mRNA_P-wetherbeei_contig14255.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14255.1.1
Unique NamemRNA_P-wetherbeei_contig14255.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.760e-65
Identity = 122/280 (43.57%), Postives = 156/280 (55.71%), Query Frame = 1
Query:    1 LSLEAALEAGVNRALRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFFQEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWTAPLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEATALAGGPYLNGTTRTKEVRRRANRITWLMQV 840
            L+L+ ALE GVNRA+RGD  VLRQVLA    W GP+G+  G+A +E ELR LG     PR ++                S DG+  L+WIAS TWPLPWLPR IV+G S ++T               G    V  I+D W      L L  LVPGFWD+WHQL S   E+ P+ VV +  GY +R   PRL  + SL+D SNSR  R A +LP F    +++TSGR P+ Y  TGP+EV++ P +        G + NGT R     RRANRITW + +
Sbjct:  160 LTLDKALEEGVNRAMRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLSAPRMSVFA--------------SKDGAKRLEWIASGTWPLPWLPRFIVKGASKLQT---------------GPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGN-FPNGTWFNGTRREASQSRRANRITWTVPI 409          
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.790e-64
Identity = 116/281 (41.28%), Postives = 167/281 (59.43%), Query Frame = 1
Query:    1 LSLEAALEAGVNRALRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFFQEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWT-APLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEATALAGGPYLNGTTRTKEVRRRANRITWLMQV 840
            L L  AL  G+NRA+RGD +VLRQVL+ + +W GP+ S+     IE +LR++G F  +PRFT+                + D +  L+W+ASATWPLPW PR++++G + V+  +A                 + S+ D W  AP+QAL +  L+PGFWD+W+Q CS + E+YPH V+ + +GYEV +  PRL +  +LVDR+NSR+ R+A +LPDF F++ + T GR PE Y  T P+E  + PL+E  T        N       V+ RANRITW +QV
Sbjct:   24 LELGPALTLGLNRAIRGDSSVLRQVLSDNCSWKGPVASYDSRNKIEEDLRNVGSFLSDPRFTVASTTP-----------TGDATYSLEWLASATWPLPWTPRIVIQGRTLVRLDSAGGR--------------IISMEDTWEEAPVQAL-IRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLVLRPTLVDRTNSRQARMAYVLPDFSFTSSVNTRGRVPEKYFTTSPIEAEITPLIETNTVS------NENGSLGSVQTRANRITWAVQV 272          
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 4.620e-61
Identity = 112/266 (42.11%), Postives = 145/266 (54.51%), Query Frame = 1
Query:   43 LRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFFQEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWTAPLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEATALAGGPYLNGTTRTKEVRRRANRITWLMQV 840
            +RGD  VLRQVLA    W GP+G+  G+A +E ELR LG     PR ++                S DG+  L+W+AS TWPLPWLPR IV+G S ++T               G    V  I+D W      L L  LVPGFWD+WHQL S   E+ P+ VV +  GY +R   PR+  + SL+D SNSR  R A +LP F    +++TSGR P+ Y  TGP+EV++ P +        G + NGTTR     RRANRITW + V
Sbjct:    1 MRGDPGVLRQVLAPGVEWRGPLGNNAGLAKVEEELRGLGSLLNAPRLSVFA--------------SKDGAKRLEWVASGTWPLPWLPRFIVKGASTLQT---------------GPDGKVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQPSLIDYSNSREIRKALILPGFCHDGEIKTSGRKPDEYYVTGPLEVAIQPFIATGN-FPNGTWFNGTTREASQSRRANRITWTVPV 236          
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: A0A6V1P7S5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7S5_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.480e-28
Identity = 78/234 (33.33%), Postives = 112/234 (47.86%), Query Frame = 1
Query:   22 EAGVNRALRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFFQEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWTAPLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVS 723
            E  +N+AL+ +   LR+     ATW  P+ + +  A +E  L  +G F ++PR T+       A  + GGDG      E+ W+ +ATWPLPW P + V G + ++        AAA               D W      +AL Q  P FWD +H       E   + V A+ +GYEVR   PRL V    +DR N+R  R A  LP+ +FS  +   G+ PE +  T P+EVS
Sbjct:   71 ENAINQALKTNLDPLRKFAVSGATWDNPVEAQKDRAGMEKLLLDVGNFLEDPRLTV------HAARARGGDGGGGALVEVDWLKTATWPLPWRPPVQVFGRTVLRLDGEGRLAAAA---------------DTWEQSPYQVALGQCRPRFWDFYHFKAFPPAEFPAYRVAARGEGYEVRDYAPRLVVVGRTLDRVNTRETRAARTLPESMFSCTISMIGKIPERFYVTSPIEVS 283          
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: A0A8J5XYQ7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XYQ7_DIALT)

HSP 1 Score: 77.0 bits (188), Expect = 2.360e-12
Identity = 79/267 (29.59%), Postives = 120/267 (44.94%), Query Frame = 1
Query:    1 LSLEAALEAGVNR-----ALRGDG-AVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFFQEPRFTILPPDKEKAGESGGGDGSVDG--STELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWTAPLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRL---CVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEATALAGGP 768
            LSL+AA+   ++      A R +G A L    + D   SG + S       +  +   G+F  +P   +L               SV G  S  ++W+AS TWPLPW PR +  G+SA++    P          TGAV VV       T+P+  L   QL+P + D++    S   E  P+ VV   + YE+R  PP +   C   S    S++  K +A LLP F F+     + R+  ++SA  P+ V      +++   AGGP
Sbjct:   48 LSLDAAVRTAMSSLAAAFAQREEGEAELGAEFSADVRVSGLLWSASSRREWQRAVSDSGKFLVDPMLEVLSV-------------SVTGASSARVEWLASGTWPLPWRPRALALGSSALELETLP----------TGAVHVVRVTDTLQTSPVDVLVS-QLLPNWEDVYSLYNSPPAELRPYRVVRAARTYELRWMPPGIALRCALRSATYPSSATHKLVAPLLPGFAFTGK-PLNNRA--VWSAVRPITVEY----DQSDRKAGGP 283          
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Match: A0A7S0EVB8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EVB8_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.020e-8
Identity = 71/264 (26.89%), Postives = 106/264 (40.15%), Query Frame = 1
Query:   25 AGVNRALRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELRSLGQFF-------------QEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWLPRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAW-TAPLQALALWQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVDRSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEA---TALAGG 765
            A + +A + D   LR++L  DA    PI S    A    +L     FF                + T+L  ++  +GE           T ++W+    WP  W  R+ + G S V+  +A                 V  +++ W  +P QA A  Q++P   DL     S   E  P  V    +GYEVRR PP L V+A  V+   +  +  A L P F F+ +++ +    E YS   P       LLE A    +L GG
Sbjct:   29 AALAQAWQQDPKALRELLGRDAVVDTPIWSCADAADYLEKLGEAAVFFGGSDGEMGRAGETAPAQLTVLSEEQLPSGE-----------TRVEWVLGVEWPSLWRARVNLLGESLVRFDSAGER--------------VREVTETWHQSPQQAFAE-QVLPRRRDLMSLYNSPTAEHVPQKVERVGRGYEVRRLPPMLAVQAETVETGETLYEEQAPLAPAFAFTGEVKRT----EWYSTVSPA------LLERAFTTISLPGG 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14255.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L2A9_9PHAE6.760e-6543.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSS2_9STRA2.790e-6441.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FR29_ECTSI4.620e-6142.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1P7S5_HETAK1.480e-2833.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J5XYQ7_DIALT2.360e-1229.59Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0EVB8_9EUKA1.020e-826.89Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14255contigP-wetherbeei_contig14255:62..1579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR29
Model size840
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.58e-62
EggNOG OGs2C5V8@1|root,2SB4P@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003730.1
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186015.2002864-CDS-P-wetherbeei_contig14255:61..6131683186015.2002864-CDS-P-wetherbeei_contig14255:61..613Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14255 62..613 +
1683186015.2128-CDS-P-wetherbeei_contig14255:972..11371683186015.2128-CDS-P-wetherbeei_contig14255:972..1137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14255 973..1137 +
1683186015.22987-CDS-P-wetherbeei_contig14255:1456..15791683186015.22987-CDS-P-wetherbeei_contig14255:1456..1579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14255 1457..1579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14255.1.1prot_P-wetherbeei_contig14255.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14255 62..1579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14255.1.1

>prot_P-wetherbeei_contig14255.1.1 ID=prot_P-wetherbeei_contig14255.1.1|Name=mRNA_P-wetherbeei_contig14255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp
LSLEAALEAGVNRALRGDGAVLRQVLAHDATWSGPIGSFRGVAAIETELR
SLGQFFQEPRFTILPPDKEKAGESGGGDGSVDGSTELQWIASATWPLPWL
PRLIVRGNSAVKTAAAPSSGAAAPAPATGAVSVVWSISDAWTAPLQALAL
WQLVPGFWDLWHQLCSRLVEQYPHAVVAKRKGYEVRRCPPRLCVEASLVD
RSNSRRKRLACLLPDFVFSADLRTSGRSPELYSATGPVEVSVAPLLEEAT
ALAGGPYLNGTTRTKEVRRRANRITWLMQV
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mRNA from alignment at P-wetherbeei_contig14255:62..1579+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14255.1.1 ID=mRNA_P-wetherbeei_contig14255.1.1|Name=mRNA_P-wetherbeei_contig14255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1518bp|location=Sequence derived from alignment at P-wetherbeei_contig14255:62..1579+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCTCTAGAGGCGGCGCTTGAAGCCGGAGTCAATCGGGCCCTCCGAGG CGATGGCGCGGTGCTACGGCAAGTGCTGGCACACGACGCGACGTGGTCGG GCCCTATCGGCTCCTTCCGCGGCGTCGCGGCCATCGAGACCGAGCTGCGT AGCCTCGGCCAGTTCTTTCAGGAGCCTCGCTTCACCATTCTTCCGCCGGA CAAGGAGAAAGCTGGCGAAAGTGGCGGTGGCGATGGCAGCGTCGACGGGA GCACGGAGCTGCAGTGGATCGCCAGCGCCACCTGGCCGCTGCCCTGGCTC CCGCGCCTCATTGTGCGCGGCAACAGCGCCGTGAAGACCGCGGCAGCGCC GTCGTCCGGTGCGGCGGCGCCGGCGCCAGCAACGGGTGCTGTTTCGGTGG TCTGGTCAATATCCGACGCGTGGACGGCGCCGCTGCAGGCGCTGGCGCTA TGGCAGCTGGTGCCGGGGTTCTGGGACTTGTGGCACCAGTTGTGCTCGCG GTTGGTGGAGCAATACCCGCACGCTGTCGTCGCCAAGCGGAAGGGCTACG AGGTGAGAGTGATGTGGTTTAAAGGGGACAGATAGGCTTTCCGGCCCTTA CTTCTGTTATTAAGAGGTCCGCTTACAATGGCCTTTAGTTCTACAGTGCT ATTCCTGAAGTGAGACCGCATAGCCTCAGGTCGTTCACAGGTGTGCTGCG GTTGATGAGAAACAGAACAGAAGGGCAGCAGTAAGGAAGAATTTGCCGGG GGCCTTGTAAAAGAAGTGGTACAGGCGTTTCTCCTTCATGAAGATCGTGC ATTCGCCCTGTGGCGCCCGCCTGCCTCCACCACTACTACCGCTGCCGCCG CCCGCTGCTGCCCGCCCCTCTCTCCCGCAACAATCAAAACCAAAAACCAA CTTTTCAAAAGGTGCGGCGGTGCCCACCGCGGCTGTGCGTGGAGGCGTCG CTTGTCGACCGCTCCAACTCGCGCCGCAAGCGGCTGGCGTGCCTCCTGCC AGACTTCGTCTTCTCGGCGGACCTCCGGACATCCGGCAGGAGTCCGGAGC TCTACAGCGCCACCGGCCCCGTCGAGGTGAGGGAAAGGGGAGCCTCTGTT ACAAGGGAAGCTGGTTTTTTGGTTGCAGTTTGAAAGATTTGTTCGTTCTA GCTTCTGCGTGCGTGGTTTCGATCCTCTTCCGCCAAACCCTTGCTAGAAA GGTGCTGCTTTGGTGCGTTGGATGGCCCGCCATTGCACGCCAGAGCACAG AGGGTCTTATAACAGCATGTTACCTGCTCCCTCCATCGCAGGATTTTGAG TGCTTACTCCTGTTTACAGTCAATTAACTCAAACGAACTCAATGCCTGAA ACCGGCACCAGCACCTACCCCGCTCCCACGCCTGCCTCATTGCAGGTGTC GGTGGCGCCGCTGCTGGAGGAGGCGACGGCGCTTGCGGGCGGGCCGTACC TCAATGGGACGACACGTACAAAGGAGGTCCGGCGGCGTGCCAACCGCATC ACCTGGCTTATGCAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14255:62..1579+

>mRNA_P-wetherbeei_contig14255.1.1 ID=mRNA_P-wetherbeei_contig14255.1.1|Name=mRNA_P-wetherbeei_contig14255.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig14255:62..1579+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCTCTAGAGGCGGCGCTTGAAGCCGGAGTCAATCGGGCCCTCCGAGG
CGATGGCGCGGTGCTACGGCAAGTGCTGGCACACGACGCGACGTGGTCGG
GCCCTATCGGCTCCTTCCGCGGCGTCGCGGCCATCGAGACCGAGCTGCGT
AGCCTCGGCCAGTTCTTTCAGGAGCCTCGCTTCACCATTCTTCCGCCGGA
CAAGGAGAAAGCTGGCGAAAGTGGCGGTGGCGATGGCAGCGTCGACGGGA
GCACGGAGCTGCAGTGGATCGCCAGCGCCACCTGGCCGCTGCCCTGGCTC
CCGCGCCTCATTGTGCGCGGCAACAGCGCCGTGAAGACCGCGGCAGCGCC
GTCGTCCGGTGCGGCGGCGCCGGCGCCAGCAACGGGTGCTGTTTCGGTGG
TCTGGTCAATATCCGACGCGTGGACGGCGCCGCTGCAGGCGCTGGCGCTA
TGGCAGCTGGTGCCGGGGTTCTGGGACTTGTGGCACCAGTTGTGCTCGCG
GTTGGTGGAGCAATACCCGCACGCTGTCGTCGCCAAGCGGAAGGGCTACG
AGGTGCGGCGGTGCCCACCGCGGCTGTGCGTGGAGGCGTCGCTTGTCGAC
CGCTCCAACTCGCGCCGCAAGCGGCTGGCGTGCCTCCTGCCAGACTTCGT
CTTCTCGGCGGACCTCCGGACATCCGGCAGGAGTCCGGAGCTCTACAGCG
CCACCGGCCCCGTCGAGGTGTCGGTGGCGCCGCTGCTGGAGGAGGCGACG
GCGCTTGCGGGCGGGCCGTACCTCAATGGGACGACACGTACAAAGGAGGT
CCGGCGGCGTGCCAACCGCATCACCTGGCTTATGCAGGTA
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