mRNA_P-wetherbeei_contig1419.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1419.3.1
Unique NamemRNA_P-wetherbeei_contig1419.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A316SB72_9FIRM (Uncharacterized protein n=1 Tax=Oscillospiraceae bacterium TaxID=2485925 RepID=A0A316SB72_9FIRM)

HSP 1 Score: 73.9 bits (180), Expect = 7.820e-13
Identity = 54/132 (40.91%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    4 FGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVL---VVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            F R PW +APFV SMFVLV AL   G+T A+ D             S  ++ GT   F  SS L  N++NN+P +VL   V+ ALP           +AA+   +VG N+GA+ T +GALAG+MW   +R H
Sbjct:  291 FVRAPWDLAPFVLSMFVLVLALEKHGVTAALGDVLT----------SPRTVAGTLLSFGGSSFLAANLVNNIPMSVLYRSVISALPA-----GAGNGTAALYAAVVGSNLGAFFTPMGALAGIMWTGQLRDH 407          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A410FWE6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Bipolaricaulis sibiricus TaxID=2501609 RepID=A0A410FWE6_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-11
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 AFGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIM 381
            A  RVPW I PFV S+FV V AL   G+T  + D  +          S GS+   A  +  SSAL  NVLNN+P T+    A      A +     AA +G  +G N+GA LT +GALAG+MW  I+
Sbjct:  301 AMRRVPWPIVPFVLSLFVTVYALRVYGITGRLGDVLLAL--------SGGSVPLLAILYGVSSALAANVLNNIPMTLAFASA----TGALSGMPLLAAALGTAIGSNLGANLTPIGALAGIMWMTIL 415          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A3D2K9R0_9FIRM (Uncharacterized protein (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D2K9R0_9FIRM)

HSP 1 Score: 66.2 bits (160), Expect = 1.410e-10
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   10 RVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVG---TAAFFAASSALVVNVLNNLPATVL---VVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            R PW + PFV SMFVL+ AL   G+T  I                 GSL+G   T A + A S L  NV+NN+P +VL   +V  LP         +   A    ++G N+GA+LT +GALAG+MW ++++ H
Sbjct:   90 RAPWQLVPFVLSMFVLILALEQQGVTAKI-----------------GSLLGSKATIAKYGALSFLFANVINNIPMSVLFCPIVGTLPA-------GQTLPAAYATVIGSNLGAFLTPIGALAGIMWLSLLKKH 198          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A2V2FJU3_9FIRM (Uncharacterized protein n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A2V2FJU3_9FIRM)

HSP 1 Score: 66.6 bits (161), Expect = 2.900e-10
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 AFGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTA---AFFAASSALVVNVLNNLPATVL---VVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            A    PW I PF+ SMFVLV AL   G TR+I                 G+ +G+A   A +  SS L  N++NN+P +VL   VV  LP           +AA+   ++G N+GA+ T +GALAG+MW  ++++H
Sbjct:  290 AIHAAPWEIVPFILSMFVLVLALDKYGFTRSI-----------------GAFLGSAHPVASYGVSSFLAANLINNIPMSVLFSSVVSDLP-------SSAHTAALYASVIGSNLGAFFTPLGALAGIMWTGMLKNH 401          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A7C5W6B9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C5W6B9_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 2.960e-10
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    1 AFGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRS 387
            AF R+PW I PFV S+F+ V AL   G+T ++         E   GGS   LV     +  +SAL  N LNN+P T+    A+    R    +   AA +   +G N+GA +T +GALAG+MW +I+++
Sbjct:  310 AFVRMPWTIVPFVLSLFITVGALHYYGVTSSLGRIL-----EAAAGGSCQRLVW---LYGLTSALAANALNNIPMTLAFASAM----REMTGQPLLAAALSTTIGSNLGANITPIGALAGIMWLSILKT 426          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: UPI001EE2F9D0 (SLC13 family permease n=1 Tax=Faecalibacterium gallinarum TaxID=2903556 RepID=UPI001EE2F9D0)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   10 RVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            ++PWA+ PF+ SMFVL+ AL  AG+T  +A       S  D   ++G      A FAAS     NV+NN+P +VL    L   C+A       A V  +++G N+GA LT VGALAG+MW +I++ H
Sbjct:  293 KLPWALTPFLLSMFVLILALNQAGVTETLAH------SLPDNPFAYGL-----ASFAAS-----NVINNIPMSVLFTSILGS-CQAT-----PAMVYAVILGSNLGALLTPVGALAGIMWLSIIKEH 397          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A842ZP86_9ARCH (Uncharacterized protein n=1 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A842ZP86_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 1.390e-9
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   10 RVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMR 384
            ++P +I PFV SMF+ V AL   G+TR   D  +   S C       S   T   +  SSA   NVLNN+P TV  V     +  A +      AV+   +G N+GA +T +GALAG+MW +I+R
Sbjct:  310 KMPLSIIPFVLSMFITVEALRIYGITR---DIGIFFNSLCGA-----STTATTFVYGISSAFAANVLNNIPMTVAYVP----IAGAVSHVNLLPAVLATTIGSNLGANITPIGALAGIMWMSILR 422          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A507C6E4_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C6E4_9FUNG)

HSP 1 Score: 64.7 bits (156), Expect = 1.520e-9
Identity = 54/140 (38.57%), Postives = 72/140 (51.43%), Query Frame = 1
Query:    1 AFGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAAS--SALVVNVLNNLPATVLVVDAL--PVLCR------AYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            A  R PW I PF   MFVLV +L A   T  +A   +     C            AA FA    SAL  ++LNNLP T+L V  L  P          A+ ++ + AA+ GL+VG N+GA LT V +LAGLMW+ +++ H
Sbjct:  440 AISRCPWRIGPFALGMFVLVESLNALNWTAVLA---IGIARICQ--------TVPAAIFAIGFLSALACSLLNNLPMTILAVRILQHPNFSAGVGGDAAHQQQIYQAALWGLVVGSNIGADLTFVASLAGLMWSELLKMH 568          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A3D5B2R8_9FIRM (Uncharacterized protein n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A3D5B2R8_9FIRM)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-9
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   10 RVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVG---TAAFFAASSALVVNVLNNLPATVL---VVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            R PW + PFV  MFVL+ AL   G+T  I                 GSL+G   T A + A S L  NV+NN+P +VL   +V  LP         +   A    ++G N+GA+LT +GALAG+MW ++++ H
Sbjct:  293 RAPWQLVPFVLGMFVLILALEQQGVTAKI-----------------GSLLGAKATIAKYGALSFLSANVINNIPMSVLFCPIVGTLPA-------GQTLPAAYATVIGSNLGAFLTPIGALAGIMWLSLLKKH 401          
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Match: A0A1V5HPK4_9BACT (Arsenical pump membrane protein n=1 Tax=Tenericutes bacterium ADurb.BinA124 TaxID=1852921 RepID=A0A1V5HPK4_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.870e-9
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   10 RVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFGSLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVMGLLVGLNVGAYLTLVGALAGLMWAAIMRSH 390
            R PW++ PFV SMF  V  L   G+T +IA             G    ++G    F  +S L  N++NN+P T+L  D L  +          AAV    +G N+GAYLT +GALAG+MW  I++  
Sbjct:  295 RTPWSLVPFVVSMFAFVLVLNRDGITTSIAGWL----------GKMNPIMG----FGLTSFLAANIINNIPMTILYTDILESVLPIAQTPALYAAV----IGSNIGAYLTPIGALAGIMWMQILKKQ 403          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1419.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A316SB72_9FIRM7.820e-1340.91Uncharacterized protein n=1 Tax=Oscillospiraceae b... [more]
A0A410FWE6_9BACT1.320e-1140.94Uncharacterized protein n=1 Tax=Candidatus Bipolar... [more]
A0A3D2K9R0_9FIRM1.410e-1037.59Uncharacterized protein (Fragment) n=1 Tax=Clostri... [more]
A0A2V2FJU3_9FIRM2.900e-1036.76Uncharacterized protein n=1 Tax=Clostridia bacteri... [more]
A0A7C5W6B9_9BACT2.960e-1037.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
UPI001EE2F9D01.000e-940.94SLC13 family permease n=1 Tax=Faecalibacterium gal... [more]
A0A842ZP86_9ARCH1.390e-938.40Uncharacterized protein n=1 Tax=Thermoplasmata arc... [more]
A0A507C6E4_9FUNG1.520e-938.57Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A3D5B2R8_9FIRM1.870e-936.84Uncharacterized protein n=1 Tax=Clostridiales bact... [more]
A0A1V5HPK4_9BACT1.870e-936.22Arsenical pump membrane protein n=1 Tax=Tenericute... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1419contigP-wetherbeei_contig1419:6699..7211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog441768.ACL_0141
Preferred namearsB
PFAMsArsB,CitMHS
Model size390
Max annot lvl2|Bacteria
KEGG koko:K03893
KEGG TC2.A.45.1,3.A.4.1
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008490,GO:0008509,GO:0015075,GO:0015103,GO:0015104,GO:0015105,GO:0015291,GO:0015318,GO:0015698,GO:0015699,GO:0015700,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0042960,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098656
Exons2
Evalue9.32e-09
EggNOG OGsCOG1055@1|root,COG1055@2|Bacteria
Descriptionarsenite transmembrane transporter activity
Cds size390
COG categoryP
BiGG ReactioniAF1260.b3502,iB21_1397.B21_03304,iBWG_1329.BWG_3192,iECBD_1354.ECBD_0238,iECB_1328.ECB_03351,iECDH10B_1368.ECDH10B_3678,iECDH1ME8569_1439.ECDH1ME8569_3381,iECD_1391.ECD_03351,iECH74115_1262.ECH74115_4851,iECIAI1_1343.ECIAI1_3649,iECO103_1326.ECO103_4229,iECO111_1330.ECO111_4311,iECO26_1355.ECO26_4590,iECSE_1348.ECSE_3768,iECSP_1301.ECSP_4482,iECs_1301.ECs4374,iETEC_1333.ETEC_3749,iEcDH1_1363.EcDH1_0212,iEcE24377_1341.EcE24377A_3985,iEcHS_1320.EcHS_A3704,iEcolC_1368.EcolC_0214,iG2583_1286.G2583_4228,iJO1366.b3502,iSFV_1184.SFV_3514,iSF_1195.SF3535,iS_1188.S4233,iUMNK88_1353.UMNK88_4279,iY75_1357.Y75_RS19690,iZ_1308.Z4904
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186012.2375834-CDS-P-wetherbeei_contig1419:6698..69641683186012.2375834-CDS-P-wetherbeei_contig1419:6698..6964Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1419 6699..6964 -
1683186012.2506058-CDS-P-wetherbeei_contig1419:7087..72111683186012.2506058-CDS-P-wetherbeei_contig1419:7087..7211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1419 7088..7211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1419.3.1prot_P-wetherbeei_contig1419.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1419 6699..7211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1419.3.1

>prot_P-wetherbeei_contig1419.3.1 ID=prot_P-wetherbeei_contig1419.3.1|Name=mRNA_P-wetherbeei_contig1419.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
AFGRVPWAIAPFVFSMFVLVSALTAAGLTRAIADAAVVAGSECDGGGSFG
SLVGTAAFFAASSALVVNVLNNLPATVLVVDALPVLCRAYNRRRFSAAVM
GLLVGLNVGAYLTLVGALAGLMWAAIMRSH
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mRNA from alignment at P-wetherbeei_contig1419:6699..7211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1419.3.1 ID=mRNA_P-wetherbeei_contig1419.3.1|Name=mRNA_P-wetherbeei_contig1419.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig1419:6699..7211- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGGCCGCGTGCCATGGGCCATCGCTCCCTTCGTCTTTTCCATGTT TGTCCTCGTCTCGGCCCTCACCGCTGCCGGACTGACGCGCGCCATCGCCG ATGCCGCCGTTGTCGCCGGCTCCGGTGGCACCTACGACGGCTCGGCCTCG GGAAATAACTGCTACAGCAGCATCGGCAGTGATAGCAGCGGCAGTGGCAG CAGCAATGGCACCGATGGTGGCGGCGGCGGCGAAAGCAGCAGCGAAGAAT GCGACGGCGGCGGGAGCTTCGGGTCGCTGGTGGGCACCGCTGCCTTCTTC GCGGCGTCGAGCGCCCTCGTCGTCAACGTGCTCAACAACTTGCCAGCCAC CGTTTTGGTCGTCGACGCGCTGCCGGTACTCTGCCGCGCCTACAACCGGC GGCGCTTCTCGGCGGCGGTCATGGGGCTCCTTGTCGGCCTCAACGTCGGC GCTTACCTGACGCTTGTCGGGGCGCTCGCGGGGCTCATGTGGGCAGCCAT CATGCGGTCGCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1419:6699..7211-

>mRNA_P-wetherbeei_contig1419.3.1 ID=mRNA_P-wetherbeei_contig1419.3.1|Name=mRNA_P-wetherbeei_contig1419.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig1419:6699..7211- (Phaeothamnion wetherbeei SAG_119_79)
GCCTTCGGCCGCGTGCCATGGGCCATCGCTCCCTTCGTCTTTTCCATGTT
TGTCCTCGTCTCGGCCCTCACCGCTGCCGGACTGACGCGCGCCATCGCCG
ATGCCGCCGTTGTCGCCGGCTCCGAATGCGACGGCGGCGGGAGCTTCGGG
TCGCTGGTGGGCACCGCTGCCTTCTTCGCGGCGTCGAGCGCCCTCGTCGT
CAACGTGCTCAACAACTTGCCAGCCACCGTTTTGGTCGTCGACGCGCTGC
CGGTACTCTGCCGCGCCTACAACCGGCGGCGCTTCTCGGCGGCGGTCATG
GGGCTCCTTGTCGGCCTCAACGTCGGCGCTTACCTGACGCTTGTCGGGGC
GCTCGCGGGGCTCATGTGGGCAGCCATCATGCGGTCGCAT
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