mRNA_P-wetherbeei_contig1410.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1410.5.1
Unique NamemRNA_P-wetherbeei_contig1410.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1410.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1410contigP-wetherbeei_contig1410:4919..5518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size600
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.075272-UTR-P-wetherbeei_contig1410:4918..50481683186009.075272-UTR-P-wetherbeei_contig1410:4918..5048Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1410 4919..5048 -
1683186009.0907052-UTR-P-wetherbeei_contig1410:5411..55181683186009.0907052-UTR-P-wetherbeei_contig1410:5411..5518Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1410 5412..5518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186009.0831347-CDS-P-wetherbeei_contig1410:5048..54111683186009.0831347-CDS-P-wetherbeei_contig1410:5048..5411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1410 5049..5411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1410.5.1prot_P-wetherbeei_contig1410.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1410 5049..5411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1410.5.1

>prot_P-wetherbeei_contig1410.5.1 ID=prot_P-wetherbeei_contig1410.5.1|Name=mRNA_P-wetherbeei_contig1410.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MTATLQKRMAERGIYRIPEPPPATPGSTAMAAAFDRGASLRQTASHEAAV
AAVAAVDGGAPAAPATPEYAAVMDTATSAVAILASEAIAAPDGKMTEGAS
ASEGAPLEAPPNTDAAAQDV*
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mRNA from alignment at P-wetherbeei_contig1410:4919..5518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1410.5.1 ID=mRNA_P-wetherbeei_contig1410.5.1|Name=mRNA_P-wetherbeei_contig1410.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:4919..5518- (Phaeothamnion wetherbeei SAG_119_79)
TGGCAGAGCGGGCGGTTCCGCATGTGTGCCGGTGCTTCGCAGAAGTGTTT
GGGGGCGGCGGCGGCGGCGCCACGGCGGGGGCGGCGGCTGAGGCGCTGGC
GGTGGAGATGACGGCGACGCTGCAGAAGCGCATGGCGGAGCGCGGCATCT
ACCGGATCCCGGAGCCGCCGCCGGCAACACCCGGCTCCACGGCCATGGCA
GCGGCATTCGACAGGGGCGCATCGCTGCGGCAGACGGCAAGCCACGAAGC
GGCGGTAGCTGCAGTGGCGGCGGTGGACGGCGGGGCGCCCGCTGCACCTG
CAACTCCTGAATACGCCGCCGTGATGGACACAGCGACATCAGCAGTGGCA
ATATTGGCTTCAGAGGCGATTGCGGCGCCCGACGGCAAAATGACAGAGGG
TGCGAGTGCGAGCGAGGGCGCTCCTCTTGAGGCGCCGCCAAATACGGACG
CGGCGGCGCAAGATGTTTAAAAGGTAAAGCATTGTACCCTGAAATAGGGA
ACCTCAGGCATAAATTTCGTAAGGGATATCATTCCCCGCGATGGAAAAAT
CTGTACGGCAGTCAAATCACGTGTGAACAGTCGGCTCCGGTCGAATATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1410:4919..5518-

>mRNA_P-wetherbeei_contig1410.5.1 ID=mRNA_P-wetherbeei_contig1410.5.1|Name=mRNA_P-wetherbeei_contig1410.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig1410:4919..5518- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGACGCTGCAGAAGCGCATGGCGGAGCGCGGCATCTACCGGAT
CCCGGAGCCGCCGCCGGCAACACCCGGCTCCACGGCCATGGCAGCGGCAT
TCGACAGGGGCGCATCGCTGCGGCAGACGGCAAGCCACGAAGCGGCGGTA
GCTGCAGTGGCGGCGGTGGACGGCGGGGCGCCCGCTGCACCTGCAACTCC
TGAATACGCCGCCGTGATGGACACAGCGACATCAGCAGTGGCAATATTGG
CTTCAGAGGCGATTGCGGCGCCCGACGGCAAAATGACAGAGGGTGCGAGT
GCGAGCGAGGGCGCTCCTCTTGAGGCGCCGCCAAATACGGACGCGGCGGC
GCAAGATGTTTAA
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