mRNA_P-wetherbeei_contig1410.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA) HSP 1 Score: 173 bits (438), Expect = 3.050e-45 Identity = 119/284 (41.90%), Postives = 147/284 (51.76%), Query Frame = 1
Query: 328 YQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAA--------PLYVHSTVMAADRGL--AAGGDGLG------------DGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLALELRLRAALCACFQDGFVALAAYRRAV 1113
Y YL+D+IE RTHW+EIATQFRAIF DG +A LA+WL RR F ALLR+ LPL++ AS+++LL+QCM F ASMGRLG DFRGLL P FE VW+ V QWR+A+ AF GL L + S+AAA + PL V + R AA G+ G DG + PPP SL+ +PLLA N ++ LN LRECAPL+LE LR L C ALAA+RRA+
Sbjct: 240 YSYLVDVIETCRTHWFEIATQFRAIFGADG------------------------------------------DAALASWLARRVGAFAALLRAALPLVEDAASVRSLLEQCMSFAASMGRLGADFRGLLVPAFEAAVWNGVTAQWRSATRAFQEGLARLAKASAHSSAAARSNAGAAPPLPLCVQKAPLGTPRAGSGAANGERWGGRDTAAAAAAECDGDALLPPPPLSLLNYPLLAHFFNDVVAGLNHLRECAPLSLEAGLREHLALCVDAVCEALAAHRRAL 481
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI) HSP 1 Score: 167 bits (422), Expect = 7.160e-42 Identity = 120/289 (41.52%), Postives = 155/289 (53.63%), Query Frame = 1
Query: 331 QYLMDLIEKNRTHWYEIATQFRAIF-SDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHS-TVMAADRGLAAGGDGL--------------------GDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLALELRLRAALCACFQDGFVALAAYRRAVLRIHSA 1131
Q LMDLIE R+ W+E+ATQFRAIF S +G GG GS + +L+ WL+RR F+ L+ LLPL++ G L++LL++CMFFGASMGRLG DFRGLL PVFEE V A A QW ASA FV L ++ ++ + A+ L+V + + RG A G G GDG G+ PPP SLMAFP +ARL+N +L S NQLREC P ++E RL AL F D F LA ++ LR ++A
Sbjct: 316 QALMDLIESCRSQWFEVATQFRAIFLSVEGSGG----------GSATAARQSAVSSPRVGEGLTTGSGRDSGD-ILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEECMFFGASMGRLGTDFRGLLVPVFEERVSGAAAAQWATASAEFVVTLRDVA-AIEAAGGNGASLLHVPDRSTITTSRGGPANGHGTSGAGAXXXXXXXXXRAALYGGDG--GIPPPPRSLMAFPPVARLLNLVLTSFNQLRECLPSSVEGRLADALVLSFTDAFRGLAELKKTTLRTNAA 590
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA) HSP 1 Score: 128 bits (321), Expect = 1.860e-29 Identity = 94/223 (42.15%), Postives = 117/223 (52.47%), Query Frame = 1
Query: 148 LEMRLQVTYLEARDAWLQDLLDEADKALGASV--AASFLGXXXXXXXXXXXXXXXRAA---GYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEE 801
LE+RLQV +LEARDAW+Q LD+ D G S L AA G+ YQYL D +EKNRT +EIATQF+AIF + XXXXXXX S A+ +LA WL RR FL LL +LPL++ GASL NLL+Q MFFGASMGR+G DFRGL+ P+F + + +W ASA A + +
Sbjct: 188 LELRLQVQFLEARDAWVQASLDQLDAQAGFSSDRLRQHLRLVRMRKMHPDQGGGESAAAGLGFQPYQYLTDAVEKNRTLCFEIATQFKAIFCGSADSSTASATAASGGNDGRAKAVDSSPPGHXXXXXXXXSDV--ADRLLAMWLSRRLGRFLNLLELVLPLVEDGASLHNLLEQTMFFGASMGRVGADFRGLIGPIFVKTIERFCKDRWGVASAQLCARIRD 408
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.130e-26 Identity = 103/320 (32.19%), Postives = 137/320 (42.81%), Query Frame = 1
Query: 148 LEMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEEL-----------RHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGP-------------PPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
LE LQ +L+ARDAWLQ L++ GAS A R G V LM +IE NRTHW+EI TQFRAIF DDG G + L G + VL+AWL+RR +FL L L + GA L ++++QC+FF ASMGR+G DFR L PVF + + W A+ A LE R + + + P+ ++ DG P PP+S++AFP LA+ N +L S NQLR+C P +L
Sbjct: 252 LEKELQTEFLDARDAWLQSELEQGRS--GASGA--------------------RGHGVGVAD-LMAMIEANRTHWFEITTQFRAIFLDDGLEASGSSSSTHSSSTSLL----------------RGQDGAGGSKVLSAWLLRRLALFLGELEDKLAHVTEGAVLADVMEQCLFFAASMGRIGGDFRASLGPVFSQAILAMADAHWSASRVELEALLERCAREGTMLRAQPRPHRQSGSGSHPYPMCYYAPGSTGPNQH----DGRDTAHHSAQPDPDTSTSESDFPAPPSSILAFPPLAQFTNLVLVSYNQLRQCTPWSL 528
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A7S2SW00_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW00_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.110e-21 Identity = 89/303 (29.37%), Postives = 130/303 (42.90%), Query Frame = 1
Query: 148 LEMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYN-VYQYLMDLIEKNRTHWYEIATQFRAIFSD----------DGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECA 1023
+E++LQ+ YLE R AWL L+ + + + G N V+QYLM L E++RT W+E+ATQFRAIFSD +G G G A +L++WL+R+T+ FL+ L L L+ G L +LLDQ +F G+S+GR+G DFR + VF + + + + Q+ A L E R + L AA PL + P SL+ FP+LA VN L +LN +R+C+
Sbjct: 183 MELKLQLDYLEGRTAWLHAELESIELKSIPMIGLLPKETTDQAASSSPEEIASDSGGQNAVFQYLMALFERHRTIWFEVATQFRAIFSDRSAPASEAEEEGSGAAAGPPRPPL-----------------------------ASRMLSSWLMRQTEFFLSDLERSLTLVTDGGMLGDLLDQALFLGSSLGRVGLDFRPQVLEVFGQRLVEVASSQFDRAHLELGRTLAEHRDAFLAGKPAACVPLTAATGXXXXXXXXXXXXXXXXXXXXAPPEAPVSLLGFPVLAVAVNTYLVALNHIRQCS 456
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A4Y7MDH5_9CRUS (Conserved oligomeric Golgi complex subunit 8 n=12 Tax=Daphnia TaxID=6668 RepID=A0A4Y7MDH5_9CRUS) HSP 1 Score: 107 bits (268), Expect = 1.220e-21 Identity = 79/295 (26.78%), Postives = 131/295 (44.41%), Query Frame = 1
Query: 151 EMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
E +++ +L+ARD+W + L+E K + YQ+++ +E +R H ++IATQ+RAIF+D+ P + A+ +W++++ FLA L+S LP + S +SL+++ QCM+FG S GR+G DFR LL P+F +VV+D + + F + + +S + A+ Y+ S +AD+ PP SL+ F LA L N L+ + N+LR CAP+ L
Sbjct: 252 EEEIRLKFLQARDSWFKSTLEEIPKE-------------------------------DAYQHILKTVELSRVHLFDIATQYRAIFTDEDP-----------------------------LVLANQDPSTNESAIYYSWIIQKITDFLAALQSDLPKV-SPSSLESVFGQCMYFGLSFGRIGSDFRSLLVPLFSQVVYDRFVHSANKSESQFAEAMASFSLTRTSSLGSNASYSYIQSAPSSADQIQ----------------PPYSLLKFSPLAELCNGLIAAFNELRMCAPIQL 469
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A4Y7MNI0_9CRUS (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A4Y7MNI0_9CRUS) HSP 1 Score: 107 bits (266), Expect = 1.320e-21 Identity = 79/295 (26.78%), Postives = 131/295 (44.41%), Query Frame = 1
Query: 151 EMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
E +++ +L+ARD+W + L+E K + YQ+++ +E +R H ++IATQ+RAIF+D+ P + A+ +W++++ FLA L+S LP + S +SL+++ QCM+FG S GR+G DFR LL P+F +VV+D + + F + + +S + A+ Y+ S +AD+ PP SL+ F LA L N L+ + N+LR CAP+ L
Sbjct: 23 EEEIRLKFLQARDSWFKSTLEEIPKE-------------------------------DAYQHILKTVELSRVHLFDIATQYRAIFTDEDP-----------------------------LVLANQDPNTNESAIYYSWIIQKITDFLAALQSDLPKV-SPSSLESVFGQCMYFGLSFGRIGSDFRSLLVPLFSQVVYDRFVHSANKSESQFAEAMASFSLTRTSSLGSNASYSYIQSAPSSADQIQ----------------PPYSLLKFSPLAELCNGLIAAFNELRMCAPIQL 240
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A4Y7N9T0_9CRUS (Conserved oligomeric Golgi complex subunit 8 n=10 Tax=Daphnia TaxID=6668 RepID=A0A4Y7N9T0_9CRUS) HSP 1 Score: 106 bits (265), Expect = 2.970e-21 Identity = 79/295 (26.78%), Postives = 130/295 (44.07%), Query Frame = 1
Query: 151 EMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
E +++ +L+ARD+W + L+E K + YQ+++ +E +R H ++IATQ+RAIF+D+ P + A+ +W++++ FL L+S LP + S +SL+++ QCM+FG S GR+G DFR LL P+F +VV+D + A F + + +S + A+ Y+ S +AD+ PP SL+ F LA L N L+ + N+LR CAP+ L
Sbjct: 259 EEEIRLKFLQARDSWFKSTLEEIPKE-------------------------------DAYQHILKTVELSRVHLFDIATQYRAIFTDEDP-----------------------------LVLANQDPNTNESAIYYSWIIQKITDFLGALQSDLPKV-SPSSLESVFGQCMYFGLSFGRIGSDFRSLLVPLFSQVVYDRFVHSANKSEAQFAEAMASFSLTRTSSLGSNASYSYIQSAPSSADQIQ----------------PPYSLLKFSPLAELCNGLIAAFNELRMCAPIQL 476
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A4Y7M1I6_9CRUS (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Daphnia dolichocephala TaxID=2282166 RepID=A0A4Y7M1I6_9CRUS) HSP 1 Score: 105 bits (262), Expect = 7.120e-21 Identity = 80/295 (27.12%), Postives = 130/295 (44.07%), Query Frame = 1
Query: 151 EMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
E +++ +L+ARD+W + LDE K + YQ+++ +E +R H ++IATQ+RAIF+D+ P + + A+ +W++++ F+ L+S LP + S +SL+++ QCM+FG S GR+G DFR LL P+F +VV+D + A F + S S + A+ Y+ ++ AD+ PP SLM F LA L N L+ + N+LR CAP+ L
Sbjct: 222 EEEIRLKFLQARDSWFKSTLDEIPKE-------------------------------DAYQHVLKTVELSRVHLFDIATQYRAIFTDEDP-----------------------------LVIANQNPNTNESAIYYSWIIQKITDFVGALQSDLPKV-SPSSLESVFGQCMYFGLSFGRIGSDFRSLLVPLFSQVVYDRFDHSANKSEAQFAEAMASFSLSRTGSFGSNASYSYIQTSPSPADQVQ----------------PPYSLMKFSPLAELCNGLIAAFNELRMCAPVQL 439
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Match: A0A4Y7M396_9CRUS (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Daphnia hispanica TaxID=575233 RepID=A0A4Y7M396_9CRUS) HSP 1 Score: 104 bits (259), Expect = 1.710e-20 Identity = 79/295 (26.78%), Postives = 128/295 (43.39%), Query Frame = 1
Query: 151 EMRLQVTYLEARDAWLQDLLDEADKALGASVAASFLGXXXXXXXXXXXXXXXRAAGYNVYQYLMDLIEKNRTHWYEIATQFRAIFSDDGPGGFGGXXXXXXXXXTKLGXXXXXXXXXXXXXXXXGSSCSRAEAVLAAWLVRRTDVFLALLRSLLPLIDSGASLQNLLDQCMFFGASMGRLGFDFRGLLSPVFEEVVWDAVAPQWRAASAAFVAGLEELRHSMLTSAAAAAAPLYVHSTVMAADRGLAAGGDGLGDGRIGVGPPPASLMAFPLLARLVNALLQSLNQLRECAPLAL 1035
E +++ +L+ARD+W + L+E K + YQ+++ +E +R H ++IATQ+RAIFSD+ P + A+ +W++++ FL L+S LP I S +SL+++ QCM+FG S GR+G DFR LL P+F +VV+D + A F + + +S + Y+ +T +AD+ PP L+ F LA L N L+ + N+LR CAP+ L
Sbjct: 224 EEEIRLKFLQARDSWFKSTLEEIPKE-------------------------------DAYQHIVKTVELSRVHLFDIATQYRAIFSDEDP-----------------------------LVLANQDPNTNESAIYYSWIIQKITDFLGALQSDLPKI-SPSSLESVFGQCMYFGLSFGRIGSDFRSLLVPLFSQVVYDRFVHSANKSEAQFAEAMASFSLTRTSSFGSNTGYSYIQTTPSSADQVQ----------------PPYGLIKFSPLAELCNGLIATFNELRMCAPVQL 441 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1410.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1410.6.1 >prot_P-wetherbeei_contig1410.6.1 ID=prot_P-wetherbeei_contig1410.6.1|Name=mRNA_P-wetherbeei_contig1410.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=396bp DGYGSSGASEELTGAESGSAQAAEAVEVAEAETAAAATEAAAVARQARLLback to top mRNA from alignment at P-wetherbeei_contig1410:5643..7227- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1410.6.1 ID=mRNA_P-wetherbeei_contig1410.6.1|Name=mRNA_P-wetherbeei_contig1410.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1585bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:5643..7227- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1410:5643..7227- >mRNA_P-wetherbeei_contig1410.6.1 ID=mRNA_P-wetherbeei_contig1410.6.1|Name=mRNA_P-wetherbeei_contig1410.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1188bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:5643..7227- (Phaeothamnion wetherbeei SAG_119_79)back to top |