mRNA_P-wetherbeei_contig14241.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14241.1.1
Unique NamemRNA_P-wetherbeei_contig14241.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA)

HSP 1 Score: 138 bits (348), Expect = 8.180e-32
Identity = 127/454 (27.97%), Postives = 191/454 (42.07%), Query Frame = 1
Query:    1 RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRPQDTTTLGFNVTWAAAAANASLALRRLSGHAAVNADTGDPHLSAEPATDHALLAAGITDAVRYTLRVGGGGALLPGSLYSFAVALIYGDVAGPPSAFSKAVRTAAVTAPXXXXXXXXXXXXXXXT-----AGRPLSVRLAVPLPADDGGAPLEGIHVMLRSVGEHVPQGWHVIGVYPGGGTVGGGDXXXXXTIGTIGIGRSKLSIDVANLLPGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGASPHLGELAGFHSGGGGGPHVVPLPNVSDPRVYYAVAGSALPGRGFDPFER----EVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPF-----------DAAVPLRNAALLRGRVAIVGR 1302
            R++ KDWQ E+RW  +V+GLTLPTL  PT++  GR + T+ W+  F  +  D+T  G+N+TW    +      R ++G   V+ +  +   + +    H L  + + +             L P   Y+F + + YG+ + P SA S+ V T A++AP                      G  LS+ +A P P DDGGA ++G  V  R V E +   W  +G +P               +   G    +L+ ++ +LLP   Y+F+    N+IG +     S   T P              AG    GG G   +PL +  +    +    +A               EVHGPVVT+ D   TVT   LE                   G    LPVW  HWSP+A+ VTAE +  DP                PL NAA ++ R+A++ R
Sbjct:  207 RRSQKDWQAETRWKWRVIGLTLPTLSPPTILDVGRRNVTLGWLSGFLVKAGDSTAYGYNITWHRGHS------REVAGWKQVSHEQVEVQHAYDDYHVHDLTYSLVDE-------------LEPDVSYTFRIMVYYGETSSPSSASSRIVHTPALSAPSRMESPPVLWRRPSKQDKGKLTGTKLSI-VASP-PVDDGGADVKGFIVQRRHVQEEMHDDWVTLGSFP--------IHWVDHVVSDDGATEHRLAFELDHLLPNCDYEFRIAAYNKIGVAAPGTGSRLRTNPV-----------SRAGEEVVGGSGHRSMPLHHFRELDEDFHTDSAAEVREHLKALHSSTFFEVHGPVVTLSDLLQTVT---LE-----------------KPGTGLTLPVWVSHWSPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMER 600          
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK)

HSP 1 Score: 90.9 bits (224), Expect = 1.010e-16
Identity = 79/252 (31.35%), Postives = 98/252 (38.89%), Query Frame = 1
Query:  562 PADDGGAPLEGIHVMLRSVGEHVPQGWHVIGVYPGGGTVGGGDXXXXXTIGTIGIGRSKLSIDVANLLPGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGASPHLGELAGFHSGGGGGPHVV-----PLPNVSDPRVYYAVAGSALPGRGFDPFEREVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
            P DDGG P+ G H+M     EH    W  +G +                          L   V +LLPG  Y FK   +   G   WSAPS P   P P          +  G  +GG G  HV      P+ + S  +  +                 + HGPVVT+ D         LE                  GG    +  W   WSP+AF VTAEAV ADPF A  PLRN A+LR R+A+VGR
Sbjct:   11 PEDDGGEPITGYHLMKLHTDEHTHDDWEFLGTF----------------FPNFDPNMGGLCHTVPHLLPGTAYSFKVAARTAAGDGLWSAPSPPARTPLPQ------LEVDPKGKVTGGTG--HVYGRGWDPITHTSFKKDMFEAPLHLETHSSDKKTSYDQHGPVVTLHDHEAR-----LEVRR-------------GGGGPAVAVAAWTCAWSPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGR 220          
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A5D6YD54_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD54_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.160e-16
Identity = 139/496 (28.02%), Postives = 183/496 (36.90%), Query Frame = 1
Query:    1 RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRPQDTTTLGFNVTWAAAAANASLALRRLSGHAAVNADTGDPHLSAEPAT--------DHALLAAGIT-------DAVRYTLRVGGGGALLPGSLYSFAVALIYGDVAGPPSAFSKAVRTAAVTAPXXXXXXXXXXXXXXXTAGRPLSVRLAVPLPADDGGAPLEGIHVMLRSV-GEHVPQGWHVIGVYPGGGT----VGGGDXXXXXT-----------IGTIGIGRSKLSIDVANLL-PGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGA------------SPHLGELAGFHSGGGGGPHVVPLPNVSDPRVYYAVA--GS----ALPGRGFDPFEREVHGPVVTVDD---RAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLP---------VWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
            R+  K WQ++ RW+  V  LTLP    P VV   R + T+R+   +     D T  G+ V W        LA  R       +   GD      P +         H + +A  T       D     + V G   L   + Y+F+V +   D +G  S  S+ V+TA  + P                +G   ++R   P  ADDGG P+    V  R V G+    G    G      T    + G       T                 G    S  V  LL PG TY F+    N IG  PWS+PS+PV LP  A   A            S  +G        G G PH VP+   S   +   VA  GS    A      DP      GP V + D   R     A   +     +T                  P         VWA H+SPRAF V+AE V A+P DA+ PLRNAA ++ RV +V R
Sbjct:  475 RERLKQWQDDKRWDRHVEALTLPVSLPPVVVNTTRTTATLRFQDLYEPLKHDITAYGYVVRWRNIDDELVLAAARSDRVRDTSEPRGDAESEPPPLSVNEMNVTRRHLMRSALPTTLFGDDFDGKDIEVVVRG---LSAETRYAFSVQIYVDDTSGLESDSSRIVQTAPCSEPGGVRGVPTASELD---SGACATLRWLGP--ADDGGKPVRLFLVSARIVNGDRESSGTAADGAGAAVATAVAALAGSHNATRATEDEKVFALDARFAARHAGGKWRSAAVCTLLVPGSTYLFRVAAMNSIGAGPWSSPSDPVELPPSASHHAQIGVAATSRRSLSASVGSTVVPTLKGRGDPHYVPMRAFSMRELADLVAAHGSEAVIATVAETEDPQRPGGVGPAVLLSDVIERIVVSVASKFKIRSEGETQPELTPDAAASSTTANANPEQQQQLAFDVWASHFSPRAFHVSAEMVRAEPLDASTPLRNAAQVKDRVVLVAR 962          
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.370e-15
Identity = 55/138 (39.86%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  895 LAGFHSGGGGGPHVVPLPNVSDPRVYYAVAGSALPGRGFDPFEREVHGPVVTVDDRAGT--VTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR 1302
            ++GFH+G       + LPNV+D  V YA      PG GFDPFEREVHGP V +DDRA    V + +  FE+ D                     VW  H+SPR+F V +E V A P DA   L N   +R R+ +V R
Sbjct:    1 MSGFHAGH----EHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFEDID---------------------VWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQR 113          
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 7.550e-11
Identity = 54/123 (43.90%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  940 PLPNVSDPRVYYAVAGSALPGRGFDPF-EREVHGPVVTVDDRAGTVTAPDLEFEEYDDTSXXXXXXXXXXGGFKKYLPVWAGHWSPRAFLVTAEAVEADPFDAAVP-LRNAALLRGRVAIVGR 1302
            PLP   DP V YA  G A P  G     ER   GP VT+D     V   D                    GG    +PVWAGH+SPR  LVTAE + ADP DAA P LRNA+ +RGR+A+V R
Sbjct:   12 PLPTPRDPAVRYADFGGA-PIVGLHAHAERMARGPTVTLDAARERVHVAD-----------DRGPLAIALGGAD--VPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTR 120          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14241.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2WLH8_9STRA8.180e-3227.97Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UWA2_HETAK1.010e-1631.35Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A5D6YD54_9STRA2.160e-1628.02Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D8LI37_ECTSI1.370e-1539.86PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A836CBI4_9STRA7.550e-1143.90PA domain-containing protein (Fragment) n=1 Tax=Tr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14241contigP-wetherbeei_contig14241:42..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra84349
Model size1302
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.63e-15
EggNOG OGs29K29@1|root,2RTB6@2759|Eukaryota,3QBDI@4776|Peronosporales
DescriptionFibronectin type 3 domain
Cds size1302
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186014.6047673-CDS-P-wetherbeei_contig14241:41..12951683186014.6047673-CDS-P-wetherbeei_contig14241:41..1295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14241 42..1295 -
1683186014.6132076-CDS-P-wetherbeei_contig14241:1538..15861683186014.6132076-CDS-P-wetherbeei_contig14241:1538..1586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14241 1539..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14241.1.1prot_P-wetherbeei_contig14241.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14241 42..1586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14241.1.1

>prot_P-wetherbeei_contig14241.1.1 ID=prot_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=434bp
RKNFKDWQEESRWNLKVLGLTLPTLEAPTVVGCGRDSCTVRWVCSFAKRP
QDTTTLGFNVTWAAAAANASLALRRLSGHAAVNADTGDPHLSAEPATDHA
LLAAGITDAVRYTLRVGGGGALLPGSLYSFAVALIYGDVAGPPSAFSKAV
RTAAVTAPRAPPRAPEADASAAATAGRPLSVRLAVPLPADDGGAPLEGIH
VMLRSVGEHVPQGWHVIGVYPGGGTVGGGDGGGGGTIGTIGIGRSKLSID
VANLLPGVTYQFKFCLQNRIGTSPWSAPSEPVTLPAPAPGGASPHLGELA
GFHSGGGGGPHVVPLPNVSDPRVYYAVAGSALPGRGFDPFEREVHGPVVT
VDDRAGTVTAPDLEFEEYDDTSDSSGSGSSGGGGFKKYLPVWAGHWSPRA
FLVTAEAVEADPFDAAVPLRNAALLRGRVAIVGR
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mRNA from alignment at P-wetherbeei_contig14241:42..1586-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14241.1.1 ID=mRNA_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1545bp|location=Sequence derived from alignment at P-wetherbeei_contig14241:42..1586- (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGAACTTCAAGGACTGGCAGGAGGAGTCCCGCTGGAATCTCAAGGT ACGGCCTGCTGGTAACTACTACCACCAGAACGCGAGGCTAGCTGCGACGA CTCCTCTTCGCGTCCTTTTTTTCAGCCCCCCAACCTAACTCCGTCCTATA TCGTCCTTAATACAGCTGTCCTTCGAAAAGCTGTCCTTAGAAAAGAAAAC TGTCAACTTGGGTGTCTGCACAGTTTTCTTGACTCTTTCGCTCACGCGAA CAGTTTATTTGCTCTGCTTTTGCCTATGTTCCGCGGTGCAGGTGCTCGGC CTGACGCTGCCGACACTGGAAGCGCCTACCGTCGTCGGCTGCGGCCGTGA CAGCTGCACCGTCCGCTGGGTCTGCAGCTTCGCCAAGCGGCCGCAGGACA CCACCACGCTCGGCTTCAATGTGACCTGGGCCGCCGCCGCCGCCAACGCC TCGCTGGCGCTCCGGAGGCTGTCAGGGCACGCCGCCGTCAACGCCGACAC CGGCGACCCGCACCTTTCCGCTGAGCCGGCCACCGACCACGCGCTGCTGG CGGCCGGCATCACCGACGCCGTGCGCTACACCCTCCGCGTCGGCGGCGGC GGCGCGCTGCTTCCCGGTTCGCTCTACTCGTTCGCCGTGGCGCTCATATA TGGCGACGTGGCGGGTCCGCCGTCGGCATTTAGCAAGGCCGTCCGGACGG CGGCGGTGACGGCGCCGCGCGCGCCGCCGCGGGCGCCCGAGGCCGATGCA TCGGCGGCGGCGACGGCTGGCCGCCCCCTCAGCGTGCGGCTGGCCGTGCC ACTGCCGGCAGATGATGGCGGCGCACCGCTAGAAGGGATCCACGTCATGC TGCGGTCGGTCGGAGAGCACGTGCCGCAAGGGTGGCACGTCATCGGCGTC TACCCCGGCGGCGGAACAGTTGGCGGCGGCGACGGCGGCGGTGGTGGAAC TATTGGAACCATTGGCATCGGCCGCAGCAAGCTGTCAATCGACGTGGCGA ATCTGCTGCCAGGAGTGACGTATCAGTTCAAGTTCTGCCTGCAGAACCGC ATAGGCACGTCTCCCTGGAGCGCCCCCAGCGAGCCGGTGACTCTGCCGGC ACCGGCGCCGGGCGGTGCCTCACCACATCTGGGGGAACTGGCAGGCTTTC ACAGCGGTGGCGGCGGTGGCCCCCATGTCGTGCCGCTGCCAAACGTCAGC GACCCGAGAGTCTACTACGCCGTCGCTGGGAGCGCCCTGCCCGGGCGCGG CTTTGATCCCTTCGAGCGGGAGGTGCATGGCCCGGTCGTGACCGTCGATG ACCGTGCGGGCACCGTCACGGCGCCGGACCTCGAATTCGAAGAGTATGAT GACACCAGCGACAGCAGCGGCAGCGGCTCCAGTGGCGGCGGCGGCTTCAA GAAGTATCTCCCCGTGTGGGCCGGCCACTGGAGCCCGCGGGCGTTCCTGG TGACGGCCGAAGCAGTGGAGGCCGACCCGTTCGACGCCGCGGTGCCGCTC CGCAACGCCGCGCTCCTCCGCGGCCGCGTCGCCATCGTCGGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14241:42..1586-

>mRNA_P-wetherbeei_contig14241.1.1 ID=mRNA_P-wetherbeei_contig14241.1.1|Name=mRNA_P-wetherbeei_contig14241.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1302bp|location=Sequence derived from alignment at P-wetherbeei_contig14241:42..1586- (Phaeothamnion wetherbeei SAG_119_79)
CGGAAGAACTTCAAGGACTGGCAGGAGGAGTCCCGCTGGAATCTCAAGGT
GCTCGGCCTGACGCTGCCGACACTGGAAGCGCCTACCGTCGTCGGCTGCG
GCCGTGACAGCTGCACCGTCCGCTGGGTCTGCAGCTTCGCCAAGCGGCCG
CAGGACACCACCACGCTCGGCTTCAATGTGACCTGGGCCGCCGCCGCCGC
CAACGCCTCGCTGGCGCTCCGGAGGCTGTCAGGGCACGCCGCCGTCAACG
CCGACACCGGCGACCCGCACCTTTCCGCTGAGCCGGCCACCGACCACGCG
CTGCTGGCGGCCGGCATCACCGACGCCGTGCGCTACACCCTCCGCGTCGG
CGGCGGCGGCGCGCTGCTTCCCGGTTCGCTCTACTCGTTCGCCGTGGCGC
TCATATATGGCGACGTGGCGGGTCCGCCGTCGGCATTTAGCAAGGCCGTC
CGGACGGCGGCGGTGACGGCGCCGCGCGCGCCGCCGCGGGCGCCCGAGGC
CGATGCATCGGCGGCGGCGACGGCTGGCCGCCCCCTCAGCGTGCGGCTGG
CCGTGCCACTGCCGGCAGATGATGGCGGCGCACCGCTAGAAGGGATCCAC
GTCATGCTGCGGTCGGTCGGAGAGCACGTGCCGCAAGGGTGGCACGTCAT
CGGCGTCTACCCCGGCGGCGGAACAGTTGGCGGCGGCGACGGCGGCGGTG
GTGGAACTATTGGAACCATTGGCATCGGCCGCAGCAAGCTGTCAATCGAC
GTGGCGAATCTGCTGCCAGGAGTGACGTATCAGTTCAAGTTCTGCCTGCA
GAACCGCATAGGCACGTCTCCCTGGAGCGCCCCCAGCGAGCCGGTGACTC
TGCCGGCACCGGCGCCGGGCGGTGCCTCACCACATCTGGGGGAACTGGCA
GGCTTTCACAGCGGTGGCGGCGGTGGCCCCCATGTCGTGCCGCTGCCAAA
CGTCAGCGACCCGAGAGTCTACTACGCCGTCGCTGGGAGCGCCCTGCCCG
GGCGCGGCTTTGATCCCTTCGAGCGGGAGGTGCATGGCCCGGTCGTGACC
GTCGATGACCGTGCGGGCACCGTCACGGCGCCGGACCTCGAATTCGAAGA
GTATGATGACACCAGCGACAGCAGCGGCAGCGGCTCCAGTGGCGGCGGCG
GCTTCAAGAAGTATCTCCCCGTGTGGGCCGGCCACTGGAGCCCGCGGGCG
TTCCTGGTGACGGCCGAAGCAGTGGAGGCCGACCCGTTCGACGCCGCGGT
GCCGCTCCGCAACGCCGCGCTCCTCCGCGGCCGCGTCGCCATCGTCGGCC
GC
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