mRNA_P-wetherbeei_contig14177.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14177.1.1
Unique NamemRNA_P-wetherbeei_contig14177.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A7C1TXZ0_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TXZ0_9GAMM)

HSP 1 Score: 182 bits (461), Expect = 9.210e-57
Identity = 97/132 (73.48%), Postives = 116/132 (87.88%), Query Frame = 1 
Query:   13 VKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            V+ E+EPYD INITPM+DL +VLL+IFIIMTTASVQG+ VNLP+ASS  SLAKP+TKA+TITA+G I+LDTYPVTL +LES L    A++ +LPVV+KGDS+VQYQLV+DVLDL GR+ ITQIGLVTQKLVK
Sbjct:    3 VQEENEPYDDINITPMLDLAYVLLIIFIIMTTASVQGIAVNLPKASSTPSLAKPQTKAITITADGAIYLDTYPVTLGQLESTLLQYKAVNPQLPVVVKGDSSVQYQLVVDVLDLLGRLDITQIGLVTQKLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A401JBZ6_9PROT (Biopolymer transport protein ExbD/TolR n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A401JBZ6_9PROT)

HSP 1 Score: 179 bits (454), Expect = 1.070e-55
Identity = 95/133 (71.43%), Postives = 116/133 (87.22%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            +++ ++EPYD INITPM+DL +VLL+IFIIMTTA+VQG+KVNLP+AS+  SLAKPKTKAVTI A G I+LDTYPVTLAELESRL S  AI  +LPVVIKGDS +QY+ V++V+DL GR+ ITQ+GLVTQKLVK
Sbjct:    2 DLREDNEPYDDINITPMLDLAYVLLVIFIIMTTATVQGIKVNLPKASATPSLAKPKTKAVTIDANGQIYLDTYPVTLAELESRLRSFKAITPDLPVVIKGDSKIQYEKVIEVMDLCGRLDITQLGLVTQKLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A7Y8SWK8_9PROT (Biopolymer transporter ExbD n=1 Tax=Hydrogenophilaceae bacterium TaxID=2723029 RepID=A0A7Y8SWK8_9PROT)

HSP 1 Score: 175 bits (444), Expect = 3.690e-54
Identity = 92/131 (70.23%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:    7 AEVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQK 399
            AE++ ++EP+D INITPM+DL +VLL+IFIIMTTASVQGVKVNLP+AS   S+AKPKTK++TI A G ++LDTYPVT+AELESRL ++ A   +LPVVIKGD+TVQYQLV+DVLDL GR+ ITQ+GLVT K
Sbjct:    2 AEIREDNEPFDDINITPMLDLAYVLLVIFIIMTTASVQGVKVNLPKASDTPSIAKPKTKSITIDASGQVYLDTYPVTMAELESRLRAIKAAVPDLPVVIKGDATVQYQLVVDVLDLCGRLEITQLGLVTAK 132
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A4R3YG59_9PROT (Outer membrane transport energization protein ExbD n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3YG59_9PROT)

HSP 1 Score: 174 bits (441), Expect = 1.020e-53
Identity = 92/133 (69.17%), Postives = 114/133 (85.71%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            +V+ E++PYD INITPM+DL +VLL+IFIIMTTASVQG+KVNLP+ASS+ SLAKP TKAVTI  +G IFLDTYPVTLAELE+RL  + A+  + PVVIKGD+ VQY  V++VL+L GR+ ITQ+GLVTQ+LVK
Sbjct:    2 KVQAENQPYDEINITPMLDLAYVLLIIFIIMTTASVQGIKVNLPKASSSPSLAKPSTKAVTIAEDGQIFLDTYPVTLAELETRLQQMKAVTPDFPVVIKGDAHVQYDKVVEVLELLGRLDITQLGLVTQRLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A6L4YDD1_9RHOO (Biopolymer transport protein ExbD n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A6L4YDD1_9RHOO)

HSP 1 Score: 173 bits (439), Expect = 2.060e-53
Identity = 91/133 (68.42%), Postives = 115/133 (86.47%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            +V+ E+EPYD INITPM+DL +VLL+IFIIMTTASVQG+KVNLP+AS+A SLAKP TKA+T+TAEG IFLD YPVTL ELE+ L +  A++ + PVV+KGDS VQY+ V++VLDL GR+ I+Q+GLVTQ+LVK
Sbjct:    2 KVQDENEPYDEINITPMLDLAYVLLIIFIIMTTASVQGIKVNLPKASAAPSLAKPSTKAITVTAEGRIFLDAYPVTLDELETMLRNHKAVNPDFPVVVKGDSQVQYEKVVEVLDLLGRLEISQLGLVTQRLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A0E9MB75_9PROT (Biopolymer transporter ExbD n=2 Tax=Betaproteobacteria TaxID=28216 RepID=A0A0E9MB75_9PROT)

HSP 1 Score: 172 bits (435), Expect = 8.370e-53
Identity = 91/133 (68.42%), Postives = 113/133 (84.96%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            +++  +EPYD INITPM+DL +VLL+IFIIMTTA+VQG+KVNLP+AS+  SLAKPKTKAVTI A G ++LDTYPVT+AELESRL S  AI  +LPVVIKGD+T+QY  V++V+DL GR+ ITQ+GLVTQK  K
Sbjct:    2 DLREGNEPYDDINITPMLDLAYVLLVIFIIMTTATVQGIKVNLPKASTTPSLAKPKTKAVTIDANGQVYLDTYPVTIAELESRLRSFKAITPDLPVVIKGDTTIQYGKVVEVMDLCGRLDITQLGLVTQKPAK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A352KKQ7_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A352KKQ7_9GAMM)

HSP 1 Score: 171 bits (434), Expect = 1.190e-52
Identity = 88/133 (66.17%), Postives = 116/133 (87.22%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            + + E+EPYD INITPM+DL+FVLL+IFIIMTTA+VQG++VNLP+AS   SL++P+TKAVTIT +G+I+LDTYPVTLA+LE+RL  L A+D ELPV+IK D+ +QYQ V+DVLD+  R+ I+Q+GLVTQ+LVK
Sbjct:    2 KAQEENEPYDDINITPMLDLSFVLLIIFIIMTTATVQGIEVNLPKASDTPSLSEPRTKAVTITQDGSIYLDTYPVTLADLEARLRQLRAVDPELPVIIKADALIQYQRVVDVLDIMNRLEISQLGLVTQRLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A3B8X0K0_9GAMM (Biopolymer transporter ExbD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3B8X0K0_9GAMM)

HSP 1 Score: 170 bits (430), Expect = 4.830e-52
Identity = 86/133 (64.66%), Postives = 113/133 (84.96%), Query Frame = 1 
Query:   10 EVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            +++ ++EPYD INITPM+D+ +VLL+IFI+MTTA+VQG+ VNLP AS+A SL+KP+TKA+TITAEG +FLDTYPV++ ELES LA   A + ELPVV+KGD+ +QYQ V++VLDL G + ITQ+GLVTQ LVK
Sbjct:    2 DIRADNEPYDDINITPMLDVAYVLLVIFIVMTTATVQGISVNLPSASAAPSLSKPQTKAITITAEGTVFLDTYPVSMTELESLLAQHRAANPELPVVVKGDAQIQYQRVVEVLDLLGNLDITQVGLVTQNLVK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: A0A257XNV8_9PROT (Biopolymer transporter ExbD n=3 Tax=unclassified Hydrogenophilales TaxID=1798413 RepID=A0A257XNV8_9PROT)

HSP 1 Score: 170 bits (430), Expect = 4.830e-52
Identity = 89/132 (67.42%), Postives = 110/132 (83.33%), Query Frame = 1 
Query:   13 VKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            V+ ++EPYD IN+ PM+DL +VLL+IFIIMTTASVQGVKVNLPQAS   SLAKPKTKA+T+T +G ++LDTYPV++ EL ++LAS  A D ELPVVIKGD+ VQY  VM+VLDL G++GITQ+GLVTQ   K
Sbjct:    3 VQEDNEPYDQINVVPMLDLAYVLLVIFIIMTTASVQGVKVNLPQASDTPSLAKPKTKAITVTQDGQVYLDTYPVSMEELRTQLASARAADPELPVVIKGDTVVQYGKVMEVLDLLGQVGITQMGLVTQPAAK 134
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BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Match: G4T1X8_META2 (Biopolymer transport protein, ExbD/TolR family n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=G4T1X8_META2)

HSP 1 Score: 169 bits (427), Expect = 1.380e-51
Identity = 93/131 (70.99%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:   16 KGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQASSAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVVIKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK 408
            K E E YD IN+T M+DL +VLL++FIIMTTA+VQG+ VNLP+AS   SLAKPKTKA+TITA+G IFLDTYPVTL +LES L    A D ELPV+IKGD+TVQYQ V+DVL L GRI ITQIGLVTQ LVK
Sbjct:    4 KEELESYDDINVTSMLDLAYVLLIVFIIMTTAAVQGITVNLPKASDTPSLAKPKTKAITITADGTIFLDTYPVTLEQLESLLQQYRAADPELPVIIKGDATVQYQNVVDVLALMGRIDITQIGLVTQNLVK 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14177.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1TXZ0_9GAMM9.210e-5773.48Biopolymer transporter ExbD n=1 Tax=Gammaproteobac... [more]
A0A401JBZ6_9PROT1.070e-5571.43Biopolymer transport protein ExbD/TolR n=2 Tax=Pro... [more]
A0A7Y8SWK8_9PROT3.690e-5470.23Biopolymer transporter ExbD n=1 Tax=Hydrogenophila... [more]
A0A4R3YG59_9PROT1.020e-5369.17Outer membrane transport energization protein ExbD... [more]
A0A6L4YDD1_9RHOO2.060e-5368.42Biopolymer transport protein ExbD n=1 Tax=Rhodocyc... [more]
A0A0E9MB75_9PROT8.370e-5368.42Biopolymer transporter ExbD n=2 Tax=Betaproteobact... [more]
A0A352KKQ7_9GAMM1.190e-5266.17Biopolymer transporter ExbD n=1 Tax=Gammaproteobac... [more]
A0A3B8X0K0_9GAMM4.830e-5264.66Biopolymer transporter ExbD n=1 Tax=Gammaproteobac... [more]
A0A257XNV8_9PROT4.830e-5267.42Biopolymer transporter ExbD n=3 Tax=unclassified H... [more]
G4T1X8_META21.380e-5170.99Biopolymer transport protein, ExbD/TolR family n=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14177contigP-wetherbeei_contig14177:248..658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123393.KB891327_gene443
PFAMsExbD
Model size411
Max annot lvl119069|Hydrogenophilales
KEGG koko:K03559
KEGG TC1.A.30.2.1
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.85e-53
EggNOG OGsCOG0848@1|root,COG0848@2|Bacteria,1RKPI@1224|Proteobacteria,2VS5M@28216|Betaproteobacteria,1KT54@119069|Hydrogenophilales
DescriptionBiopolymer transport protein ExbD/TolR
Cds size411
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186011.6928499-CDS-P-wetherbeei_contig14177:247..6581683186011.6928499-CDS-P-wetherbeei_contig14177:247..658Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14177 248..658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14177.1.1prot_P-wetherbeei_contig14177.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14177 248..658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14177.1.1

>prot_P-wetherbeei_contig14177.1.1 ID=prot_P-wetherbeei_contig14177.1.1|Name=mRNA_P-wetherbeei_contig14177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MSAEVKGESEPYDTINITPMVDLTFVLLLIFIIMTTASVQGVKVNLPQAS
SAASLAKPKTKAVTITAEGNIFLDTYPVTLAELESRLASLYAIDTELPVV
IKGDSTVQYQLVMDVLDLTGRIGITQIGLVTQKLVK*
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mRNA from alignment at P-wetherbeei_contig14177:248..658-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14177.1.1 ID=mRNA_P-wetherbeei_contig14177.1.1|Name=mRNA_P-wetherbeei_contig14177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig14177:248..658- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGCGGAAGTCAAAGGCGAATCAGAACCCTATGACACCATCAACAT
CACGCCGATGGTCGACTTGACCTTCGTGTTGTTGTTGATCTTCATCATCA
TGACCACCGCCTCGGTGCAGGGCGTAAAGGTCAATCTGCCGCAGGCCAGC
AGCGCGGCGTCGCTGGCCAAACCCAAGACCAAGGCCGTCACCATTACCGC
CGAAGGCAATATCTTTCTCGACACCTATCCCGTCACTTTAGCGGAGCTCG
AAAGTCGGCTGGCCTCGCTCTACGCCATCGATACTGAGCTGCCGGTAGTC
ATCAAGGGCGATTCAACCGTGCAGTACCAGCTGGTGATGGATGTGCTCGA
TCTGACGGGGCGGATAGGCATCACGCAGATTGGTCTCGTTACACAGAAAT
TGGTCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14177:248..658-

>mRNA_P-wetherbeei_contig14177.1.1 ID=mRNA_P-wetherbeei_contig14177.1.1|Name=mRNA_P-wetherbeei_contig14177.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig14177:248..658- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGCGGAAGTCAAAGGCGAATCAGAACCCTATGACACCATCAACAT
CACGCCGATGGTCGACTTGACCTTCGTGTTGTTGTTGATCTTCATCATCA
TGACCACCGCCTCGGTGCAGGGCGTAAAGGTCAATCTGCCGCAGGCCAGC
AGCGCGGCGTCGCTGGCCAAACCCAAGACCAAGGCCGTCACCATTACCGC
CGAAGGCAATATCTTTCTCGACACCTATCCCGTCACTTTAGCGGAGCTCG
AAAGTCGGCTGGCCTCGCTCTACGCCATCGATACTGAGCTGCCGGTAGTC
ATCAAGGGCGATTCAACCGTGCAGTACCAGCTGGTGATGGATGTGCTCGA
TCTGACGGGGCGGATAGGCATCACGCAGATTGGTCTCGTTACACAGAAAT
TGGTCAAGTAA
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