mRNA_P-wetherbeei_contig14105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14105.1.1
Unique NamemRNA_P-wetherbeei_contig14105.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14105.1.1 vs. uniprot
Match: D7FX47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX47_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.200e-7
Identity = 24/41 (58.54%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 RFDRFILQYHIRQFGTRRVARRHLHQLCYTVTCIASRHARI 123
            R DRF+LQ+H+RQFGT+++ARR+LHQLC ++T +A  + RI
Sbjct:  445 RMDRFVLQFHVRQFGTKKLARRNLHQLCKSITKLAPTNPRI 485
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BLAST of mRNA_P-wetherbeei_contig14105.1.1 vs. uniprot
Match: A0A6H5K7X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.780e-7
Identity = 23/41 (56.10%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 RFDRFILQYHIRQFGTRRVARRHLHQLCYTVTCIASRHARI 123
            R DRF+LQ+H+RQFGT+++ARR+LHQLC ++  +A  + RI
Sbjct:  559 RMDRFVLQFHVRQFGTKKLARRNLHQLCKSIAKLAPTNPRI 599
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX47_ECTSI1.200e-758.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7X3_9PHAE5.780e-756.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14105contigP-wetherbeei_contig14105:799..966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004290.1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.266097-CDS-P-wetherbeei_contig14105:798..9661683186009.266097-CDS-P-wetherbeei_contig14105:798..966Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14105 799..966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14105.1.1prot_P-wetherbeei_contig14105.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14105 799..966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14105.1.1

>prot_P-wetherbeei_contig14105.1.1 ID=prot_P-wetherbeei_contig14105.1.1|Name=mRNA_P-wetherbeei_contig14105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=56bp
RFDRFILQYHIRQFGTRRVARRHLHQLCYTVTCIASRHARIRLFAWMAGI
PIMVSR
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mRNA from alignment at P-wetherbeei_contig14105:799..966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14105.1.1 ID=mRNA_P-wetherbeei_contig14105.1.1|Name=mRNA_P-wetherbeei_contig14105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig14105:799..966+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGACCGCTTCATCCTGCAGTACCATATCCGCCAGTTTGGCACGCG
CCGCGTCGCCCGCCGACATCTGCACCAGCTGTGCTACACCGTCACGTGCA
TCGCTAGCCGCCACGCCCGCATTCGGCTCTTCGCGTGGATGGCGGGGATC
CCGATCATGGTGTCGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14105:799..966+

>mRNA_P-wetherbeei_contig14105.1.1 ID=mRNA_P-wetherbeei_contig14105.1.1|Name=mRNA_P-wetherbeei_contig14105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=168bp|location=Sequence derived from alignment at P-wetherbeei_contig14105:799..966+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCGACCGCTTCATCCTGCAGTACCATATCCGCCAGTTTGGCACGCG
CCGCGTCGCCCGCCGACATCTGCACCAGCTGTGCTACACCGTCACGTGCA
TCGCTAGCCGCCACGCCCGCATTCGGCTCTTCGCGTGGATGGCGGGGATC
CCGATCATGGTGTCGCGG
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