mRNA_P-wetherbeei_contig14114.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14114.2.1
Unique NamemRNA_P-wetherbeei_contig14114.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14114.2.1 vs. uniprot
Match: A0A835ZJK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJK4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.390e-9
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 RGDKAAKPRRWPNVGRDTTAAGLLQTLQRHVAPGSAVYVATNEPDPNAFFAPLRQVY 171
            RGDK +  + +PN+  +T+  G+L+T++ HV  GS +Y+ATNEPDP A+F PLR+ Y
Sbjct:  142 RGDKLSYTK-YPNLNYETSPEGILKTIEPHVPHGSVLYLATNEPDPVAYFEPLRKHY 197
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BLAST of mRNA_P-wetherbeei_contig14114.2.1 vs. uniprot
Match: A0A835ZIS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.010e-9
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 RGDKAAKPR-RWPNVGRDTTAAGLLQTLQRHVAPGSAVYVATNEPDPNAFFAPLRQVY 171
            RGDK      R+PN+  +T+  G+ Q L  HV  G+ VY+ATNEP+P  FFAPL Q+Y
Sbjct:  284 RGDKITDMHDRYPNLDYETSPEGIAQRLSPHVPGGATVYIATNEPNPQQFFAPLAQMY 341
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BLAST of mRNA_P-wetherbeei_contig14114.2.1 vs. uniprot
Match: A0A835ZNY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNY4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.230e-7
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 RGDKAA---KPRRWPNVGRDTTAAGLLQTLQRHVAPGSAVYVATNEPDPNAFFAPLRQVY 171
            RGDK        R+PN+  +T+  G++ T++  V+ GS +Y+ATN+ DP AFFAPL+  Y
Sbjct:  396 RGDKLTIEVDKERYPNLDYETSPEGIMATIEPFVSHGSVLYIATNQQDPVAFFAPLQARY 455
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14114.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZJK4_9STRA1.390e-949.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIS6_9STRA4.010e-950.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZNY4_9STRA8.230e-743.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14114contigP-wetherbeei_contig14114:941..1111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog38727.Pavir.J34619.1.p
PFAMsO-FucT
Model size171
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.16e-09
EggNOG OGs28P4T@1|root,2QVRK@2759|Eukaryota,37M3Y@33090|Viridiplantae,3GB9J@35493|Streptophyta,3KPB8@4447|Liliopsida,3I5KI@38820|Poales
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.7173176-CDS-P-wetherbeei_contig14114:940..11111683186009.7173176-CDS-P-wetherbeei_contig14114:940..1111Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14114 941..1111 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14114.2.1prot_P-wetherbeei_contig14114.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14114 941..1111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14114.2.1

>prot_P-wetherbeei_contig14114.2.1 ID=prot_P-wetherbeei_contig14114.2.1|Name=mRNA_P-wetherbeei_contig14114.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
RGDKAAKPRRWPNVGRDTTAAGLLQTLQRHVAPGSAVYVATNEPDPNAFF
APLRQVY
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mRNA from alignment at P-wetherbeei_contig14114:941..1111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14114.2.1 ID=mRNA_P-wetherbeei_contig14114.2.1|Name=mRNA_P-wetherbeei_contig14114.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig14114:941..1111+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGCGACAAGGCGGCCAAGCCCCGGCGGTGGCCGAACGTCGGCCGGGA
CACGACCGCGGCTGGGCTGCTGCAGACGCTGCAGAGGCACGTGGCGCCGG
GGTCGGCGGTCTACGTCGCCACCAACGAGCCCGACCCCAACGCTTTCTTC
GCACCGCTGCGCCAGGTGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14114:941..1111+

>mRNA_P-wetherbeei_contig14114.2.1 ID=mRNA_P-wetherbeei_contig14114.2.1|Name=mRNA_P-wetherbeei_contig14114.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=171bp|location=Sequence derived from alignment at P-wetherbeei_contig14114:941..1111+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGCGACAAGGCGGCCAAGCCCCGGCGGTGGCCGAACGTCGGCCGGGA
CACGACCGCGGCTGGGCTGCTGCAGACGCTGCAGAGGCACGTGGCGCCGG
GGTCGGCGGTCTACGTCGCCACCAACGAGCCCGACCCCAACGCTTTCTTC
GCACCGCTGCGCCAGGTGTAT
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