mRNA_P-wetherbeei_contig14212.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14212.1.1
Unique NamemRNA_P-wetherbeei_contig14212.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14212.1.1 vs. uniprot
Match: A0A6H5KNP8_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-9
Identity = 69/261 (26.44%), Postives = 96/261 (36.78%), Query Frame = 2 
Query:  182 SKIYHFFGAAAPSDAXXXXXKXXXXXXXXXXXXXXXSS-KCAKRSSASIPSPREVEGDAKWGALIDRRKQKAWALIQETVG-----VPPDRWLRRSFTATYRSVFQDERSPGVGSNSQWFAG--GTAFGGGRLMRR-----PRDMAAALASASLPDAYPVLVEDQDLEVSEAANDXXXXXXXXEGDAEGEAGYGRRWRRHDLENFALIMDWLSG----------------AGVCGHPQAA------TLLDVALGCRRDDAG 859
            SKI+H+FGA +P +      +                  +  K +    P P        WG L++ RKQ+ W +++   G     V P  W RRS++ +Y  VFQD R+PG+GS+S W        FGG R  R      PRD +       +PD+                                 A  G R R     NF  ++ WLS                 AG    P+AA      TLL++AL   R D G
Sbjct:   52 SKIFHYFGAGSPENGTPRKKRATSTPAAGAAGEVPQLVLRVTKPAKTVSPPPAPT-----WGKLVEPRKQRRWEMLRRLQGGGLGGVDPTAWARRSYSLSYTPVFQDLRTPGMGSSSGWGWAFQSQVFGGARACRASSSVPPRDRSDETDGNEVPDSVHAT-----------------------------AAAGGRSRALQSRNFKAMVAWLSSSHAASAVXXXXXXXXAAGALRSPRAAADPADKTLLEIAL--ERQDGG 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14212.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNP8_9PHAE1.090e-926.44Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14212contigP-wetherbeei_contig14212:635..1695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLL1
PFAMsHIRAN,VRR_NUC
Model size949
Max annot lvl2759|Eukaryota
KEGG koko:K15363
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.43e-10
EggNOG OGsKOG2143@1|root,KOG2143@2759|Eukaryota
EC3.1.4.1
Descriptionphosphodiesterase I activity
Cds size816
COG categoryS
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.4020677-UTR-P-wetherbeei_contig14212:634..7671683186013.4020677-UTR-P-wetherbeei_contig14212:634..767Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14212 635..767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186013.410562-CDS-P-wetherbeei_contig14212:767..11021683186013.410562-CDS-P-wetherbeei_contig14212:767..1102Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14212 768..1102 +
1683186013.417766-CDS-P-wetherbeei_contig14212:1214..16951683186013.417766-CDS-P-wetherbeei_contig14212:1214..1695Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14212 1215..1695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14212.1.1prot_P-wetherbeei_contig14212.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14212 768..1695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14212.1.1

>prot_P-wetherbeei_contig14212.1.1 ID=prot_P-wetherbeei_contig14212.1.1|Name=mRNA_P-wetherbeei_contig14212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
MKRGGKKGKSKATTPPSKIYHFFGAAAPSDAAEDAAKPAPKRKAQEENAN
SSSSKCAKRSSASIPSPREVEGDAKWGALIDRRKQKAWALIQETVGVPPD
RWLRRSFTATYRSVFQDERSPGVGSNSQWFAGGTAFGGGRLMRRPRDMAA
ALASASLPDAYPVLVEDQDLEVSEAANDDGGGGDDDEGDAEGEAGYGRRW
RRHDLENFALIMDWLSGAGVCGHPQAATLLDVALGCRRDDAGVSGGGDRR
RGCDFPGCHHSCDLERRDDVQW
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mRNA from alignment at P-wetherbeei_contig14212:635..1695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14212.1.1 ID=mRNA_P-wetherbeei_contig14212.1.1|Name=mRNA_P-wetherbeei_contig14212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1061bp|location=Sequence derived from alignment at P-wetherbeei_contig14212:635..1695+ (Phaeothamnion wetherbeei SAG_119_79)
TAGAAGATACTTTTTGGTGCATGAAACGAAAACGAGAAGATGGAAATACA
CCAAGCAGTCTCATCGCTCAGGTTGTGGTCCGACTAGCTGAGTTCACTTG
AGGGTACTTCACTCCCTCGCGCCAGTGGGACTTATGAAAAGGGGAGGGAA
GAAAGGCAAGAGCAAGGCAACGACGCCCCCTTCGAAGATCTATCACTTCT
TTGGCGCCGCCGCTCCGTCTGATGCCGCCGAGGATGCTGCAAAGCCTGCT
CCAAAAAGGAAAGCTCAGGAGGAGAACGCCAACTCGTCCAGCAGCAAGTG
CGCAAAGCGCAGTAGCGCGAGCATACCGTCGCCTCGAGAGGTAGAAGGGG
ACGCAAAATGGGGAGCGCTCATAGATCGGAGGAAGCAAAAAGCGTGGGCG
CTTATTCAGGAGACTGTCGGGGTTCCTCCAGACCGATGGCTCAGGCGCTC
GTTCACCGCGACTTACAGGTATTGCTACTGGTTCAAGGGACCCAATACAT
CTTCTTTTCGTCTGGTTTACCGTCGAAGACATTGAACCTTTCCCTTAAGA
AAGCTCGCGAGAATACACCCTTTGTGGCAGGTCCGTTTTTCAAGACGAGC
GGTCTCCCGGCGTCGGGTCGAACTCCCAGTGGTTCGCCGGTGGCACCGCC
TTTGGCGGCGGCCGCCTGATGCGCCGGCCTCGCGACATGGCGGCGGCTCT
GGCGTCCGCCTCTTTGCCAGACGCTTACCCCGTGCTGGTTGAGGACCAGG
ATCTCGAAGTTTCAGAGGCGGCTAACGACGACGGCGGCGGCGGCGACGAC
GACGAAGGCGATGCAGAAGGCGAAGCCGGCTACGGCAGGAGATGGCGTCG
CCACGACCTCGAGAACTTCGCGCTCATCATGGATTGGCTCTCCGGCGCAG
GGGTCTGCGGGCACCCTCAAGCCGCGACGCTACTTGACGTGGCACTAGGA
TGCCGTCGCGATGACGCTGGCGTGAGCGGCGGCGGTGATCGCCGGCGCGG
CTGTGATTTTCCGGGATGTCATCACAGCTGCGACCTTGAGCGCCGTGACG
ACGTGCAGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14212:635..1695+

>mRNA_P-wetherbeei_contig14212.1.1 ID=mRNA_P-wetherbeei_contig14212.1.1|Name=mRNA_P-wetherbeei_contig14212.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig14212:635..1695+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAGGGGAGGGAAGAAAGGCAAGAGCAAGGCAACGACGCCCCCTTC
GAAGATCTATCACTTCTTTGGCGCCGCCGCTCCGTCTGATGCCGCCGAGG
ATGCTGCAAAGCCTGCTCCAAAAAGGAAAGCTCAGGAGGAGAACGCCAAC
TCGTCCAGCAGCAAGTGCGCAAAGCGCAGTAGCGCGAGCATACCGTCGCC
TCGAGAGGTAGAAGGGGACGCAAAATGGGGAGCGCTCATAGATCGGAGGA
AGCAAAAAGCGTGGGCGCTTATTCAGGAGACTGTCGGGGTTCCTCCAGAC
CGATGGCTCAGGCGCTCGTTCACCGCGACTTACAGGTCCGTTTTTCAAGA
CGAGCGGTCTCCCGGCGTCGGGTCGAACTCCCAGTGGTTCGCCGGTGGCA
CCGCCTTTGGCGGCGGCCGCCTGATGCGCCGGCCTCGCGACATGGCGGCG
GCTCTGGCGTCCGCCTCTTTGCCAGACGCTTACCCCGTGCTGGTTGAGGA
CCAGGATCTCGAAGTTTCAGAGGCGGCTAACGACGACGGCGGCGGCGGCG
ACGACGACGAAGGCGATGCAGAAGGCGAAGCCGGCTACGGCAGGAGATGG
CGTCGCCACGACCTCGAGAACTTCGCGCTCATCATGGATTGGCTCTCCGG
CGCAGGGGTCTGCGGGCACCCTCAAGCCGCGACGCTACTTGACGTGGCAC
TAGGATGCCGTCGCGATGACGCTGGCGTGAGCGGCGGCGGTGATCGCCGG
CGCGGCTGTGATTTTCCGGGATGTCATCACAGCTGCGACCTTGAGCGCCG
TGACGACGTGCAGTGG
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