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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1971 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-13_004250.1 |
| Cds size | 1881 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186008.7380807-UTR-P-wetherbeei_contig141:8325..8384 | 1683186008.7380807-UTR-P-wetherbeei_contig141:8325..8384 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig141 8326..8384 + |
| 1683186008.7556708-UTR-P-wetherbeei_contig141:10265..10296 | 1683186008.7556708-UTR-P-wetherbeei_contig141:10265..10296 | Phaeothamnion wetherbeei SAG_119_79 | UTR | P-wetherbeei_contig141 10266..10296 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1683186008.7483902-CDS-P-wetherbeei_contig141:8384..10265 | 1683186008.7483902-CDS-P-wetherbeei_contig141:8384..10265 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig141 8385..10265 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig141.4.1 >prot_P-wetherbeei_contig141.4.1 ID=prot_P-wetherbeei_contig141.4.1|Name=mRNA_P-wetherbeei_contig141.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=627bp
MTRGRGESADAFAAPPRFVLHAVAVLRWAGAAELTPELLRRARHGVRDAG
VATALWRTLLIVVLQQLFAESDTGVDSPEHTFAEGTAVAAACAVLPSDAV
PEAVAYFLRRWGYRRKALDACLRRKDIHEAREVLLALGWAMARCRVFGRY
WQDHLMAADSAEIMCPLPQAATEWHEHVRAAWLAGDAQICTSAQHRRRIE
RETDSDSSGRAEATDAANALLETYSRLNGRLRELMNLERSHRTMCCRLGV
LQERVLLLRAEDVSVGATGSGCVTVEGPGTGAANRWAGGSAAGGSSGGGG
TSSTGWQPPRVSDLGPFELCLLSNPRRLEAYMTWLRACCDSLELYEASAD
LERRWWEWLERAAAAAADELGPAAPTDAVRGSSNGTAAPNARETKKAADT
VWESQTMSAEPTAAAMTATAAAAAAAVAAVTPVAAAAAVSALQTLVLKQA
LAVTCCDRSYRRGHYPGSNDEPPVDVLGPPWNGRHTVAPNIKLAAALDML
EQELGLERRVSGGGDGGSGNGGGGSGGGGGGRDGHAARSRFSASFEEASA
AAAKLRRRWSLGPSRWLRGGGGSAGDQEFADAGAALAEMGRVARLADQRR
LSTDRIRRNLRAWGPYMRHTVHVATG* back to topmRNA from alignment at P-wetherbeei_contig141:8326..10296+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig141.4.1 ID=mRNA_P-wetherbeei_contig141.4.1|Name=mRNA_P-wetherbeei_contig141.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1971bp|location=Sequence derived from alignment at P-wetherbeei_contig141:8326..10296+ (Phaeothamnion wetherbeei SAG_119_79)
ATTTTGGGATTTTAAGGGTGGGGTATCTTCTTTTTCTAAATCATGATCGT
ACTCTAAAAATGACTCGAGGGCGAGGAGAGAGTGCCGACGCCTTCGCCGC
TCCGCCTCGCTTCGTCTTGCACGCAGTGGCGGTGCTGCGCTGGGCTGGAG
CCGCCGAACTGACGCCGGAGCTCCTCCGTCGCGCGAGACACGGCGTTCGA
GACGCAGGTGTCGCGACCGCGTTGTGGAGGACGCTCCTGATCGTAGTGCT
GCAGCAGCTATTCGCTGAAAGCGACACTGGTGTCGATTCTCCGGAGCACA
CGTTTGCTGAAGGCACTGCCGTCGCTGCGGCTTGTGCCGTCCTCCCCTCC
GACGCTGTGCCCGAGGCCGTGGCGTACTTCCTGCGGCGCTGGGGCTATCG
CCGAAAAGCGCTCGACGCATGCCTTCGAAGGAAAGACATCCATGAAGCCA
GAGAAGTGCTCTTGGCGCTGGGGTGGGCCATGGCTCGATGCCGAGTCTTT
GGCCGGTATTGGCAAGATCATCTTATGGCGGCCGATAGCGCGGAAATCAT
GTGCCCGCTGCCGCAAGCCGCCACCGAGTGGCATGAGCACGTGAGGGCTG
CGTGGCTTGCCGGGGACGCACAGATTTGCACTTCCGCCCAGCATCGCCGC
CGCATCGAAAGGGAAACAGATAGCGACAGTTCTGGACGGGCTGAGGCCAC
CGACGCGGCCAACGCGCTCCTGGAAACATACAGCCGGCTTAACGGCCGCC
TCCGTGAGCTCATGAATCTCGAGCGCAGCCACCGAACAATGTGTTGCAGG
CTCGGAGTGCTGCAAGAACGCGTACTCCTTCTGCGGGCTGAAGATGTTAG
CGTCGGCGCTACCGGCAGCGGCTGCGTCACCGTCGAGGGGCCTGGCACCG
GGGCTGCTAACAGATGGGCCGGCGGCAGTGCGGCTGGAGGTAGCAGCGGC
GGTGGCGGTACCAGTAGTACCGGCTGGCAGCCGCCCCGCGTTTCCGATCT
TGGGCCCTTCGAGCTCTGTCTGTTATCCAATCCGCGGCGGCTCGAGGCGT
ACATGACCTGGCTGCGGGCGTGCTGCGACTCGCTCGAGCTTTACGAGGCG
AGTGCCGACCTTGAGCGCCGCTGGTGGGAGTGGCTGGAACGAGCCGCTGC
TGCTGCCGCTGACGAACTGGGACCGGCGGCGCCAACAGACGCGGTTCGGG
GAAGCAGCAATGGCACCGCCGCGCCAAATGCGCGTGAGACCAAAAAAGCT
GCAGACACTGTCTGGGAGTCCCAGACAATGTCGGCAGAACCGACGGCGGC
GGCGATGACAGCAACGGCGGCGGCAGCGGCGGCGGCAGTAGCAGCAGTGA
CGCCGGTGGCAGCAGCAGCGGCTGTGTCGGCGCTGCAAACCCTGGTTTTG
AAGCAGGCCTTGGCCGTCACATGCTGCGACAGGAGTTACCGCCGTGGGCA
TTATCCCGGTAGCAACGACGAGCCGCCTGTTGACGTGCTCGGCCCTCCGT
GGAACGGGAGGCATACCGTCGCTCCCAATATCAAGCTGGCTGCAGCTTTG
GATATGTTGGAGCAGGAGCTGGGCCTCGAAAGACGCGTCAGTGGCGGCGG
CGACGGCGGCAGCGGCAACGGTGGTGGCGGCAGCGGCGGCGGCGGCGGCG
GCCGCGATGGACACGCAGCGAGGAGCCGATTCTCAGCCAGTTTTGAAGAA
GCCAGTGCCGCGGCCGCAAAGTTGCGGCGGCGGTGGTCTCTGGGGCCATC
TCGGTGGCTGCGCGGCGGAGGAGGAAGCGCTGGCGATCAGGAGTTCGCCG
ACGCCGGCGCCGCACTAGCCGAAATGGGGAGGGTGGCGAGGTTGGCAGAT
CAGCGGCGGTTGAGCACCGACCGGATACGACGCAACTTGCGGGCATGGGG
ACCATACATGAGACACACAGTGCACGTCGCTACCGGGTGAAAGAACAAAA
GGAAGACATGGCATCTCTTTC back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig141:8326..10296+ >mRNA_P-wetherbeei_contig141.4.1 ID=mRNA_P-wetherbeei_contig141.4.1|Name=mRNA_P-wetherbeei_contig141.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1881bp|location=Sequence derived from alignment at P-wetherbeei_contig141:8326..10296+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCGAGGGCGAGGAGAGAGTGCCGACGCCTTCGCCGCTCCGCCTCG
CTTCGTCTTGCACGCAGTGGCGGTGCTGCGCTGGGCTGGAGCCGCCGAAC
TGACGCCGGAGCTCCTCCGTCGCGCGAGACACGGCGTTCGAGACGCAGGT
GTCGCGACCGCGTTGTGGAGGACGCTCCTGATCGTAGTGCTGCAGCAGCT
ATTCGCTGAAAGCGACACTGGTGTCGATTCTCCGGAGCACACGTTTGCTG
AAGGCACTGCCGTCGCTGCGGCTTGTGCCGTCCTCCCCTCCGACGCTGTG
CCCGAGGCCGTGGCGTACTTCCTGCGGCGCTGGGGCTATCGCCGAAAAGC
GCTCGACGCATGCCTTCGAAGGAAAGACATCCATGAAGCCAGAGAAGTGC
TCTTGGCGCTGGGGTGGGCCATGGCTCGATGCCGAGTCTTTGGCCGGTAT
TGGCAAGATCATCTTATGGCGGCCGATAGCGCGGAAATCATGTGCCCGCT
GCCGCAAGCCGCCACCGAGTGGCATGAGCACGTGAGGGCTGCGTGGCTTG
CCGGGGACGCACAGATTTGCACTTCCGCCCAGCATCGCCGCCGCATCGAA
AGGGAAACAGATAGCGACAGTTCTGGACGGGCTGAGGCCACCGACGCGGC
CAACGCGCTCCTGGAAACATACAGCCGGCTTAACGGCCGCCTCCGTGAGC
TCATGAATCTCGAGCGCAGCCACCGAACAATGTGTTGCAGGCTCGGAGTG
CTGCAAGAACGCGTACTCCTTCTGCGGGCTGAAGATGTTAGCGTCGGCGC
TACCGGCAGCGGCTGCGTCACCGTCGAGGGGCCTGGCACCGGGGCTGCTA
ACAGATGGGCCGGCGGCAGTGCGGCTGGAGGTAGCAGCGGCGGTGGCGGT
ACCAGTAGTACCGGCTGGCAGCCGCCCCGCGTTTCCGATCTTGGGCCCTT
CGAGCTCTGTCTGTTATCCAATCCGCGGCGGCTCGAGGCGTACATGACCT
GGCTGCGGGCGTGCTGCGACTCGCTCGAGCTTTACGAGGCGAGTGCCGAC
CTTGAGCGCCGCTGGTGGGAGTGGCTGGAACGAGCCGCTGCTGCTGCCGC
TGACGAACTGGGACCGGCGGCGCCAACAGACGCGGTTCGGGGAAGCAGCA
ATGGCACCGCCGCGCCAAATGCGCGTGAGACCAAAAAAGCTGCAGACACT
GTCTGGGAGTCCCAGACAATGTCGGCAGAACCGACGGCGGCGGCGATGAC
AGCAACGGCGGCGGCAGCGGCGGCGGCAGTAGCAGCAGTGACGCCGGTGG
CAGCAGCAGCGGCTGTGTCGGCGCTGCAAACCCTGGTTTTGAAGCAGGCC
TTGGCCGTCACATGCTGCGACAGGAGTTACCGCCGTGGGCATTATCCCGG
TAGCAACGACGAGCCGCCTGTTGACGTGCTCGGCCCTCCGTGGAACGGGA
GGCATACCGTCGCTCCCAATATCAAGCTGGCTGCAGCTTTGGATATGTTG
GAGCAGGAGCTGGGCCTCGAAAGACGCGTCAGTGGCGGCGGCGACGGCGG
CAGCGGCAACGGTGGTGGCGGCAGCGGCGGCGGCGGCGGCGGCCGCGATG
GACACGCAGCGAGGAGCCGATTCTCAGCCAGTTTTGAAGAAGCCAGTGCC
GCGGCCGCAAAGTTGCGGCGGCGGTGGTCTCTGGGGCCATCTCGGTGGCT
GCGCGGCGGAGGAGGAAGCGCTGGCGATCAGGAGTTCGCCGACGCCGGCG
CCGCACTAGCCGAAATGGGGAGGGTGGCGAGGTTGGCAGATCAGCGGCGG
TTGAGCACCGACCGGATACGACGCAACTTGCGGGCATGGGGACCATACAT
GAGACACACAGTGCACGTCGCTACCGGGTGA back to top
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