mRNA_P-wetherbeei_contig14154.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14154.1.1
Unique NamemRNA_P-wetherbeei_contig14154.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14154.1.1 vs. uniprot
Match: A0A1V5BZC7_9FIRM (Endoglucanase n=4 Tax=Pelotomaculum TaxID=191373 RepID=A0A1V5BZC7_9FIRM)

HSP 1 Score: 51.2 bits (121), Expect = 7.590e-5
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  133 FLQTANIDYSGYSS----NLSGNSFAGTYDGGGYSISNVSVTASSGTWIGLFGNMSG-TVQNANFTGSM 324
            F+QTANID SGY+S      S   F G YDG GY+I N+++   +  +IGLFG +SG TV + + TG++
Sbjct:  575 FIQTANIDLSGYASWTPIGTSATPFTGIYDGKGYTIENLAIDRENEDFIGLFGKISGGTVDDLHITGAV 643
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14154.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1V5BZC7_9FIRM7.590e-546.38Endoglucanase n=4 Tax=Pelotomaculum TaxID=191373 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14154contigP-wetherbeei_contig14154:1189..1572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122917.KB899674_gene348
PFAMsBig_2,CarbopepD_reg_2,CarboxypepD_reg,Glug,He_PIG,SLH
Model size384
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000922
EggNOG OGsCOG2755@1|root,COG5492@1|root,COG2755@2|Bacteria,COG5492@2|Bacteria,1V8BC@1239|Firmicutes,4I1I4@91061|Bacilli,26TUH@186822|Paenibacillaceae
DescriptionCarboxypeptidase regulatory-like domain
Cds size384
COG categoryEN
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.9640627-CDS-P-wetherbeei_contig14154:1188..15721683186010.9640627-CDS-P-wetherbeei_contig14154:1188..1572Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14154 1189..1572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14154.1.1prot_P-wetherbeei_contig14154.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14154 1189..1572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14154.1.1

>prot_P-wetherbeei_contig14154.1.1 ID=prot_P-wetherbeei_contig14154.1.1|Name=mRNA_P-wetherbeei_contig14154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
MTSVTWTTSSGKYLVTDVNHFACIMAQGSGFSTTGAPSSYLTASFLQTAN
IDYSGYSSNLSGNSFAGTYDGGGYSISNVSVTASSGTWIGLFGNMSGTVQ
NANFTGSMTLALNSGQFNGLLSGSTGGT
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mRNA from alignment at P-wetherbeei_contig14154:1189..1572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14154.1.1 ID=mRNA_P-wetherbeei_contig14154.1.1|Name=mRNA_P-wetherbeei_contig14154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig14154:1189..1572+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCTGTTACATGGACCACATCAAGTGGAAAGTACTTGGTCACGGA
TGTCAATCACTTTGCATGTATTATGGCCCAAGGATCGGGTTTCAGTACCA
CTGGTGCACCATCCAGCTACCTCACAGCCTCCTTCCTGCAGACAGCAAAC
ATTGACTATTCTGGCTACAGTTCAAACCTCAGCGGGAATTCTTTTGCGGG
GACATATGATGGAGGTGGTTACAGTATCTCCAACGTATCCGTCACAGCAT
CTTCAGGAACATGGATTGGTCTTTTTGGGAACATGAGCGGGACGGTACAA
AACGCAAACTTTACGGGATCCATGACACTGGCATTGAACAGTGGTCAGTT
CAATGGGCTCTTGAGCGGATCAACGGGTGGGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14154:1189..1572+

>mRNA_P-wetherbeei_contig14154.1.1 ID=mRNA_P-wetherbeei_contig14154.1.1|Name=mRNA_P-wetherbeei_contig14154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig14154:1189..1572+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTCTGTTACATGGACCACATCAAGTGGAAAGTACTTGGTCACGGA
TGTCAATCACTTTGCATGTATTATGGCCCAAGGATCGGGTTTCAGTACCA
CTGGTGCACCATCCAGCTACCTCACAGCCTCCTTCCTGCAGACAGCAAAC
ATTGACTATTCTGGCTACAGTTCAAACCTCAGCGGGAATTCTTTTGCGGG
GACATATGATGGAGGTGGTTACAGTATCTCCAACGTATCCGTCACAGCAT
CTTCAGGAACATGGATTGGTCTTTTTGGGAACATGAGCGGGACGGTACAA
AACGCAAACTTTACGGGATCCATGACACTGGCATTGAACAGTGGTCAGTT
CAATGGGCTCTTGAGCGGATCAACGGGTGGGACG
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