mRNA_P-wetherbeei_contig14127.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14127.1.1
Unique NamemRNA_P-wetherbeei_contig14127.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14127.1.1 vs. uniprot
Match: A0A835Z886_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z886_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.530e-20
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  124 VRAAKDRYAAQRAGRNAYGPPYLADYGGDLIEMSRALEPDVEEVHRLLLNKGDPNIGDPAEQDNTAIHFAARYGHLALLQMFKLAGGMMDKANALGVTPLSYTSMFRL 447
            V   KDRY   +     YGPPY  DY G+L E      P+V+E+H +L    DPN    A+   TA+H+AARYG + +L M +LAGG ++ AN LG+TPLSY   F L
Sbjct:   32 VTKLKDRYRLYKHA--GYGPPYSDDYDGNLPEECNTFLPNVQEIHGMLKRGADPNARVKADNGCTAVHYAARYGLVEVLTMLQLAGGDVNTANTLGMTPLSYACRFPL 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14127.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z886_9STRA5.530e-2045.37Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14127contigP-wetherbeei_contig14127:42..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHY1
PFAMsAnk,Ank_2,Ank_3,Ank_4,Ank_5
Model size486
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.47e-15
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.2
Descriptionspectrin binding
Cds size483
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186010.0016997-CDS-P-wetherbeei_contig14127:42..2481683186010.0016997-CDS-P-wetherbeei_contig14127:42..248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14127 43..248 -
1683186010.0099401-CDS-P-wetherbeei_contig14127:376..6531683186010.0099401-CDS-P-wetherbeei_contig14127:376..653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14127 377..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14127.1.1prot_P-wetherbeei_contig14127.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14127 43..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14127.1.1

>prot_P-wetherbeei_contig14127.1.1 ID=prot_P-wetherbeei_contig14127.1.1|Name=mRNA_P-wetherbeei_contig14127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
EEEVIVLTRTEKMPEEASYSSSSDDEEVRRQESKKNAFLDRVRAAKDRYA
AQRAGRNAYGPPYLADYGGDLIEMSRALEPDVEEVHRLLLNKGDPNIGDP
AEQDNTAIHFAARYGHLALLQMFKLAGGMMDKANALGVTPLSYTSMFRLG
LDGVSSWEDKQ
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mRNA from alignment at P-wetherbeei_contig14127:42..653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14127.1.1 ID=mRNA_P-wetherbeei_contig14127.1.1|Name=mRNA_P-wetherbeei_contig14127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=612bp|location=Sequence derived from alignment at P-wetherbeei_contig14127:42..653- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGAAGTGATTGTACTAACACGCACCGAAAAAATGCCGGAGGAGGC
GTCTTATTCATCTTCGTCGGACGACGAAGAGGTGAGGCGCCAAGAGTCCA
AGAAAAACGCCTTCTTGGACCGCGTCAGGGCCGCCAAGGATCGGTATGCG
GCTCAACGAGCTGGTCGAAACGCTTACGGACCCCCTTACCTCGCCGACTA
CGGCGGCGACCTCATCGAGATGAGCCGAGCTTTGGAACCTGATGTCGAGG
AGGTCCATCGGCTGCTCCTCAATAAGGGTACGCGATTCCTGGCGTTAGGG
AGGCGGGAGATCTTATCCTGAGTTGGAATATCCGTGGCATAAGCGATTGT
TGAGCGCTTTGTAAAGAACTCTGCCTGCTTCCTCCCCCTTTATCAACATC
AAAAGGCGATCCCAACATCGGCGATCCTGCGGAGCAAGACAACACCGCGA
TTCATTTCGCAGCGCGGTATGGGCACCTCGCTCTACTGCAGATGTTCAAG
CTTGCTGGAGGCATGATGGACAAAGCCAATGCACTCGGCGTCACGCCTCT
CAGCTACACGAGCATGTTCCGCCTCGGCCTCGACGGTGTCAGTTCTTGGG
AGGACAAACAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14127:42..653-

>mRNA_P-wetherbeei_contig14127.1.1 ID=mRNA_P-wetherbeei_contig14127.1.1|Name=mRNA_P-wetherbeei_contig14127.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig14127:42..653- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAGGAAGTGATTGTACTAACACGCACCGAAAAAATGCCGGAGGAGGC
GTCTTATTCATCTTCGTCGGACGACGAAGAGGTGAGGCGCCAAGAGTCCA
AGAAAAACGCCTTCTTGGACCGCGTCAGGGCCGCCAAGGATCGGTATGCG
GCTCAACGAGCTGGTCGAAACGCTTACGGACCCCCTTACCTCGCCGACTA
CGGCGGCGACCTCATCGAGATGAGCCGAGCTTTGGAACCTGATGTCGAGG
AGGTCCATCGGCTGCTCCTCAATAAGGGCGATCCCAACATCGGCGATCCT
GCGGAGCAAGACAACACCGCGATTCATTTCGCAGCGCGGTATGGGCACCT
CGCTCTACTGCAGATGTTCAAGCTTGCTGGAGGCATGATGGACAAAGCCA
ATGCACTCGGCGTCACGCCTCTCAGCTACACGAGCATGTTCCGCCTCGGC
CTCGACGGTGTCAGTTCTTGGGAGGACAAACAG
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