mRNA_P-wetherbeei_contig14127.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14127.3.1
Unique NamemRNA_P-wetherbeei_contig14127.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A836C920_9STRA (Gamma-tocopherol methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C920_9STRA)

HSP 1 Score: 166 bits (420), Expect = 2.730e-48
Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            +L++GIA FYD SSGLWE++WGEHMHHGYYE    P +L EH+ AQV MI++SL +AGV   +A +PKTGVD+GCGIGGSSRHIAR++GT M GITLSPKQ  RA +L+  AGL DKC FQ
Sbjct:   29 ELKDGIANFYDKSSGLWESIWGEHMHHGYYE--EQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQ 147
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A6H5LQU7_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LQU7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.920e-46
Identity = 80/121 (66.12%), Postives = 93/121 (76.86%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            +L+ GIA FYD SSG+WE MWGEHMHHGYY  G  P  +  HR AQ  MI +SL +AGVE+G A +PKTGVDIGCG+GGSSR I+R +GT MTGI+LSP Q  RA  LSEAAGL DKC+FQ
Sbjct:  110 ELKEGIANFYDKSSGIWEEMWGEHMHHGYYVQGVKPKNMEHHRAAQRFMIGRSLEWAGVEEGGA-APKTGVDIGCGVGGSSRAISRRYGTNMTGISLSPVQVERAKNLSEAAGLGDKCKFQ 229
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A2V0P4Y4_9CHLO (Gamma-tocopherol methyltransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P4Y4_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 6.020e-42
Identity = 73/120 (60.83%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:    4 LRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            L+ GIA+FYD SSGLWE +WGEHMHHGYY  G  P +   ++ AQ++MIE++L +AG+E+G  + PKT VD+GCGIGGSSRHIAR++G    GITLSP Q  RA  +SE AGL DKC FQ
Sbjct:   59 LKQGIAQFYDESSGLWEEVWGEHMHHGYYPAGGPPKS---NQQAQIDMIEETLKWAGMEEG--RPPKTMVDVGCGIGGSSRHIARKYGCTAKGITLSPVQAARANAISEKAGLGDKCSFQ 173
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: Q2XV91_HELAN (Gamma-tocopherol methyltransferase n=4 Tax=Asteraceae TaxID=4210 RepID=Q2XV91_HELAN)

HSP 1 Score: 147 bits (370), Expect = 5.160e-41
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            KL+ GIA+FYD SSG+WEN+WGEHMHHGYY   +    L++HR AQ+ MIEQ+L +A V     K PKT VD+GCGIGGSSR++AR++G    GITLSP Q  RA  L+ A GL DK  FQ
Sbjct:   28 KLKKGIAEFYDESSGMWENIWGEHMHHGYYNSDDVVE-LSDHRSAQIRMIEQALTFASVSDDPEKKPKTIVDVGCGIGGSSRYLARKYGAECHGITLSPVQAERANALAAAQGLADKVSFQ 147
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: I1LP33_SOYBN (Methyltransf_11 domain-containing protein n=8 Tax=Glycine subgen. Soja TaxID=1462606 RepID=I1LP33_SOYBN)

HSP 1 Score: 145 bits (367), Expect = 5.860e-41
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            KL+ GIA+FYD SSGLWEN+WG+HMHHG+Y+  +  S L++HRLAQ+ MI++SL +A V +  +K PK+ VD+GCGIGGSSR++A++FG    GITLSP Q  RA  L+ A GL DK  F+
Sbjct:   10 KLQKGIAEFYDESSGLWENIWGDHMHHGFYDPDSTVS-LSDHRLAQIRMIQESLRFASVSEERSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANALAAAQGLDDKVSFE 129
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: Q2XV92_HELAN (Gamma-tocopherol methyltransferase n=3 Tax=Helianthus annuus TaxID=4232 RepID=Q2XV92_HELAN)

HSP 1 Score: 146 bits (369), Expect = 7.280e-41
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            KL+ GIA+FYD SSG+WEN+WGEHMHHGYY   +    L++HR AQ+ MIEQ+L +A V     K PKT VD+GCGIGGSSR++AR++G    GITLSP Q  RA  L+ A GL DK  FQ
Sbjct:   28 KLKKGIAEFYDESSGMWENIWGEHMHHGYYNSDDVVE-LSDHRSAQIRMIEQALTFASVSDDLEKKPKTIVDVGCGIGGSSRYLARKYGAECHGITLSPVQAERANALAAAQGLADKVSFQ 147
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A0D2MKE8_9CHLO (Methyltransferase type 11 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MKE8_9CHLO)

HSP 1 Score: 147 bits (370), Expect = 8.580e-41
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1 
Query:    4 LRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            L+ GIA FYD SSGLWE +WGEHMHHGYY  G  P +   ++ AQ++MIE++L++AGV+      PKT VD+GCGIGGSSRHIAR++G    GITLSP Q  RA  +SE AGL DKC FQ
Sbjct:   52 LKKGIATFYDESSGLWEEVWGEHMHHGYYPAGGAPKS---NQQAQIDMIEETLSWAGVDT----PPKTMVDVGCGIGGSSRHIARKYGCTAKGITLSPVQAARANAISEKAGLGDKCSFQ 164
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: Q56GA2_SOYBN (Gamma-tocopherol methyltransferase n=7 Tax=Glycine subgen. Soja TaxID=1462606 RepID=Q56GA2_SOYBN)

HSP 1 Score: 145 bits (366), Expect = 4.600e-40
Identity = 69/121 (57.02%), Postives = 91/121 (75.21%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            KL+ GIA+FYD SSGLWEN+WG+HMHHG+Y+  +  S L++HR AQ+ MI++SL +A V +  +K PK+ VD+GCGIGGSSR++A++FG    GITLSP Q  RA  L+ A GL DK  FQ
Sbjct:   64 KLQKGIAEFYDESSGLWENIWGDHMHHGFYDSDSTVS-LSDHRAAQIRMIQESLRFASVSEERSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANALAAAQGLADKVSFQ 183
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A6L2JSH1_TANCI (Gamma-tocopherol methyltransferase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JSH1_TANCI)

HSP 1 Score: 142 bits (357), Expect = 9.560e-40
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            KL+ GIA+FYD SSG+WEN+WGEHMHHG+Y+ G     +++HR AQ+ MIEQSL +A V +   K PK+ VD+GCGIGGS+R+++R++G    GITLSP Q  RA  L+ A GL +K  FQ
Sbjct:   55 KLKKGIAEFYDESSGIWENIWGEHMHHGFYQPGAVVE-ISDHRSAQIRMIEQSLIFASVPEDQLKKPKSIVDVGCGIGGSARYLSRKYGAECCGITLSPVQAERAQALAAAEGLANKVSFQ 174
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BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Match: A0A2J6M3J9_LACSA (Methyltransf_11 domain-containing protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6M3J9_LACSA)

HSP 1 Score: 143 bits (361), Expect = 1.090e-39
Identity = 69/121 (57.02%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMIEQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPKQQNRAGQLSEAAGLKDKCQFQ 363
            +L+ GIA+FYD SSG+WEN+WGEHMHHG+Y+  +    L++HR AQ+ MIEQSL +A V     K PKT VD+GCGIGGSSR++AR++G    GITLSP Q  RA  L+   GL DK  FQ
Sbjct:   26 QLKKGIAEFYDESSGMWENIWGEHMHHGFYDT-DAVVELSDHRAAQIRMIEQSLLFASVPDDPVKKPKTIVDVGCGIGGSSRYLARKYGAECHGITLSPVQAERAQALAATQGLADKVSFQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14127.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C920_9STRA2.730e-4866.12Gamma-tocopherol methyltransferase n=1 Tax=Tribone... [more]
A0A6H5LQU7_9PHAE6.920e-4666.12Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A2V0P4Y4_9CHLO6.020e-4260.83Gamma-tocopherol methyltransferase n=1 Tax=Raphido... [more]
Q2XV91_HELAN5.160e-4158.68Gamma-tocopherol methyltransferase n=4 Tax=Asterac... [more]
I1LP33_SOYBN5.860e-4157.02Methyltransf_11 domain-containing protein n=8 Tax=... [more]
Q2XV92_HELAN7.280e-4158.68Gamma-tocopherol methyltransferase n=3 Tax=Heliant... [more]
A0A0D2MKE8_9CHLO8.580e-4160.00Methyltransferase type 11 n=1 Tax=Monoraphidium ne... [more]
Q56GA2_SOYBN4.600e-4057.02Gamma-tocopherol methyltransferase n=7 Tax=Glycine... [more]
A0A6L2JSH1_TANCI9.560e-4055.37Gamma-tocopherol methyltransferase n=1 Tax=Tanacet... [more]
A0A2J6M3J9_LACSA1.090e-3957.02Methyltransf_11 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14127contigP-wetherbeei_contig14127:1078..1748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHY0
Preferred nameTMT
PFAMsCMAS,Methyltransf_11
Model size363
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC01662
KEGG koko:K05928
KEGG ReactionR07236,R07504,R10491,R10492
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00112
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0016740,GO:0016741,GO:0018130,GO:0032259,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050342,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Exons3
Evalue2.89e-47
EggNOG OGsCOG0500@1|root,KOG1269@2759|Eukaryota
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.1
EC2.1.1.95
Descriptionsterol 24-C-methyltransferase activity
Cds size363
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.0321677-CDS-P-wetherbeei_contig14127:1077..12051683186010.0321677-CDS-P-wetherbeei_contig14127:1077..1205Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14127 1078..1205 +
1683186010.0410984-CDS-P-wetherbeei_contig14127:1384..14391683186010.0410984-CDS-P-wetherbeei_contig14127:1384..1439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14127 1385..1439 +
1683186010.0483358-CDS-P-wetherbeei_contig14127:1568..17481683186010.0483358-CDS-P-wetherbeei_contig14127:1568..1748Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14127 1569..1748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14127.3.1prot_P-wetherbeei_contig14127.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14127 1078..1748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14127.3.1

>prot_P-wetherbeei_contig14127.3.1 ID=prot_P-wetherbeei_contig14127.3.1|Name=mRNA_P-wetherbeei_contig14127.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
KLRNGIAKFYDASSGLWENMWGEHMHHGYYELGNCPSTLAEHRLAQVEMI
EQSLAYAGVEKGSAKSPKTGVDIGCGIGGSSRHIAREFGTAMTGITLSPK
QQNRAGQLSEAAGLKDKCQFQ
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mRNA from alignment at P-wetherbeei_contig14127:1078..1748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14127.3.1 ID=mRNA_P-wetherbeei_contig14127.3.1|Name=mRNA_P-wetherbeei_contig14127.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=671bp|location=Sequence derived from alignment at P-wetherbeei_contig14127:1078..1748+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTTAGAAACGGGATTGCGAAATTCTACGATGCCAGCTCGGGTCTGTG
GGAGAACATGTGGGGAGAGCACATGCATCATGGGTACTATGAGCTTGGAA
ACTGCCCGAGCACGTTAGCCGAACATCGGTAAGTGAGCTTTAACTTTGGC
AGCTCTCGCCTGAATAATCCCACTACGCCACTACTGGCATTCATTGAGAA
ATTCAAAACCTGAACGGCGAGGTTAAATGTTATTATTCTCGTGTCGCTGA
TACTCCGCCACATCCCGCCGCCGCCGCACCGCCCACACAACGGTGGTGAC
TGGGTAGACTCGCGCAGGTGGAGATGATTGAGCAGAGCCTGGCATATGCC
GGTGTTGAGAAGGTGAGCACTTCCGTCGTGAGTGCAGCAAAACCTAAGTT
TTCCTCTGTCGAAAGCGGCGGAGCTGCTATTCTGCAAACAGAAGCAGCCA
CAAGTGACATCGGAAACCCGTGCGCCTCTTTGCCGTCACAGGGCAGCGCA
AAATCGCCCAAAACCGGTGTAGACATCGGCTGCGGCATTGGCGGATCTTC
GCGCCACATCGCGCGCGAGTTTGGTACCGCAATGACCGGAATCACTTTGA
GCCCCAAGCAGCAAAACCGCGCCGGGCAGCTCTCCGAGGCTGCGGGATTG
AAGGACAAATGCCAGTTTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14127:1078..1748+

>mRNA_P-wetherbeei_contig14127.3.1 ID=mRNA_P-wetherbeei_contig14127.3.1|Name=mRNA_P-wetherbeei_contig14127.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14127:1078..1748+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCTTAGAAACGGGATTGCGAAATTCTACGATGCCAGCTCGGGTCTGTG
GGAGAACATGTGGGGAGAGCACATGCATCATGGGTACTATGAGCTTGGAA
ACTGCCCGAGCACGTTAGCCGAACATCGACTCGCGCAGGTGGAGATGATT
GAGCAGAGCCTGGCATATGCCGGTGTTGAGAAGGGCAGCGCAAAATCGCC
CAAAACCGGTGTAGACATCGGCTGCGGCATTGGCGGATCTTCGCGCCACA
TCGCGCGCGAGTTTGGTACCGCAATGACCGGAATCACTTTGAGCCCCAAG
CAGCAAAACCGCGCCGGGCAGCTCTCCGAGGCTGCGGGATTGAAGGACAA
ATGCCAGTTTCAG
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