mRNA_P-wetherbeei_contig1411.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1411.4.1
Unique NamemRNA_P-wetherbeei_contig1411.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A836CLX4_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.830e-32
Identity = 85/191 (44.50%), Postives = 106/191 (55.50%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQ---GEHFFGGGDSFVFSSLGWGG-------------------GRGGASPLGNT-CFMFCD-HRGIGMGGG-PGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFV 498
            +LS   V ALA  LP       W+LL+SLD HG++L TLLA CA  +PTL+A+AD  G VFGGFA GA WSR     G  F+G G+SF+FS L   G                     G  +   +  CF++ D  RG GMGGG  GGEF  ++DD+L  GTSG C TF N  L+S   F  + LE+W FV
Sbjct: 1045 LLSPEMVTALAMRLPRAQAGSDWRLLFSLDRHGSALATLLALCADAQPTLVAIADARGTVFGGFAAGAAWSRPSAHGGPGFYGSGESFLFSFLRCEGPTAVRIWRWNPPASAXXXXXXGAVAHRDSADCFLYSDPSRGFGMGGGGAGGEFGWYVDDSLSSGTSGSCGTFRNDCLSSEREFAVMGLEVWAFV 1235          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A024GE06_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GE06_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.260e-26
Identity = 69/171 (40.35%), Postives = 94/171 (54.97%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGAS------PLGNTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGF 495
            +L+L  V  L + LP T    +W L+YS D  G+SL+TLL     + PTLL + D    VFGGFA+   W R    H++G G+SF+FS       + G S         N  FMFC    + MGGG  G F +FLD+ L  GT+G C+TFG+  LA +  F C+ +E+W F
Sbjct:  765 ILTLDHVARLDQHLPITTQLCNWYLVYSTDRDGSSLDTLLIMSESKYPTLLVVKDANDNVFGGFASDV-WRRSS--HYYGNGESFLFSF------QAGLSLTVYPWSRRNNYFMFCSEEALMMGGG--GNFGLFLDNDLHCGTTGACETFGSLPLAPTQDFYCMQVELWAF 924          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A6A4EWR5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EWR5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.410e-25
Identity = 67/177 (37.85%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLG----------NTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVN 501
            +L+L  +  +  +LP T     W  +YS++A+G+SL TLL     + PTLL + D  G VFGGFA+   W R    H++G G+SF+FS          +S  G          N+ FM C    + MGGG  G F +FLD  L RG+SG C+T+ +  L +S  F CV +E+WGF  
Sbjct:  886 ILTLEHIAYIDHALPITSQLCRWFRIYSIEANGSSLETLLILAQKQSPTLLVVKDADGNVFGGFASDE-WHRAF--HYYGTGESFLFSFAN-------SSTAGGFVKYQWSRKNSYFMLCSDESLIMGGG--GNFGLFLDSDLSRGSSGACETYNSPPLTTSQDFSCVHVELWGFTT 1050          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A5D6XY19_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY19_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.050e-25
Identity = 70/180 (38.89%), Postives = 97/180 (53.89%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFS--------SLGWGGGRGGASPLG----NTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVNA 504
            +L+L  V  L  ++P T     W LLYS +A+G+SL+TLL    G+ PTLL + D  G VFGGFA+   W R     ++G G++F+F+            GGG GG +       N  F  C    + MGGG  G F +FLD  L  G++G C+TF +  L SS  F CV +E+WGF  +
Sbjct:  937 ILTLEHVARLDSAVPITCQLCRWCLLYSSEANGSSLHTLLMLSRGQSPTLLVIKDDLGHVFGGFASDE-WRRAT--QYYGNGETFLFTFGHRGQGPHSSSGGGTGGFTKFPWSRRNNYFQLCSEESLVMGGG--GSFGLFLDYDLSSGSTGACETFSSRPLVSSQEFSCVHVEVWGFTTS 1111          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A0N7L380_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L380_PLAHL)

HSP 1 Score: 110 bits (274), Expect = 8.180e-25
Identity = 66/170 (38.82%), Postives = 91/170 (53.53%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGAS---PLGNTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVN 501
            +L+   +  +  +LP T     W  +YS++A+G+SL TLL     + PTLL + D  G VFGGFA+   W R    +++G G+SF+FS        G         N+ FM C    + MGGG  G F +FLD  L RGTSG C+TF +  L  S  F CV +E+WGF  
Sbjct:  877 ILTADHIACIDHALPITTQLCRWYKIYSVEANGSSLETLLTLAKKQSPTLLVVKDAKGNVFGGFASDE-WHRAF--NYYGTGESFLFSFANTSAAGGFVKYQWSRKNSYFMLCSDESLIMGGG--GNFGLFLDSDLSRGTSGACETFNSPPLTVSQEFSCVQVELWGFTT 1041          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A225X5E2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X5E2_9STRA)

HSP 1 Score: 110 bits (274), Expect = 8.180e-25
Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLG------------NTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVN 501
            +L+L  +  +  +LP T     W  +YS++A+G+SL TLL     + PTLL + D  G VFGGFA+   W      H++G G+SF+FS          A P              N+ FM C    + MGGG  G F +FLD  L  GTSG C+TF +  L +S  F CV +E+WGF +
Sbjct:  880 ILTLEHIAFIDHALPITTQLCRWYRIYSVEANGSSLETLLILAKKQSPTLLVVKDAKGNVFGGFASDE-WHHAF--HYYGTGESFLFSF---------ADPSAAGGFVKYQWSRKNSYFMLCSEESLIMGGG--GNFGLFLDSDLSAGTSGACETFNSPPLTTSQEFSCVQVELWGFTS 1044          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: D0MQX0_PHYIT (Uncharacterized protein n=56 Tax=Phytophthora TaxID=4783 RepID=D0MQX0_PHYIT)

HSP 1 Score: 109 bits (273), Expect = 1.110e-24
Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLG------------NTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVN 501
            +L +  +  +  +LP T     W  +YS++A+G+SL TLL     + PTLL + D  G VFGG+A+   W      H++G G+SF+FS          ASP              N+ FM C    + MGGG  G F +FLD  L RGTSG C+TF +  L +S  F CV +E+WGF  
Sbjct:  807 ILEIEHLAYIDHALPITSQLCRWYRIYSVEANGSSLETLLILARKQSPTLLVVKDAQGNVFGGYASDE-WHHAF--HYYGTGESFLFSF---------ASPSAAGGFVKYQWSRKNSYFMLCSDESLIMGGG--GNFGLFLDSDLSRGTSGACETFNSPPLTTSQEFSCVQVELWGFTT 971          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A7S1XQU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQU5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.140e-23
Identity = 70/168 (41.67%), Postives = 93/168 (55.36%), Query Frame = 1
Query:    1 VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGR---EPTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLGNTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARL--ASSSPFECVALEMW 489
            +L  P +  L  +LP+ L    W L YS+  HGASL  L ARC  R    P++LA+AD  GAVFG +AT A W R++G  ++GGG +FVFS  G  G +   +   + C+  CD   I +GGG G   AI +D  L  G  G   TFGN  L  A+   F C+ LE+W
Sbjct:  174 ILLAPHLAELDAALPENLRGGSWALRYSMKRHGASLAALYARCGARGDDAPSVLAIADDEGAVFGAYATHA-W-RDRGAEWYGGGGTFVFSFAGGEGLKVFGATGADECYQRCDAGTICVGGGDG---AIRVDAELLHGRCGASPTFGNGVLTGAAEPSFRCLRLEVW 336          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A1U8AGM8_NELNU (nuclear receptor coactivator 7-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AGM8_NELNU)

HSP 1 Score: 98.6 bits (244), Expect = 3.040e-21
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   37 SLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGRE-PTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLGNTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVNA 504
            SLP+ +    W LLYS+  HG SL TL+ + A    P LL + D  GAVFGG     P      + + G   +FVF+++ +G  R   +   N  F  C    + +GGG  G FA+ LD  L RGTSGPC+TFGN  LA S  FE   +E+WGF ++
Sbjct:  228 SLPNIVKGCQWALLYSMTKHGLSLRTLIRKSADLPGPCLLIVGDMQGAVFGGLLE-CPLKPTTTKKYQGTNQTFVFTTI-YGQPRLFRATGANRYFYLCSDDLLALGGG--GNFALCLDGDLLRGTSGPCETFGNLCLAHSPEFELKNVELWGFTHS 380          
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Match: A0A7J7CRI3_TRIWF (TLDc domain-containing protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CRI3_TRIWF)

HSP 1 Score: 96.7 bits (239), Expect = 8.250e-21
Identity = 67/158 (42.41%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   37 SLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGRE-PTLLALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGASPLG-NTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLASSSPFECVALEMWGFVNA 504
            SLP+ +  R W LLYS   HG SL TL  + A    P LL   D  GAVFGG     P        + G   +FVF+++ +G  R    P G N  +  C +  + +GGG  G FA+ LD  L RGTSGPC+TFGN  LA S  FE   +E+WGF +A
Sbjct:  176 SLPNIVMGRRWVLLYSTSKHGISLRTLTRKSADLPGPCLLIAGDMRGAVFGGLLE-CPLKPTAKRKYQGTHQTFVFTTI-YGAPRI-FRPTGVNRYYYLCLNDLLALGGG--GNFALCLDGDLLRGTSGPCETFGNLCLAHSEEFELKNVELWGFAHA 328          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1411.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CLX4_9STRA1.830e-3244.50TLD-domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024GE06_9STRA9.260e-2640.35Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A6A4EWR5_9STRA4.410e-2537.85Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A5D6XY19_9STRA6.050e-2538.89Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0N7L380_PLAHL8.180e-2538.82Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A225X5E2_9STRA8.180e-2537.43Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
D0MQX0_PHYIT1.110e-2437.43Uncharacterized protein n=56 Tax=Phytophthora TaxI... [more]
A0A7S1XQU5_9STRA3.140e-2341.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1U8AGM8_NELNU3.040e-2140.76nuclear receptor coactivator 7-like n=1 Tax=Nelumb... [more]
A0A7J7CRI3_TRIWF8.250e-2142.41TLDc domain-containing protein n=1 Tax=Tripterygiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1411contigP-wetherbeei_contig1411:6315..6896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog36331.EPrPI00000018934
PFAMsELMO_CED12,RUN,RhoGAP,TLD
Model size510
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.45e-30
EggNOG OGsCOG5142@1|root,KOG4370@1|root,KOG2372@2759|Eukaryota,KOG4370@2759|Eukaryota,1MFDS@121069|Pythiales
DescriptionSource PGD
Cds size510
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.5099404-CDS-P-wetherbeei_contig1411:6314..65541683186009.5099404-CDS-P-wetherbeei_contig1411:6314..6554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1411 6315..6554 -
1683186009.5200527-CDS-P-wetherbeei_contig1411:6626..68961683186009.5200527-CDS-P-wetherbeei_contig1411:6626..6896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1411 6627..6896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1411.4.1prot_P-wetherbeei_contig1411.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1411 6315..6896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1411.4.1

>prot_P-wetherbeei_contig1411.4.1 ID=prot_P-wetherbeei_contig1411.4.1|Name=mRNA_P-wetherbeei_contig1411.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
VLSLPQVHALARSLPDTLCTRHWQLLYSLDAHGASLNTLLARCAGREPTL
LALADRGGAVFGGFATGAPWSREQGEHFFGGGDSFVFSSLGWGGGRGGAS
PLGNTCFMFCDHRGIGMGGGPGGEFAIFLDDALCRGTSGPCQTFGNARLA
SSSPFECVALEMWGFVNAV*
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mRNA from alignment at P-wetherbeei_contig1411:6315..6896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1411.4.1 ID=mRNA_P-wetherbeei_contig1411.4.1|Name=mRNA_P-wetherbeei_contig1411.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig1411:6315..6896- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTCGTTGCCGCAGGTGCACGCTTTGGCGAGATCCCTGCCGGACAC GCTCTGCACTCGGCACTGGCAGCTGCTCTACAGCCTCGACGCTCACGGCG CGTCGCTCAACACGCTGTTGGCGCGCTGCGCGGGCCGCGAGCCGACGCTG CTGGCGCTGGCCGACCGTGGTGGCGCCGTATTCGGCGGGTTCGCCACGGG GGCGCCGTGGTCGCGCGAGCAGGGAGAGCATTTCTTTGGTGGCGGCGACA GCTTCGTCTTTTCGTCGCTTGTTCAGTCTTCGGGGGGAGGGCTGGCAGCA TCGGCGGCGGGTGGACCGCCGCTCGCGGTGTACCGCTGGCAGGGGTGGGG GGGCGGTCGGGGCGGGGCATCGCCGTTGGGCAACACATGCTTCATGTTCT GCGACCATCGTGGCATCGGAATGGGCGGCGGCCCGGGCGGTGAGTTTGCA ATCTTTCTGGACGACGCGCTCTGCCGCGGCACCAGCGGGCCGTGCCAGAC GTTCGGCAACGCCCGCCTGGCGTCCTCCAGCCCGTTCGAGTGCGTGGCTC TCGAAATGTGGGGATTTGTAAATGCTGTATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1411:6315..6896-

>mRNA_P-wetherbeei_contig1411.4.1 ID=mRNA_P-wetherbeei_contig1411.4.1|Name=mRNA_P-wetherbeei_contig1411.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig1411:6315..6896- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTCGTTGCCGCAGGTGCACGCTTTGGCGAGATCCCTGCCGGACAC
GCTCTGCACTCGGCACTGGCAGCTGCTCTACAGCCTCGACGCTCACGGCG
CGTCGCTCAACACGCTGTTGGCGCGCTGCGCGGGCCGCGAGCCGACGCTG
CTGGCGCTGGCCGACCGTGGTGGCGCCGTATTCGGCGGGTTCGCCACGGG
GGCGCCGTGGTCGCGCGAGCAGGGAGAGCATTTCTTTGGTGGCGGCGACA
GCTTCGTCTTTTCGTCGCTTGGGTGGGGGGGCGGTCGGGGCGGGGCATCG
CCGTTGGGCAACACATGCTTCATGTTCTGCGACCATCGTGGCATCGGAAT
GGGCGGCGGCCCGGGCGGTGAGTTTGCAATCTTTCTGGACGACGCGCTCT
GCCGCGGCACCAGCGGGCCGTGCCAGACGTTCGGCAACGCCCGCCTGGCG
TCCTCCAGCCCGTTCGAGTGCGTGGCTCTCGAAATGTGGGGATTTGTAAA
TGCTGTATAG
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