mRNA_P-wetherbeei_contig14264.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14264.2.1
Unique NamemRNA_P-wetherbeei_contig14264.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: D7FWM4_ECTSI (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM4_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.600e-39
Identity = 71/88 (80.68%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            VHSGGERSVSTILFLMALQD+   SPFRVVDEINQGMDP NER VFSRIV NSCGP R QYFLITPKLLQGL AM+++D+TV+ I NG
Sbjct:  220 VHSGGERSVSTILFLMALQDLQH-SPFRVVDEINQGMDPKNERQVFSRIVLNSCGPSRKQYFLITPKLLQGLVAMDNDDITVIVIMNG 306
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A6H5JJB3_9PHAE (Structural maintenance of chromosomes protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB3_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 4.400e-37
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            VHSGGERSVSTILFLMALQD+   SPFRVVDEINQGMDP NER VFSRIV NSCGP R QYFLITPKLLQGL AM+++D+T++ I NG
Sbjct: 1003 VHSGGERSVSTILFLMALQDLQH-SPFRVVDEINQGMDPKNERQVFSRIVLNSCGPSRKQYFLITPKLLQGLVAMDNDDITIIVIMNG 1089
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S2SUQ7_9STRA (Structural maintenance of chromosomes protein 5 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUQ7_9STRA)

HSP 1 Score: 137 bits (344), Expect = 8.600e-37
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1 
Query:    7 SGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            SGGERSVSTI++LMALQD+ + SPFRVVDEINQGMD  NER+VF RIV NS GP  PQYFLITPKLLQGLTAMEH+DVTVL +FNG
Sbjct:  300 SGGERSVSTIMYLMALQDMVR-SPFRVVDEINQGMDERNERIVFRRIVENSTGPESPQYFLITPKLLQGLTAMEHDDVTVLVVFNG 384
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S3UTJ1_HETAK (Structural maintenance of chromosomes protein 5 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTJ1_HETAK)

HSP 1 Score: 128 bits (322), Expect = 2.620e-33
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            V+SGGERSV+T+++LMALQD+  +SPFRVVDEINQGMD  NER+VFSRIVRN CG  RPQYFLITPKLLQGL AM+H DV    I NG
Sbjct:  353 VNSGGERSVATVIYLMALQDMI-SSPFRVVDEINQGMDERNERMVFSRIVRNCCGDRRPQYFLITPKLLQGLVAMDHPDVRAHVICNG 439
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A835YKC8_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.720e-33
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            +HSGGERSVSTIL+LMA+QD+ ++SPFRVVDE+NQGMD +NERLVFSRIVRNSC     Q+FLITPKLLQGL AM++  VTV  I NG
Sbjct:  141 IHSGGERSVSTILYLMAMQDL-QSSPFRVVDEVNQGMDAHNERLVFSRIVRNSCRTDCKQFFLITPKLLQGLIAMDNPFVTVHFILNG 227
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S2CV35_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CV35_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.780e-33
Identity = 69/91 (75.82%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    4 HSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSC----GPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            HSGGERSV+TI+FLMALQD +  SPFRVVDEINQGMD  NER VF RIV NS     GP RPQYFLITPKLLQGLTAME EDVTV  + NG
Sbjct:  182 HSGGERSVATIMFLMALQD-SVISPFRVVDEINQGMDEPNERQVFKRIVENSIDKPNGPLRPQYFLITPKLLQGLTAMEKEDVTVHFVMNG 271
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S3UTK1_HETAK (Structural maintenance of chromosomes protein 5 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTK1_HETAK)

HSP 1 Score: 128 bits (322), Expect = 1.200e-32
Identity = 65/88 (73.86%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            V+SGGERSV+T+++LMALQD+  +SPFRVVDEINQGMD  NER+VFSRIVRN CG  RPQYFLITPKLLQGL AM+H DV    I NG
Sbjct:  664 VNSGGERSVATVIYLMALQDMI-SSPFRVVDEINQGMDERNERMVFSRIVRNCCGDRRPQYFLITPKLLQGLVAMDHPDVRAHVICNG 750
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S2S1A1_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S1A1_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.170e-32
Identity = 66/93 (70.97%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRP-----QYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            VHSGGERSVSTI++LMALQDI   SPFR VDEINQG+D  NER VF RIV NS    +      QYFLITPKLL  LT MEHEDVTVL IFNG
Sbjct:   72 VHSGGERSVSTIMYLMALQDI-MVSPFRCVDEINQGLDERNERFVFKRIVLNSTSQNKSGDHSGQYFLITPKLLPNLTDMEHEDVTVLCIFNG 163
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A7S0SSJ2_9STRA (Structural maintenance of chromosomes protein 5 (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSJ2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.210e-32
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    4 HSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSC--GPG--RPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            HSGGER+VSTI++LMALQD+   SPFRVVDEINQGMD  NERLV  RIV+N C   P    PQYFL+TPKLL GL ++E+++VTVL IFNG
Sbjct:   28 HSGGERAVSTIMYLMALQDMT-ASPFRVVDEINQGMDERNERLVLDRIVQNCCTISPSGYNPQYFLVTPKLLPGLRSLENDNVTVLVIFNG 117
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BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Match: A0A8J2SM90_9STRA (Structural maintenance of chromosomes protein 5 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SM90_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.500e-31
Identity = 65/88 (73.86%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIVRNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG 264
            V SGGERSVSTI+FLMALQ  +  SPFRVVDEINQGMD  NER+VF R+V NS GPG PQY+LITPKLLQGL  MEH DV VL ++NG
Sbjct:  964 VQSGGERSVSTIMFLMALQ-AHLPSPFRVVDEINQGMDEVNERIVFRRVVLNSTGPGAPQYWLITPKLLQGLYDMEHPDVRVLVVYNG 1050
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14264.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM4_ECTSI3.600e-3980.68Structural maintenance of chromosomes protein 5 n=... [more]
A0A6H5JJB3_9PHAE4.400e-3779.55Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S2SUQ7_9STRA8.600e-3780.23Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S3UTJ1_HETAK2.620e-3373.86Structural maintenance of chromosomes protein 5 n=... [more]
A0A835YKC8_9STRA3.720e-3372.73Structural maintenance of chromosomes protein 5 (F... [more]
A0A7S2CV35_9STRA3.780e-3375.82Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S3UTK1_HETAK1.200e-3273.86Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S2S1A1_9STRA3.170e-3270.97Structural maintenance of chromosomes protein 5 n=... [more]
A0A7S0SSJ2_9STRA8.210e-3268.13Structural maintenance of chromosomes protein 5 (F... [more]
A0A8J2SM90_9STRA1.500e-3173.86Structural maintenance of chromosomes protein 5 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14264contigP-wetherbeei_contig14264:762..1399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWM4
Preferred nameSMC5
PFAMsAAA_23,SMC_N
Model size264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000228,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000729,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007063,GO:0007088,GO:0007127,GO:0007131,GO:0007346,GO:0007568,GO:0007569,GO:0008144,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0010564,GO:0010638,GO:0010705,GO:0012505,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022414,GO:0030054,GO:0030176,GO:0030554,GO:0030915,GO:0031000,GO:0031224,GO:0031227,GO:0031974,GO:0031981,GO:0031984,GO:0032200,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034091,GO:0034093,GO:0034182,GO:0034184,GO:0034641,GO:0035061,GO:0035639,GO:0035825,GO:0035861,GO:0036094,GO:0036270,GO:0042175,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045840,GO:0045876,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051276,GO:0051304,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060249,GO:0061982,GO:0062033,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0072546,GO:0090068,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097367,GO:0098687,GO:0098796,GO:0098827,GO:0106068,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1903046,GO:1990234,GO:2001252
Exons2
Evalue5.91e-40
EggNOG OGsCOG1196@1|root,KOG0979@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size264
COG categoryD
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.426992-CDS-P-wetherbeei_contig14264:761..8661683186015.426992-CDS-P-wetherbeei_contig14264:761..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14264 762..866 +
1683186015.4372313-CDS-P-wetherbeei_contig14264:1240..13991683186015.4372313-CDS-P-wetherbeei_contig14264:1240..1399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14264 1241..1399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14264.2.1prot_P-wetherbeei_contig14264.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14264 762..1399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14264.2.1

>prot_P-wetherbeei_contig14264.2.1 ID=prot_P-wetherbeei_contig14264.2.1|Name=mRNA_P-wetherbeei_contig14264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
VHSGGERSVSTILFLMALQDINKTSPFRVVDEINQGMDPNNERLVFSRIV
RNSCGPGRPQYFLITPKLLQGLTAMEHEDVTVLTIFNG
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mRNA from alignment at P-wetherbeei_contig14264:762..1399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14264.2.1 ID=mRNA_P-wetherbeei_contig14264.2.1|Name=mRNA_P-wetherbeei_contig14264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=638bp|location=Sequence derived from alignment at P-wetherbeei_contig14264:762..1399+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCATTCCGGCGGGGAGCGGAGCGTGTCAACGATCCTGTTCCTGATGGC
GCTGCAGGACATCAACAAGACCTCGCCCTTCCGGGTCGTCGACGAGATCA
ACCAGGTGTGGTTATTTATAGAGCTATCAGCCCGTTCCGGTCCCGGCCCA
GCTCCGTCGTTCTGCGGGCTTTTCTGCTCTCCGCAGCTCTCATGGTAACT
TAGGTGCCGTTTGCCCCTGCTGAGATGCCCTAGCTGCCGTTGCAGGTGCT
CTGCTTTCCTTCTTTTCCCTCCTATTCCGGTTTCTGCTTCTCGCTGCCGC
CCATTGCCGTGCACCACGTCACCGCGGCGCCGCCATCGCCACCACCGCTA
ACCATTCGCCTCCGACTTGCCATCAATGCCGCCATCGCACGGCCGCCGAC
CTCCCTCCTGTCCTCGGCCTTCTGCCGGGTGAAACGGCAAACCAACCCGA
AACCCAAACCAACCCGAAATGAAACACAGGGCATGGACCCCAACAACGAG
CGGCTGGTGTTCTCGCGCATCGTGCGCAACAGCTGCGGACCGGGTCGGCC
GCAGTACTTTCTCATCACGCCTAAACTGCTGCAGGGACTGACGGCGATGG
AGCACGAGGACGTGACCGTGCTGACCATCTTCAACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14264:762..1399+

>mRNA_P-wetherbeei_contig14264.2.1 ID=mRNA_P-wetherbeei_contig14264.2.1|Name=mRNA_P-wetherbeei_contig14264.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig14264:762..1399+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCATTCCGGCGGGGAGCGGAGCGTGTCAACGATCCTGTTCCTGATGGC
GCTGCAGGACATCAACAAGACCTCGCCCTTCCGGGTCGTCGACGAGATCA
ACCAGGGCATGGACCCCAACAACGAGCGGCTGGTGTTCTCGCGCATCGTG
CGCAACAGCTGCGGACCGGGTCGGCCGCAGTACTTTCTCATCACGCCTAA
ACTGCTGCAGGGACTGACGGCGATGGAGCACGAGGACGTGACCGTGCTGA
CCATCTTCAACGGC
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