mRNA_P-wetherbeei_contig1420.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1420.3.1
Unique NamemRNA_P-wetherbeei_contig1420.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1420.3.1 vs. uniprot
Match: D8LQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ14_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.340e-32
Identity = 97/243 (39.92%), Postives = 142/243 (58.44%), Query Frame = 1 
Query:   91 PPIFTQLQQIQQEILVPALHLSPAATPEGLESR-EGLRGSRITNERFSGAAVSNMRVSYLQAPGIEVFSSAVY--PTCDVPVLGVSAMLMGPSCCMVAVDFQPLLRR---AAADADDPALAPLLAIKRRHPRLQQPLVRDTYRGSPFFSDGMLYARFA-NPVAD--LESEVLPAFREAVEAYAAVVAAAPL--PSADTAVAVRRRISEFDAFHAEREQAHSVVKASFGEAWANQYIERFLYPH 786
            P  F  L + Q   L   L L  +  P  +++     R SR+ N  ++G  V  +R+SYL  P ++V+S+  Y  P  D P+LG+SAM MG S  ++A+D QPL      AA  AD  A A L AI+ ++P+L + L +D Y+GSPFFSD M+YAR+     AD  ++  V+PAFRE ++AY  +V  AP   P + T  AV  R +EFD FHAEREQ   ++ + FG ++A+ Y+  FL+ +
Sbjct:  123 PLFFADLLRTQASTLEFELALGRSPVPRCMDTVCNPERRSRVRNLIYTGDRVRKVRMSYLDTPDMQVYSTVAYSAPGHDFPLLGLSAMAMG-SVRVLALDLQPLFPGEDYAAKYAD--ANAKLKAIRNKYPQLGEELRKDYYKGSPFFSDSMMYARWGPKEEADGFMDKVVMPAFRECMQAYVEIVNQAPAHAPGSPTEQAVLERQAEFDRFHAEREQVRPILTSKFGASFADTYVSDFLFAY 362
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1420.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ14_ECTSI2.340e-3239.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1420contigP-wetherbeei_contig1420:3792..5956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog102129.Lepto7375DRAFT_3196
Preferred namepebA
PFAMsFe_bilin_red
Model size1659
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01474
KEGG koko:K05369
KEGG ReactionR05818
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.82e-21
EggNOG OGs28II3@1|root,2Z8J9@2|Bacteria,1G1W0@1117|Cyanobacteria,1H7ZC@1150|Oscillatoriales
Ec32 ortholog descriptionFerredoxin-dependent bilin reductase
Ec32 orthologEc-15_001330.1
EC1.3.7.2
DescriptionBelongs to the HY2 family
Cds size900
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.867331-UTR-P-wetherbeei_contig1420:3791..45201683186012.867331-UTR-P-wetherbeei_contig1420:3791..4520Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1420 3792..4520 -
1683186012.9027848-UTR-P-wetherbeei_contig1420:5926..59561683186012.9027848-UTR-P-wetherbeei_contig1420:5926..5956Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1420 5927..5956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.8776164-CDS-P-wetherbeei_contig1420:4520..51341683186012.8776164-CDS-P-wetherbeei_contig1420:4520..5134Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1420 4521..5134 -
1683186012.88585-CDS-P-wetherbeei_contig1420:5399..54211683186012.88585-CDS-P-wetherbeei_contig1420:5399..5421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1420 5400..5421 -
1683186012.894217-CDS-P-wetherbeei_contig1420:5662..59261683186012.894217-CDS-P-wetherbeei_contig1420:5662..5926Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1420 5663..5926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1420.3.1prot_P-wetherbeei_contig1420.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1420 4521..5926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1420.3.1

>prot_P-wetherbeei_contig1420.3.1 ID=prot_P-wetherbeei_contig1420.3.1|Name=mRNA_P-wetherbeei_contig1420.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
MIAFPRCPVDHAVEASKAKPPPIFTQLQQIQQEILVPALHLSPAATPEGL
ESREGLRGSRITNERFSGAAVSNMRVSYLQAPGIEVFSSAVYPTCDVPVL
GVSAMLMGPSCCMVAVDFQPLLRRAAADADDPALAPLLAIKRRHPRLQQP
LVRDTYRGSPFFSDGMLYARFANPVADLESEVLPAFREAVEAYAAVVAAA
PLPSADTAVAVRRRISEFDAFHAEREQAHSVVKASFGEAWANQYIERFLY
PHACLLAAEGGGVGGASAGSGGAGGAVVTALKPPEAAAAAAAASTARTE*
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mRNA from alignment at P-wetherbeei_contig1420:3792..5956-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1420.3.1 ID=mRNA_P-wetherbeei_contig1420.3.1|Name=mRNA_P-wetherbeei_contig1420.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2165bp|location=Sequence derived from alignment at P-wetherbeei_contig1420:3792..5956- (Phaeothamnion wetherbeei SAG_119_79)
GCTGTTGTCAATGCTTTCTCTTCATTCAAGATGATAGCATTTCCGAGATG
CCCGGTGGATCACGCCGTCGAAGCAAGCAAGGCGAAGCCGCCTCCAATCT
TTACGCAGCTCCAGCAAATTCAGCAAGAGATCCTCGTTCCAGCGCTCCAC
CTCTCGCCAGCAGCGACTCCCGAGGGACTGGAGAGCCGAGAAGGTTTGAG
GGGAAGCCGAATCACAAACGAACGGTTTTCTGGTGCCGCCGTCAGCAACA
TGCGTGTCTCGTATCTCCAGGCGCCGGGAATAGAGGTCTTCTCGGTGAGT
GGGCTTTTACAGATTTCTGCAAAAAGCGGCCACCAGGCCGGTACTGCAAC
TTGAGTTTTCGCGAGCATGCGTTTGCGTGAAATATGCATGTGCTTGATCG
GCTTATTTCCTTAGCGAAGCAGGGCTTCGCATCGTACTAACTTCCGCAAC
AAAGGTGTGCCTGGCGTTTTCACGAAACCACCCTCCACCCAATCGCTTGT
TGCCTTCCCTTGGCCGCTATTCGGGCTTTTATCAGAGCGCTGTGTATCCT
ACCTGTGGTGAGTGTGTCGTAAAGTTGCGTTCGGGAAGAGCGGTTTGCTG
TTACAGGACCGTTTCGTTGTGCAACGTAAATGGGCACTTCCTGCCAGTTC
CGCGCTCTTGTGCGCACCCGTCTTCGGGTTGCTTTAGGCCAGACTCGATT
CTTCTGGGCAGCTTCCCGGATGCGTCGCTATTTCTGCGCCTCTCGTCTCT
TCCCGTCAAATACCTCATCCATTTCTTGTCCGCTTGTTTCCCTTTCTGAA
ACTGCCGCCGCCTCTTCCGCAGATGTGCCGGTGCTGGGCGTCAGCGCGAT
GTTAATGGGACCGTCCTGCTGCATGGTGGCGGTCGACTTCCAGCCGCTGC
TGCGCCGTGCTGCCGCCGATGCGGACGATCCTGCCCTGGCGCCGCTCCTC
GCCATCAAGCGCCGCCACCCGCGGCTGCAGCAGCCGCTGGTGCGCGACAC
GTACCGCGGCTCACCCTTCTTCTCCGACGGAATGCTCTACGCGCGCTTTG
CAAATCCGGTCGCTGACCTGGAGTCCGAGGTGCTTCCGGCGTTCCGTGAG
GCCGTGGAGGCGTACGCGGCGGTCGTGGCGGCGGCGCCACTGCCGTCCGC
CGACACTGCCGTCGCCGTCCGCCGGCGGATCTCCGAGTTCGATGCCTTCC
ACGCGGAGCGCGAGCAGGCGCACAGTGTGGTGAAGGCGTCGTTCGGTGAG
GCGTGGGCCAACCAATACATCGAGCGCTTTCTCTACCCGCACGCCTGCCT
TCTCGCCGCCGAAGGGGGCGGCGTCGGCGGCGCCAGCGCTGGCAGCGGTG
GCGCTGGTGGCGCAGTCGTCACCGCGCTGAAGCCGCCAGAGGCTGCGGCG
GCTGCCGCCGCGGCGTCGACGGCGAGAACAGAATGAGCGGCAGCAGCGGC
GACGGCAGCGGTGGCAAGCGACAGTGCGACTGGCTCCTGCTGCCAGCCAT
GGTGTTTGCCAACTTTGGCTGGCATCCCAACAGCCGTGCGACAGCCTCAG
CGTTTTCCTGTCACGCGGCGTTTCCAAAGGCCTGCTGGTGTCTCTGCACG
CAAGTTGCGGTGAAGTTTGGGGAGGGGTAAAGAAAGATCCTATAGCGGCG
GGCTTGGCGTCCGGCGCATAAGTGTAACCTTAGCAAGAACGAAGGAGAAA
AGGGAATGTGTGCGTGCGTCCTAGGTTTTCGATTGGGATAGGAGTATAGT
CGGGGTCGGGTCGTGTTGGATCGGGCGGGGAACAGGCGGGGGGCGTAAGA
ATGTGTTCCTTTGAACGCGTAGTGCCTGAAGGGAGAATATTGTGCGTTTC
TACCTCGGCGGGGAGTAAAGGAGATACCAAAAAATCGTAGGAGCTAGATA
CGGAGAATGAAGGAAGAGAAAAGGGGAGGAAAGAGGAACTTGGCCGTGGC
GTCCGGCCAGGCGGCCAGAATGTTCCCGGCCGCGTACGTGCACCCGGCGG
TGCCGCCAGCGGGAGCGGAAGCGGTGGCGATGCTGCCGGGGCATGGCGTG
GCGCGGCGCGGCGTGGGGGGTTTTCCAGGCTCGGACACCGCCGACGGGCC
GCAGTGACGGTGACTGACGTATCGCAAGGTGGGGGAAGTAAATGAGAAGA
AACAATAAAATATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1420:3792..5956-

>mRNA_P-wetherbeei_contig1420.3.1 ID=mRNA_P-wetherbeei_contig1420.3.1|Name=mRNA_P-wetherbeei_contig1420.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig1420:3792..5956- (Phaeothamnion wetherbeei SAG_119_79)
ATGATAGCATTTCCGAGATGCCCGGTGGATCACGCCGTCGAAGCAAGCAA
GGCGAAGCCGCCTCCAATCTTTACGCAGCTCCAGCAAATTCAGCAAGAGA
TCCTCGTTCCAGCGCTCCACCTCTCGCCAGCAGCGACTCCCGAGGGACTG
GAGAGCCGAGAAGGTTTGAGGGGAAGCCGAATCACAAACGAACGGTTTTC
TGGTGCCGCCGTCAGCAACATGCGTGTCTCGTATCTCCAGGCGCCGGGAA
TAGAGGTCTTCTCGAGCGCTGTGTATCCTACCTGTGATGTGCCGGTGCTG
GGCGTCAGCGCGATGTTAATGGGACCGTCCTGCTGCATGGTGGCGGTCGA
CTTCCAGCCGCTGCTGCGCCGTGCTGCCGCCGATGCGGACGATCCTGCCC
TGGCGCCGCTCCTCGCCATCAAGCGCCGCCACCCGCGGCTGCAGCAGCCG
CTGGTGCGCGACACGTACCGCGGCTCACCCTTCTTCTCCGACGGAATGCT
CTACGCGCGCTTTGCAAATCCGGTCGCTGACCTGGAGTCCGAGGTGCTTC
CGGCGTTCCGTGAGGCCGTGGAGGCGTACGCGGCGGTCGTGGCGGCGGCG
CCACTGCCGTCCGCCGACACTGCCGTCGCCGTCCGCCGGCGGATCTCCGA
GTTCGATGCCTTCCACGCGGAGCGCGAGCAGGCGCACAGTGTGGTGAAGG
CGTCGTTCGGTGAGGCGTGGGCCAACCAATACATCGAGCGCTTTCTCTAC
CCGCACGCCTGCCTTCTCGCCGCCGAAGGGGGCGGCGTCGGCGGCGCCAG
CGCTGGCAGCGGTGGCGCTGGTGGCGCAGTCGTCACCGCGCTGAAGCCGC
CAGAGGCTGCGGCGGCTGCCGCCGCGGCGTCGACGGCGAGAACAGAATGA
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