mRNA_P-wetherbeei_contig14260.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14260.1.1
Unique NamemRNA_P-wetherbeei_contig14260.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14260.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14260contigP-wetherbeei_contig14260:1112..1729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog941639.BCO26_1820
Preferred namelytH
PFAMsAmidase_3,SH3_3
Model size618
Max annot lvl91061|Bacilli
KEGG rclassRC00064,RC00141
KEGG koko:K01448
KEGG ReactionR04112
KEGG Pathwayko01503,map01503
KEGG ModuleM00727
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0044464
Exons1
Evalue2e-05
EggNOG OGsCOG0860@1|root,COG3807@1|root,COG0860@2|Bacteria,COG3807@2|Bacteria,1UYPW@1239|Firmicutes,4HBVT@91061|Bacilli,1ZDI1@1386|Bacillus
EC3.5.1.28
DescriptionCOG3103 SH3 domain protein
Cds size618
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01011,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.3689458-CDS-P-wetherbeei_contig14260:1111..17291683186015.3689458-CDS-P-wetherbeei_contig14260:1111..1729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14260 1112..1729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14260.1.1prot_P-wetherbeei_contig14260.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14260 1112..1729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14260.1.1

>prot_P-wetherbeei_contig14260.1.1 ID=prot_P-wetherbeei_contig14260.1.1|Name=mRNA_P-wetherbeei_contig14260.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=206bp
LFLVGIWLAVPKMASRNVPEAPTAVGKPDAAVSRRTPVPSEPAPLPVQTR
APDFPQRTPTLSTGKDAGWVVSEGAKVHQGPGLDSPTIATLKYGKRVQLV
SSDQGWQKISFDGHQSGWLQVQFVSSHRPEGLPQEGPEDAIKALTAFYQD
IGKKKLGAAYDRLSFEFKRSLSYAQFQAGYGNAEGADVRVTKTDSLGPER
YMLYAE
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mRNA from alignment at P-wetherbeei_contig14260:1112..1729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14260.1.1 ID=mRNA_P-wetherbeei_contig14260.1.1|Name=mRNA_P-wetherbeei_contig14260.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig14260:1112..1729+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTTCTCGTCGGCATCTGGCTGGCTGTGCCCAAAATGGCCTCCAGGAA
TGTCCCTGAAGCGCCTACGGCCGTAGGCAAGCCGGACGCCGCAGTCTCTC
GCCGGACCCCTGTCCCCAGCGAGCCGGCCCCGCTTCCGGTGCAAACCCGC
GCGCCCGATTTTCCCCAGCGCACCCCCACGCTGTCCACGGGTAAAGATGC
CGGCTGGGTCGTCAGTGAGGGGGCCAAGGTCCACCAGGGCCCGGGTCTGG
ACAGCCCCACGATTGCTACGCTGAAATACGGCAAACGGGTTCAGCTTGTC
TCAAGCGACCAGGGCTGGCAAAAAATCAGTTTCGACGGACACCAGAGCGG
CTGGCTGCAGGTCCAGTTCGTTTCTTCGCATCGCCCCGAAGGTTTGCCCC
AGGAAGGTCCTGAGGACGCCATCAAAGCTCTCACCGCTTTCTATCAGGAC
ATCGGCAAAAAGAAACTTGGCGCGGCCTATGACCGCCTCTCCTTCGAGTT
CAAGCGCAGCCTTAGCTACGCGCAGTTCCAGGCCGGCTACGGAAATGCCG
AGGGAGCCGATGTGCGCGTCACCAAGACCGACAGTCTCGGACCTGAGCGC
TACATGCTCTACGCAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14260:1112..1729+

>mRNA_P-wetherbeei_contig14260.1.1 ID=mRNA_P-wetherbeei_contig14260.1.1|Name=mRNA_P-wetherbeei_contig14260.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=618bp|location=Sequence derived from alignment at P-wetherbeei_contig14260:1112..1729+ (Phaeothamnion wetherbeei SAG_119_79)
CTCTTTCTCGTCGGCATCTGGCTGGCTGTGCCCAAAATGGCCTCCAGGAA
TGTCCCTGAAGCGCCTACGGCCGTAGGCAAGCCGGACGCCGCAGTCTCTC
GCCGGACCCCTGTCCCCAGCGAGCCGGCCCCGCTTCCGGTGCAAACCCGC
GCGCCCGATTTTCCCCAGCGCACCCCCACGCTGTCCACGGGTAAAGATGC
CGGCTGGGTCGTCAGTGAGGGGGCCAAGGTCCACCAGGGCCCGGGTCTGG
ACAGCCCCACGATTGCTACGCTGAAATACGGCAAACGGGTTCAGCTTGTC
TCAAGCGACCAGGGCTGGCAAAAAATCAGTTTCGACGGACACCAGAGCGG
CTGGCTGCAGGTCCAGTTCGTTTCTTCGCATCGCCCCGAAGGTTTGCCCC
AGGAAGGTCCTGAGGACGCCATCAAAGCTCTCACCGCTTTCTATCAGGAC
ATCGGCAAAAAGAAACTTGGCGCGGCCTATGACCGCCTCTCCTTCGAGTT
CAAGCGCAGCCTTAGCTACGCGCAGTTCCAGGCCGGCTACGGAAATGCCG
AGGGAGCCGATGTGCGCGTCACCAAGACCGACAGTCTCGGACCTGAGCGC
TACATGCTCTACGCAGAG
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