mRNA_P-wetherbeei_contig14213.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14213.1.1
Unique NamemRNA_P-wetherbeei_contig14213.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A0S8B9Q0_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B9Q0_9PROT)

HSP 1 Score: 201 bits (511), Expect = 5.670e-64
Identity = 106/148 (71.62%), Postives = 119/148 (80.41%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILV TDGS+LS KA++ AA+LA KLGA+LT VYV+P YVPP+YGEAA+Y+PE TPKR+K+  EKEAK ALA     A  AGV C    VTK Q W  II  AR+RKCDL+VMASHGRRGL GLLLGSETTKVLTHSKVPVLVCR
Sbjct:    1 MYKHILVPTDGSRLSAKAVKAAAALAKKLGAKLTGVYVIPPYVPPMYGEAAVYVPEVTPKRYKDLAEKEAKKALAAVEIAAQVAGVPCKTTWVTKDQAWDGIIRTARARKCDLIVMASHGRRGLTGLLLGSETTKVLTHSKVPVLVCR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F4FH88_9PROT (Universal stress protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FH88_9PROT)

HSP 1 Score: 197 bits (502), Expect = 1.330e-62
Identity = 101/148 (68.24%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILV TDGSKLS+KA++TAA+LA  LGA+L  VYV+P YVPP+YGEA +Y+PE TPKR+KE   +EAK ALA    EA AAGV C  + VT  Q W  I+  A S+ CDL+VMASHGRRGL+GLLLGSETTKVLTHSK PVLVCR
Sbjct:    1 MYKHILVPTDGSKLSVKAIKTAAALAKTLGAKLMGVYVIPPYVPPVYGEAVIYVPEVTPKRYKEMTAREAKNALAAVETEAKAAGVDCKSVSVTADQAWEGIVRTAHSKSCDLIVMASHGRRGLSGLLLGSETTKVLTHSKTPVLVCR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F4B2A9_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B2A9_9PROT)

HSP 1 Score: 189 bits (481), Expect = 2.090e-59
Identity = 98/148 (66.22%), Postives = 115/148 (77.70%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILV TDGSKLSLKA++TAA+LA  LGA+L  VYV+P YVPP+YGEA +Y+PE TP+R+KE   + A  ALA    EA + GV C  + VT  Q W  I+  A S+ CDLVVMASHGRRGL+GLLLGSETTKVLTHSK+PVLVCR
Sbjct:    1 MYKHILVPTDGSKLSLKAVKTAATLAKTLGAKLMGVYVIPPYVPPVYGEAVIYMPEMTPRRYKEITRRHADEALAALETEAKSTGVTCKTVTVTADQAWDGIVRTAHSKGCDLVVMASHGRRGLSGLLLGSETTKVLTHSKIPVLVCR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A521VEB5_9PROT (Universal stress protein n=4 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521VEB5_9PROT)

HSP 1 Score: 186 bits (472), Expect = 4.890e-58
Identity = 94/148 (63.51%), Postives = 113/148 (76.35%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILV TDGS+LS+KA++TA +LA  L ARL  VYV+P YVPP+YGEA +Y+PE TPKR+KE  + EAK ALA       AAG+ C  + +T  Q W  I+  A ++ CDL+VMASHGRRGL+GLLLGSETTKVLTHSK PVLVCR
Sbjct:    1 MYKHILVPTDGSRLSVKAIKTAVALAKSLDARLMGVYVIPPYVPPVYGEAVIYVPEVTPKRYKEITQAEAKKALATVEXXXKAAGIDCKAVAMTADQAWDGIVRTAHAKGCDLIVMASHGRRGLSGLLLGSETTKVLTHSKTPVLVCR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F4H9K6_9PROT (Universal stress protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4H9K6_9PROT)

HSP 1 Score: 172 bits (435), Expect = 2.080e-52
Identity = 90/148 (60.81%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILVSTDGSKLS KA+RTA  LA   GA++T VYV+  ++ P YGE  MY+P  +P R+K+  E+EA+ ALA    EA   GV+     +T   PW  II AA++++ DL+VMASHGRRGLAGL+LGSETTKVLTHSKVPVLVCR
Sbjct:    1 MYKHILVSTDGSKLSGKAIRTAVKLADATGAKVTGVYVIAPFIAPAYGEGVMYMPAVSPARYKQITEREARKALAAVEIEARTGGVQYATTMLTADNPWEGIIRAAKAKRADLIVMASHGRRGLAGLVLGSETTKVLTHSKVPVLVCR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F4FBP1_9PROT (Usp domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FBP1_9PROT)

HSP 1 Score: 164 bits (416), Expect = 1.610e-49
Identity = 86/148 (58.11%), Postives = 106/148 (71.62%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            M++HIL+ TDGS+L+ +  R    LA  LGA++T V+V+P +VPP+YGE A+Y+P  +PK +KE  EK+AK ALAV   EA AA V C    VT   PW  I+  ARS+KCD V MASHGR GL GLLLGSETTKVL HSK+PVLV R
Sbjct:    1 MFRHILIPTDGSRLAARGARAGVKLAKALGAKVTGVFVIPPWVPPMYGEGAIYVPSMSPKGYKELTEKQAKKALAVIKIEAEAARVSCATQFVTADHPWQGILRVARSKKCDAVAMASHGRGGLGGLLLGSETTKVLAHSKIPVLVMR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1P8FPP8_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium GR16-43 TaxID=1904640 RepID=A0A1P8FPP8_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.810e-46
Identity = 89/149 (59.73%), Postives = 107/149 (71.81%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKR-FKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKH+LV TDGS LSLKA +TAA LA KLGA++TAVYV   ++PP+  E A Y      +  ++ A +  A+ AL   A  A AA V+C GI V+  QPW AII +A  +KCDL+VMASHGRRGLAGLL+GSET KVLTHSK PVLVCR
Sbjct:    1 MYKHLLVPTDGSPLSLKAAKTAAGLAKKLGAKITAVYVTAPWMPPMGSEGAAYSRMGEMEADYRRATKAAAEKALGRVADAAAAAKVKCDGIHVSNDQPWDAIIRSAVKQKCDLIVMASHGRRGLAGLLIGSETHKVLTHSKTPVLVCR 149          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F4ELA7_9PROT (Usp domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ELA7_9PROT)

HSP 1 Score: 153 bits (386), Expect = 5.980e-45
Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMY-IPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            M+KHIL+ TDGSKL+ K ++    LA  LGAR+T VYV+P Y+PP+YGEAA+Y +P+ +   ++++ E+ AK ALA    E   AGVRC    +  A P+  I+  AR+ KCD + MASHGR GL GLLLGSET++VL HSK+PVLV R
Sbjct:    1 MFKHILIPTDGSKLAAKGVKAGVKLAASLGARVTGVYVIPPYMPPMYGEAAVYYVPQVSAAEYRKSAERAAKKALAAVEIECQTAGVRCATRFIIAAHPYDGILRVARAAKCDAIAMASHGRGGLGGLLLGSETSRVLAHSKIPVLVTR 149          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: A0A1F3ZNP6_9PROT (Universal stress protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZNP6_9PROT)

HSP 1 Score: 150 bits (379), Expect = 6.700e-44
Identity = 85/148 (57.43%), Postives = 105/148 (70.95%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKHILV TDG++LS KA+R+AA LA  +GA+LT ++V+P Y   I G     +   +P  +++   K AKAAL      A AAGV CT + VT   PW AI+ +AR RKCDL+VMASHGRRGL+GLL+GSETTKVLT SKVPVLV R
Sbjct:    1 MYKHILVPTDGTRLSDKAIRSAAELAAVVGAKLTGLHVLPPYNLAISGYEIAPVVVFSPAEYRKVSAKTAKAALDKIEIAARAAGVSCTTLSVTDEHPWEAIVRSARDRKCDLIVMASHGRRGLSGLLIGSETTKVLTRSKVPVLVVR 148          
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Match: UPI001AD08860 (TRAP-T-associated universal stress protein TeaD n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI001AD08860)

HSP 1 Score: 149 bits (377), Expect = 1.310e-43
Identity = 81/148 (54.73%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEAAMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWAAIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR 444
            MYKH+LV+TDGSKLS KA+  A  LA  LGARLTA Y  P+Y  P+Y +  +Y P  + K +   + KEAK  L  AA +A AAGV C  + +    PW AI++AA+  KCD++VMASHGRRG++ LLLGSET KVLTH  VPV+V R
Sbjct:    1 MYKHLLVATDGSKLSTKAMTHAIGLAKSLGARLTAFYAAPDYPLPMYADGVVYEP-VSKKEYSAMMAKEAKKILDAAAAKAKAAGVECATVHMIAPAPWEAILAAAKKEKCDVIVMASHGRRGVSALLLGSETQKVLTHGTVPVIVIR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14213.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8B9Q0_9PROT5.670e-6471.62Universal stress protein n=1 Tax=Betaproteobacteri... [more]
A0A1F4FH88_9PROT1.330e-6268.24Universal stress protein n=2 Tax=unclassified Beta... [more]
A0A1F4B2A9_9PROT2.090e-5966.22Universal stress protein n=1 Tax=Betaproteobacteri... [more]
A0A521VEB5_9PROT4.890e-5863.51Universal stress protein n=4 Tax=unclassified Beta... [more]
A0A1F4H9K6_9PROT2.080e-5260.81Universal stress protein n=2 Tax=unclassified Beta... [more]
A0A1F4FBP1_9PROT1.610e-4958.11Usp domain-containing protein n=1 Tax=Betaproteoba... [more]
A0A1P8FPP8_9PROT1.810e-4659.73Universal stress protein n=1 Tax=Betaproteobacteri... [more]
A0A1F4ELA7_9PROT5.980e-4553.02Usp domain-containing protein n=2 Tax=unclassified... [more]
A0A1F3ZNP6_9PROT6.700e-4457.43Universal stress protein n=1 Tax=Betaproteobacteri... [more]
UPI001AD088601.310e-4354.73TRAP-T-associated universal stress protein TeaD n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14213contigP-wetherbeei_contig14213:55..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog85643.Tmz1t_1284
PFAMsUsp
Model size447
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.8e-39
EggNOG OGsCOG0589@1|root,COG0589@2|Bacteria,1MZ3K@1224|Proteobacteria,2VQAE@28216|Betaproteobacteria,2KW8T@206389|Rhodocyclales
DescriptionUniversal stress protein
Cds size447
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.4399805-CDS-P-wetherbeei_contig14213:54..5011683186013.4399805-CDS-P-wetherbeei_contig14213:54..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14213 55..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14213.1.1prot_P-wetherbeei_contig14213.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14213 55..501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14213.1.1

>prot_P-wetherbeei_contig14213.1.1 ID=prot_P-wetherbeei_contig14213.1.1|Name=mRNA_P-wetherbeei_contig14213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
MYKHILVSTDGSKLSLKALRTAASLAGKLGARLTAVYVMPEYVPPIYGEA
AMYIPEATPKRFKEAVEKEAKAALAVAAKEATAAGVRCTGIRVTKAQPWA
AIISAARSRKCDLVVMASHGRRGLAGLLLGSETTKVLTHSKVPVLVCR*
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mRNA from alignment at P-wetherbeei_contig14213:55..501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14213.1.1 ID=mRNA_P-wetherbeei_contig14213.1.1|Name=mRNA_P-wetherbeei_contig14213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig14213:55..501- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACAAGCACATCCTGGTTTCCACCGACGGCTCGAAGCTTTCGCTCAA GGCCCTGCGCACCGCCGCATCGCTTGCGGGCAAGCTCGGCGCCCGGCTCA CGGCCGTATACGTAATGCCCGAATACGTGCCGCCCATCTACGGTGAGGCG GCGATGTACATCCCGGAGGCCACGCCCAAGCGCTTCAAGGAGGCGGTCGA GAAGGAGGCCAAAGCGGCGCTGGCGGTGGCCGCGAAGGAAGCCACGGCCG CGGGCGTGCGCTGCACCGGCATCAGGGTCACGAAGGCACAGCCCTGGGCG GCGATCATCAGCGCGGCACGCAGCAGGAAGTGCGACCTGGTCGTCATGGC CTCGCACGGCCGCCGCGGCCTCGCGGGGCTCCTGCTCGGCAGCGAGACGA CCAAGGTACTGACGCACTCGAAGGTCCCCGTGCTGGTCTGCCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14213:55..501-

>mRNA_P-wetherbeei_contig14213.1.1 ID=mRNA_P-wetherbeei_contig14213.1.1|Name=mRNA_P-wetherbeei_contig14213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig14213:55..501- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACAAGCACATCCTGGTTTCCACCGACGGCTCGAAGCTTTCGCTCAA
GGCCCTGCGCACCGCCGCATCGCTTGCGGGCAAGCTCGGCGCCCGGCTCA
CGGCCGTATACGTAATGCCCGAATACGTGCCGCCCATCTACGGTGAGGCG
GCGATGTACATCCCGGAGGCCACGCCCAAGCGCTTCAAGGAGGCGGTCGA
GAAGGAGGCCAAAGCGGCGCTGGCGGTGGCCGCGAAGGAAGCCACGGCCG
CGGGCGTGCGCTGCACCGGCATCAGGGTCACGAAGGCACAGCCCTGGGCG
GCGATCATCAGCGCGGCACGCAGCAGGAAGTGCGACCTGGTCGTCATGGC
CTCGCACGGCCGCCGCGGCCTCGCGGGGCTCCTGCTCGGCAGCGAGACGA
CCAAGGTACTGACGCACTCGAAGGTCCCCGTGCTGGTCTGCCGCTAG
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