGGGCTGGCTTTGGCGCGGCTGGTGAAGGGCCTGGGGCTCT
CGCCCTGGATTCGCTGGCCCAACGATGTCTTGATCGGGACGAAGAAGCTT
GCGGGAATTCTCGTTGACGCTCGCTGGTCGGGGAGCCAGGGCTGCGCTTA
TCTGGGAGTGGGCATCAATGTGGACGTAGACCCAAATTCATGGGCGGAGG
ACGTGCGGCCTCTGGCTACCTCACTGAGCTTGACCGGGATTCCTCGGCCC
CATCTAGGACAGTTCTTGCTCGGATACCTGAGAGAGTGGAGCGCTCTCCT
GGAGTCCCACGCGCGTTCGGGGCTTCAGTCATTT
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