mRNA_P-wetherbeei_contig1427.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1427.2.1
Unique NamemRNA_P-wetherbeei_contig1427.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1427.2.1 vs. uniprot
Match: A0A6H5KJJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.960e-7
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 2 
Query: 1169 FQSQLRITVERTFGLLVGRWGILWSLLRLDLCNVPRVLSALPLLHNFL---QVRGAELSTPEPGSVEETQRPLTPAGRASDLFETPRAAA*TAN*S-AMREIIEGLLVQNGAVRLVRNIARN 1522
            F SQLR+T+E+ FG+LVG+WGI+W  LR+       +++AL  LHNFL   +V+    S  E G     +  LT  G   + F+T    A T +   A R  +  +L      R + N+ RN
Sbjct:   30 FLSQLRLTIEQAFGILVGQWGIMWRPLRVLFAGRSSLITALFRLHNFLCDEKVKPVHPSE-EDGESGRDRPQLTEDGTLQEGFQTTSKVAPTRSGDVATRMALRMMLDNKRQYRPLYNLVRN 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1427.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJJ9_9PHAE2.960e-735.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1427contigP-wetherbeei_contig1427:1260..2830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SID8
PFAMsDDE_Tnp_4
Model size1571
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3e-06
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Descriptionnuclease activity
Cds size411
COG categoryB
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.621203-UTR-P-wetherbeei_contig1427:1259..22801683186015.621203-UTR-P-wetherbeei_contig1427:1259..2280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1427 1260..2280 +
1683186015.6414313-UTR-P-wetherbeei_contig1427:2691..28301683186015.6414313-UTR-P-wetherbeei_contig1427:2691..2830Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1427 2692..2830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.632065-CDS-P-wetherbeei_contig1427:2280..26911683186015.632065-CDS-P-wetherbeei_contig1427:2280..2691Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1427 2281..2691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1427.2.1prot_P-wetherbeei_contig1427.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1427 2281..2691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1427.2.1

>prot_P-wetherbeei_contig1427.2.1 ID=prot_P-wetherbeei_contig1427.2.1|Name=mRNA_P-wetherbeei_contig1427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MPSECSKPHRSTQLGAEMTGMRGWQESSAGAAVETLPLGYYAIEGHVHFF
QSQLRITVERTFGLLVGRWGILWSLLRLDLCNVPRVLSALPLLHNFLQVR
GAELSTPEPGSVEETQRPLTPAGRASDLFETPRAAA*
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mRNA from alignment at P-wetherbeei_contig1427:1260..2830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1427.2.1 ID=mRNA_P-wetherbeei_contig1427.2.1|Name=mRNA_P-wetherbeei_contig1427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1571bp|location=Sequence derived from alignment at P-wetherbeei_contig1427:1260..2830+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAAACTTGTGAATAGAATTCTATTTAAGGAACAACGAAGATGTCCTC
CTTTGCTTTGGGGTTTTCTTCGTGCTCGTGCTCGCACTTGATGCTGACTG
TGATAGAACTCGCGAACGCGGCCCTGTACTGAGGAGGCTGACTTGGCAGT
ACATTCGCGATGTCGCCGTCCACGAGAGGCAGTTTTAGACAAATTGTTGG
CTTTCTCCAGTGCATTGTGATCAGCTCTTACAGATTTTACGGCCGAGCTT
GGAATTCAACGCGTACATTGGCGATCTACGTGGGCTTTGTCGAACCTGAA
AACCAGCTGATATCACCCTGTGCTACCTAGGCGGAGGGAGGTACAAAGAT
ATCAAGAACCACCACGGCATCGCCAAGACTACGTTCTATGACATCGTTGG
CGCGCTATAGATGCCATCAACTCCGCCGACGTTTTGAAATTTCCCGGTCT
TCCGGTTGGGAGCGGAAGAGTGCGCGCAAGCTGCGGCCGGGTTCCAACGT
CGGAGCCGAGCTAGCTTTGCATGTAGAGGATGCGTCTCCTCCGTGGTAAG
ATATCCTTTTTGCCAAGGTTGAATTTCAAGCTGCAGCTCTGGATTCCTGC
AAGGCAAGGCTTCGGTCCGCCTGTTTACAATCCCTTGTTTCTTCGTACGC
GAAGCATACCTCCTTTCAGCGCTGTATGAATTCCCTGTTCATGTTTGCAG
GCAGGATAGGCTCTTATTACGAATCAAAAGCCCGTCTGCGATGGATACGT
TGAACGTCAAGCGCTATTACTCAGGGCACAAATGCGGCTTCGGCGTCAAC
TTGCAGGCATCAAAGTGACGCCCGCGTTATTACCCCGTCTCGCATTCGGC
GTCCTAGATGGGAGAAACGTTGCTCTTTTTCGTCGTGGTGTTTTCCGTTC
TTTACATCTTACTTTGCGGTGTCATGTGCGCTTATACTTTGCTGCAAGCT
GCCGTCTCTTGACGACCTGTCGCCGTTCTTTGCTCTTCACTTGCAACCTG
GCGTTCCGTAAGACTGTGTGAATGCCGTCTGAGTGTTCCAAACCGCATCG
TTCAACACAACTGGGAGCAGAAATGACTGGAATGCGTGGCTGGCAGGAGT
CTTCGGCTGGTGCTGCGGTCGAGACACTACCGCTTGGCTACTACGCCATC
GAAGGACACGTTCATTTTTTTCAGTCACAACTTCGCATTACCGTTGAACG
TACATTCGGCCTTCTCGTCGGGCGCTGGGGGATTCTCTGGAGCCTGCTAC
GGCTGGATCTGTGCAACGTGCCGCGTGTGCTGTCAGCACTGCCCCTGCTA
CACAACTTTCTGCAGGTCAGAGGCGCCGAGCTCTCAACACCAGAGCCGGG
CAGCGTTGAAGAAACGCAGCGGCCGCTGACGCCCGCCGGGCGGGCCAGTG
ACCTCTTTGAGACACCGCGGGCAGCCGCATGAACTGCAAACTGAAGTGCA
ATGCGAGAAATTATTGAGGGCCTCTTGGTGCAGAACGGCGCAGTTCGACT
GGTGCGAAATATCGCGCGCAATTGGGCGGCGAGCAGAGCGCCGTTTGCTT
GAAAGTAAAATGAAATCCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1427:1260..2830+

>mRNA_P-wetherbeei_contig1427.2.1 ID=mRNA_P-wetherbeei_contig1427.2.1|Name=mRNA_P-wetherbeei_contig1427.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig1427:1260..2830+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGTCTGAGTGTTCCAAACCGCATCGTTCAACACAACTGGGAGCAGA
AATGACTGGAATGCGTGGCTGGCAGGAGTCTTCGGCTGGTGCTGCGGTCG
AGACACTACCGCTTGGCTACTACGCCATCGAAGGACACGTTCATTTTTTT
CAGTCACAACTTCGCATTACCGTTGAACGTACATTCGGCCTTCTCGTCGG
GCGCTGGGGGATTCTCTGGAGCCTGCTACGGCTGGATCTGTGCAACGTGC
CGCGTGTGCTGTCAGCACTGCCCCTGCTACACAACTTTCTGCAGGTCAGA
GGCGCCGAGCTCTCAACACCAGAGCCGGGCAGCGTTGAAGAAACGCAGCG
GCCGCTGACGCCCGCCGGGCGGGCCAGTGACCTCTTTGAGACACCGCGGG
CAGCCGCATGA
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