mRNA_P-wetherbeei_contig14198.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14198.1.1
Unique NamemRNA_P-wetherbeei_contig14198.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14198contigP-wetherbeei_contig14198:1229..1675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.5528886-UTR-P-wetherbeei_contig14198:1228..13791683186012.5528886-UTR-P-wetherbeei_contig14198:1228..1379Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14198 1229..1379 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.5630407-CDS-P-wetherbeei_contig14198:1379..15491683186012.5630407-CDS-P-wetherbeei_contig14198:1379..1549Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14198 1380..1549 -
1683186012.5722039-CDS-P-wetherbeei_contig14198:1647..16751683186012.5722039-CDS-P-wetherbeei_contig14198:1647..1675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14198 1648..1675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14198.1.1prot_P-wetherbeei_contig14198.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14198 1380..1675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14198.1.1

>prot_P-wetherbeei_contig14198.1.1 ID=prot_P-wetherbeei_contig14198.1.1|Name=mRNA_P-wetherbeei_contig14198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
APQHAHKDGGPSAGSCEGSCEQACGRRGRYERGEFPRGANHFFAQWNRAG
KGKARSRVLTETALN*
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mRNA from alignment at P-wetherbeei_contig14198:1229..1675-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14198.1.1 ID=mRNA_P-wetherbeei_contig14198.1.1|Name=mRNA_P-wetherbeei_contig14198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig14198:1229..1675- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCAGCACGCGCACAAAGACGGAGGTGACGTGTGCTCTGGAATCGC
CTCCTTACGCAGCTGACTTGTTCCAACATTTTAAAATTCCTTTCCCGCTG
ACCTTTCTGCAATCTCGTGAACGCAGGCCCCAGCGCCGGCTCCTGCGAAG
GCTCCTGCGAGCAAGCGTGCGGCAGACGGGGAAGGTATGAACGCGGTGAA
TTTCCACGAGGCGCCAATCATTTCTTCGCCCAGTGGAACCGCGCTGGAAA
AGGGAAAGCGCGTTCACGCGTCCTGACCGAGACGGCGTTGAACTAAATTC
TGCGAAGTCTCTATTTTTCCTCCATCCTTCTCATCAAAGCACTTTCCTCC
CTTTCCCCTCGTCACCTCAACTGTTTCCCCGTCGCTCACGGCCGCAGCAA
CGAAGGCGCCTGCCAAGCGCGGGAAGAAGAAGGATGCCGAAGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14198:1229..1675-

>mRNA_P-wetherbeei_contig14198.1.1 ID=mRNA_P-wetherbeei_contig14198.1.1|Name=mRNA_P-wetherbeei_contig14198.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig14198:1229..1675- (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGCAGCACGCGCACAAAGACGGAGGCCCCAGCGCCGGCTCCTGCGA
AGGCTCCTGCGAGCAAGCGTGCGGCAGACGGGGAAGGTATGAACGCGGTG
AATTTCCACGAGGCGCCAATCATTTCTTCGCCCAGTGGAACCGCGCTGGA
AAAGGGAAAGCGCGTTCACGCGTCCTGACCGAGACGGCGTTGAACTAA
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