mRNA_P-wetherbeei_contig14147.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14147.1.1
Unique NamemRNA_P-wetherbeei_contig14147.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14147.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14147contigP-wetherbeei_contig14147:832..1462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size631
Hectar predicted targeting categoryother localisation
Exons1
Cds size426
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.6227953-UTR-P-wetherbeei_contig14147:831..10141683186010.6227953-UTR-P-wetherbeei_contig14147:831..1014Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14147 832..1014 +
1683186010.6454349-UTR-P-wetherbeei_contig14147:1440..14621683186010.6454349-UTR-P-wetherbeei_contig14147:1440..1462Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14147 1441..1462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.635354-CDS-P-wetherbeei_contig14147:1014..14401683186010.635354-CDS-P-wetherbeei_contig14147:1014..1440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14147 1015..1440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14147.1.1prot_P-wetherbeei_contig14147.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14147 1015..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14147.1.1

>prot_P-wetherbeei_contig14147.1.1 ID=prot_P-wetherbeei_contig14147.1.1|Name=mRNA_P-wetherbeei_contig14147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
MESSMTSPERKTTTSPHHGLKLDFIPVPGVGAFESPQRGKKRRREGEEPQ
SDSPLSPRTKLRRDMASEEEELTEIYRKRSLSGDNLPPIDTVFKPIHSPK
STPSTPPAQLLAPIVIPASAAAAFKALAAVPPKSLNTKSLK*
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mRNA from alignment at P-wetherbeei_contig14147:832..1462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14147.1.1 ID=mRNA_P-wetherbeei_contig14147.1.1|Name=mRNA_P-wetherbeei_contig14147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=631bp|location=Sequence derived from alignment at P-wetherbeei_contig14147:832..1462+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTCTCCTCTTCCCAGTGATGTGCGTCCCTATAAAGTTGAAGGTTGGGA
TGATGTCAAACGCGGAAATCCCTCGAAGCAAAGCCGATCTTATTAACACC
ACTTAACGGCGGCTGACCCCACGGCTCTGCGAAAGCACCCCTAGGCAAAA
AGGGTGAGCAGCTTCAGAAGATCTGAAGGAGATATGGAAAGCTCGATGAC
GAGCCCGGAACGCAAGACGACGACAAGCCCCCACCATGGGTTGAAGCTGG
ACTTCATCCCAGTGCCAGGGGTAGGAGCGTTCGAGAGCCCCCAGCGTGGG
AAAAAGCGGCGAAGAGAAGGAGAAGAGCCCCAAAGCGACAGCCCCCTCAG
TCCGCGAACGAAACTCCGTCGCGATATGGCAAGCGAAGAGGAGGAGCTGA
CGGAGATTTATAGGAAAAGAAGCCTGAGCGGCGACAACTTGCCTCCAATA
GACACCGTGTTTAAACCAATCCATTCGCCCAAGTCGACGCCATCGACACC
TCCTGCCCAGCTACTGGCGCCAATAGTGATCCCAGCTTCGGCAGCGGCGG
CATTCAAGGCGCTTGCGGCGGTGCCGCCCAAGTCACTAAATACGAAAAGC
CTAAAGTGAAAAGAGAATTGACAATGTACCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14147:832..1462+

>mRNA_P-wetherbeei_contig14147.1.1 ID=mRNA_P-wetherbeei_contig14147.1.1|Name=mRNA_P-wetherbeei_contig14147.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig14147:832..1462+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAAGCTCGATGACGAGCCCGGAACGCAAGACGACGACAAGCCCCCA
CCATGGGTTGAAGCTGGACTTCATCCCAGTGCCAGGGGTAGGAGCGTTCG
AGAGCCCCCAGCGTGGGAAAAAGCGGCGAAGAGAAGGAGAAGAGCCCCAA
AGCGACAGCCCCCTCAGTCCGCGAACGAAACTCCGTCGCGATATGGCAAG
CGAAGAGGAGGAGCTGACGGAGATTTATAGGAAAAGAAGCCTGAGCGGCG
ACAACTTGCCTCCAATAGACACCGTGTTTAAACCAATCCATTCGCCCAAG
TCGACGCCATCGACACCTCCTGCCCAGCTACTGGCGCCAATAGTGATCCC
AGCTTCGGCAGCGGCGGCATTCAAGGCGCTTGCGGCGGTGCCGCCCAAGT
CACTAAATACGAAAAGCCTAAAGTGA
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