mRNA_P-wetherbeei_contig14265.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14265.1.2
Unique NamemRNA_P-wetherbeei_contig14265.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14265.1.2 vs. uniprot
Match: D7FU19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU19_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 5.860e-17
Identity = 73/186 (39.25%), Postives = 99/186 (53.23%), Query Frame = 2 
Query:   50 MLIYTVVASVLPSE---HGGSGNDGA-----PLDILSGGPQHDVLASYAWFQFSGNFADMGARLIDALPRRASQEKKPTKQKRSKDRQQRDVDGAQGRGDG------VQRFRYQCDPYFFNQLVTRELLFLCMTDQFSSEAEVFEYLEIVKDAVLAAFERMAGATVADK-RRAASLALVESLSRFT 562
            MLI+T VAS+ P +   H       A     P D LSGG + +VLASY  F + GNF+D+  RL+D LP ++       K      R  RD  G   R DG      ++R R+    + F   VT EL  LC+TD    + EVF YL +V++AV +A   +  A  A+  RRAASLALVES++ +T
Sbjct:    1 MLIHTAVASLAPRQAMRHRKGRQRKAVSLTPPSDFLSGGDR-EVLASYTAFSYQGNFSDVVCRLMDTLPHQSPASGMGRK------RLGRDRAGGGSRTDGGGGLTGIERVRHHDGDHVFYLYVTAELGILCVTDGIPVDQEVFAYLALVEEAVSSAVAPLRRAADAETVRRAASLALVESMNTWT 179
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BLAST of mRNA_P-wetherbeei_contig14265.1.2 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.270e-16
Identity = 74/189 (39.15%), Postives = 97/189 (51.32%), Query Frame = 2 
Query:   50 MLIYTVVASVLPSE----HGGSGNDGA----PLDILSGGPQHDVLASYAWFQFSGNFADMGARLIDALPRRASQEKKPTKQKRSKDRQQRDVDGAQGRGDG------VQRFRYQCDPYFFNQLVTRELLFLCMTDQFSSEAEVFEYLEIVKDAVLAAFERMA-GATVADKRRAASLALVESLSRFTPSA 571
            MLI+T VAS+ P +      G          P D LSGG + +VLASY  F + GNF+D+  RLID LP ++       K      R  RD  G + R DG      V+R R+    + F   VT EL  LC+TD    + EVF YL +V+ AV +A   +   A V   RRAA LALVES++ +T  A
Sbjct:    1 MLIHTAVASLAPRQAMRQRKGRQRKAVSLTPPSDFLSGGDR-EVLASYTAFSYQGNFSDVACRLIDTLPHQSPSSGMGRK------RLGRDRAGGESRTDGGGGLTGVERVRHHDGDHVFYLYVTAELGILCVTDGIPIDQEVFGYLALVEKAVSSAVAPLRRAADVEAVRRAAKLALVESMNTWTSQA 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14265.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU19_ECTSI5.860e-1739.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR82_9PHAE2.270e-1639.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14265contigP-wetherbeei_contig14265:259..1284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size734
Hectar predicted targeting categoryother localisation
Exons3
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.4612663-UTR-P-wetherbeei_contig14265:258..2681683186015.4612663-UTR-P-wetherbeei_contig14265:258..268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14265 259..268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.471932-CDS-P-wetherbeei_contig14265:268..5261683186015.471932-CDS-P-wetherbeei_contig14265:268..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14265 269..526 +
1683186015.4819353-CDS-P-wetherbeei_contig14265:656..8541683186015.4819353-CDS-P-wetherbeei_contig14265:656..854Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14265 657..854 +
1683186015.4914012-CDS-P-wetherbeei_contig14265:1017..12841683186015.4914012-CDS-P-wetherbeei_contig14265:1017..1284Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14265 1018..1284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14265.1.2prot_P-wetherbeei_contig14265.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14265 269..1284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14265.1.2

>prot_P-wetherbeei_contig14265.1.2 ID=prot_P-wetherbeei_contig14265.1.2|Name=mRNA_P-wetherbeei_contig14265.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MVAQVPGALSCGHMLIYTVVASVLPSEHGGSGNDGAPLDILSGGPQHDVL
ASYAWFQFSGNFADMGARLIDALPRRASQEKKPTKQKRSKDRQQRDVDGA
QGRGDGVQRFRYQCDPYFFNQLVTRELLFLCMTDQFSSEAEVFEYLEIVK
DAVLAAFERMAGATVADKRRAASLALVESLSRFTPSAPPPPPAPPYLPGA
LPPSSLAGSHSLGPAAAARQPQRYIAPSGPPYAATPAVTAA
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mRNA from alignment at P-wetherbeei_contig14265:259..1284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14265.1.2 ID=mRNA_P-wetherbeei_contig14265.1.2|Name=mRNA_P-wetherbeei_contig14265.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1026bp|location=Sequence derived from alignment at P-wetherbeei_contig14265:259..1284+ (Phaeothamnion wetherbeei SAG_119_79)
GTCACGCGCAATGGTGGCGCAGGTGCCAGGCGCGCTTTCGTGCGGCCACA
TGTTGATTTACACGGTGGTGGCCTCCGTGCTCCCGTCTGAGCACGGCGGG
AGTGGAAATGATGGCGCACCGCTCGACATCTTATCCGGCGGGCCACAACA
CGACGTTCTCGCATCCTACGCATGGTTTCAGTTCTCTGGGAACTTCGCCG
ACATGGGTGCAAGACTCATCGACGCGCTGCCGCGCCGGGCAAGCCAGGAG
AAGAAGCCCACCAAGCAGGTCTGTGATGCAACCTCGCCTCTAACCCTGGG
AAGAAGTCAACAACGCGCGCTTGCAATCTCCTCGCGTTGTTGCTTTGGGC
TATCTGTACTCACACGGCACTGATTCCGGCGGTTGCGGCGCGATGCAGAA
GCGGTCGAAGGATCGGCAGCAGCGGGACGTCGACGGTGCACAAGGACGCG
GCGACGGCGTGCAGCGCTTTCGATACCAGTGCGATCCCTACTTTTTCAAC
CAGCTGGTGACGCGCGAGCTCCTCTTCCTGTGCATGACTGATCAGTTCTC
TTCGGAGGCAGAGGTCTTTGAGTACCTCGAAATCGTCAAGGACGCTGTGA
GTCTAATCTTCTTAAGCTGCGTTCCAATATCCCCACTAAAACAGTTCGCC
TGTCCTGGTTGGATTTCTGCAGGCCGTCTCGCTGTTTTCAGGTTTCATGT
TTCAATGATGAATCTTTTCACAGACCGAAGCGAGCAGCCAGCTATTTACG
CCTCCGCAGGTCTTGGCAGCGTTCGAGCGAATGGCTGGCGCGACAGTGGC
TGATAAGCGGCGTGCGGCGTCTCTGGCTCTGGTAGAGAGTTTGAGCCGAT
TCACACCGTCGGCGCCACCGCCGCCGCCGGCCCCGCCATACTTGCCGGGC
GCCCTGCCACCGTCTTCGCTGGCCGGCAGCCACAGCCTCGGCCCGGCGGC
AGCGGCGCGGCAGCCGCAGCGATACATCGCGCCGTCGGGCCCGCCGTACG
CCGCGACGCCGGCCGTCACAGCGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14265:259..1284+

>mRNA_P-wetherbeei_contig14265.1.2 ID=mRNA_P-wetherbeei_contig14265.1.2|Name=mRNA_P-wetherbeei_contig14265.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig14265:259..1284+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGCGCAGGTGCCAGGCGCGCTTTCGTGCGGCCACATGTTGATTTA
CACGGTGGTGGCCTCCGTGCTCCCGTCTGAGCACGGCGGGAGTGGAAATG
ATGGCGCACCGCTCGACATCTTATCCGGCGGGCCACAACACGACGTTCTC
GCATCCTACGCATGGTTTCAGTTCTCTGGGAACTTCGCCGACATGGGTGC
AAGACTCATCGACGCGCTGCCGCGCCGGGCAAGCCAGGAGAAGAAGCCCA
CCAAGCAGAAGCGGTCGAAGGATCGGCAGCAGCGGGACGTCGACGGTGCA
CAAGGACGCGGCGACGGCGTGCAGCGCTTTCGATACCAGTGCGATCCCTA
CTTTTTCAACCAGCTGGTGACGCGCGAGCTCCTCTTCCTGTGCATGACTG
ATCAGTTCTCTTCGGAGGCAGAGGTCTTTGAGTACCTCGAAATCGTCAAG
GACGCTGTCTTGGCAGCGTTCGAGCGAATGGCTGGCGCGACAGTGGCTGA
TAAGCGGCGTGCGGCGTCTCTGGCTCTGGTAGAGAGTTTGAGCCGATTCA
CACCGTCGGCGCCACCGCCGCCGCCGGCCCCGCCATACTTGCCGGGCGCC
CTGCCACCGTCTTCGCTGGCCGGCAGCCACAGCCTCGGCCCGGCGGCAGC
GGCGCGGCAGCCGCAGCGATACATCGCGCCGTCGGGCCCGCCGTACGCCG
CGACGCCGGCCGTCACAGCGGCA
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