mRNA_P-wetherbeei_contig14099.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14099.1.1
Unique NamemRNA_P-wetherbeei_contig14099.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14099.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14099contigP-wetherbeei_contig14099:51..1714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo128371
PFAMsSWIM
Model size1432
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.83e-05
EggNOG OGs2EBST@1|root,2SHTE@2759|Eukaryota,3QGB4@4776|Peronosporales
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.627215-UTR-P-wetherbeei_contig14099:50..1371683186008.627215-UTR-P-wetherbeei_contig14099:50..137Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14099 51..137 +
1683186008.6373065-UTR-P-wetherbeei_contig14099:369..4161683186008.6373065-UTR-P-wetherbeei_contig14099:369..416Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14099 370..416 +
1683186008.6560264-UTR-P-wetherbeei_contig14099:1238..17141683186008.6560264-UTR-P-wetherbeei_contig14099:1238..1714Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14099 1239..1714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.6463246-CDS-P-wetherbeei_contig14099:416..12381683186008.6463246-CDS-P-wetherbeei_contig14099:416..1238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14099 417..1238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14099.1.1prot_P-wetherbeei_contig14099.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14099 417..1238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14099.1.1

>prot_P-wetherbeei_contig14099.1.1 ID=prot_P-wetherbeei_contig14099.1.1|Name=mRNA_P-wetherbeei_contig14099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MLGAAHALSVLLRPRDEQLGRERAELVRLGGTGSVADGGAGGRLPNELRV
MEREEAGRHHRQAEGKLCTVESFKLFERERAGEYAIMPASATVFQALCQG
KRQQVDVEVFTCTCRFPQQYKIACCHMIAVHLFRRNQPLQLSELIDSAFL
VSQYIEAYGVPVFMPLLEELIQHEKIRPPLPVVRPGKQKGSKKRKASEAV
GGGSSAAVSVGGGAASAGIGAAAGSGTRKGPQWQERFPSNGEFNHTARYA
PMPAVRPVAMAVDTAAAAAHAYF*
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mRNA from alignment at P-wetherbeei_contig14099:51..1714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14099.1.1 ID=mRNA_P-wetherbeei_contig14099.1.1|Name=mRNA_P-wetherbeei_contig14099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1664bp|location=Sequence derived from alignment at P-wetherbeei_contig14099:51..1714+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAGCCGGGGGGGGGACGAAGCTCGTGTGGGAGGCTGCAAGGGCGGCCA
ACCTGGCCGACTCCAACACTGCCACGGCCAAGCTGAAGTGCGTGGTAAGA
GTCCGCCTTTGCCTGATTCCTTTCATGTCCAGTGCTAGTCCGGCACGGGT
CCACCCACACTCCGTCTCTTCTTCCTCTATGCTGGCATCAGTTTCTTATG
CTAAACCTTTGCCGCCGCCGATTCTCGCCCTATTCTTTTTTTCCGTCAGA
TTAAACCATGCATAGAATGGTATCTACAACATCCCTGCCTTTCTGCTTTT
CCTTTTTCGAGCCCTGCAGGCGCCGGGGACGCACAACTTCCTGCTGGGCG
AGAACCAGACGCCTGCATGCTGGGCGCTGCGCATGCGTTGTCTGTCTTGT
TACGGCCAAGAGACGAACAACTGGGTCGAGAGCGCGCTGAACTGGTTCGT
CTCGGAGGTACTGGAAGCGTCGCCGATGGAGGTGCTGGAGGACGTCTGCC
TAACGAACTCCGCGTCATGGAGCGCGAAGAAGCAGGCAGGCATCATCGTC
AAGCGGAGGGCAAGCTGTGCACGGTCGAGTCCTTCAAGCTGTTCGAGAGG
GAGCGGGCGGGCGAGTATGCCATTATGCCGGCGTCGGCGACCGTCTTCCA
GGCCCTATGCCAAGGCAAGCGGCAGCAGGTGGACGTTGAGGTCTTCACAT
GCACGTGCCGCTTCCCGCAGCAGTACAAGATCGCGTGCTGCCACATGATC
GCCGTCCACCTCTTCAGGAGGAACCAGCCGCTCCAGCTGTCTGAGCTCAT
CGACTCCGCTTTTCTGGTATCGCAGTACATCGAGGCGTACGGCGTGCCGG
TGTTCATGCCACTCCTTGAGGAGCTCATCCAGCATGAGAAGATCCGGCCG
CCGCTACCGGTAGTCCGACCTGGCAAACAGAAGGGCTCGAAGAAGAGGAA
GGCCAGCGAGGCTGTCGGCGGCGGCAGCAGTGCGGCAGTGTCGGTGGGCG
GCGGCGCGGCATCGGCGGGTATTGGCGCGGCGGCGGGCAGCGGCACACGG
AAAGGGCCGCAGTGGCAGGAACGCTTCCCCAGCAACGGGGAGTTCAACCA
TACCGCAAGGTACGCGCCGATGCCTGCGGTGAGGCCGGTCGCAATGGCCG
TTGATACAGCGGCGGCTGCAGCACATGCATACTTTTGAAGGGGAAGGAGG
GGCACGCCCAGCCAAAATGCCTGGTTGCTGCCTGTGTCGGTAATTGGCCG
GGCGGAGCGCTCGGGGAGGTTGTAAGACATCGGAGGGTGAAAGTTAGAGA
CAGGAGACTCAGTATGTCTCATGGGGCTAGCAGTTTCTTTAGATGAGCAT
AAACGCGTGCCAGAAGAGTGAAATGGAATTAGGGGGATGGTTCGTCGCAT
AAATGGTTGCCGGGGCAGTCGTGCGAGACAATAATTGACTTCTGAGGATG
ATGGGTTACAAGGACGGCTAAATGGAAGTGCATAGTCTTCAGTGTTGTGC
TGCAACGCTGCCTACTAACGTCGGCATGGAAAAAGTATGCGCGTGGAACG
CGGCAAGAAAAGGTATAGAAGGTTTCCACACTTGAAACGACTACGACTAC
TCGACTAACGACTAAGTCGATTCGGATCTCCGATTTACTGACACGACTAT
CGACTATAGTCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14099:51..1714+

>mRNA_P-wetherbeei_contig14099.1.1 ID=mRNA_P-wetherbeei_contig14099.1.1|Name=mRNA_P-wetherbeei_contig14099.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig14099:51..1714+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGGCGCTGCGCATGCGTTGTCTGTCTTGTTACGGCCAAGAGACGA
ACAACTGGGTCGAGAGCGCGCTGAACTGGTTCGTCTCGGAGGTACTGGAA
GCGTCGCCGATGGAGGTGCTGGAGGACGTCTGCCTAACGAACTCCGCGTC
ATGGAGCGCGAAGAAGCAGGCAGGCATCATCGTCAAGCGGAGGGCAAGCT
GTGCACGGTCGAGTCCTTCAAGCTGTTCGAGAGGGAGCGGGCGGGCGAGT
ATGCCATTATGCCGGCGTCGGCGACCGTCTTCCAGGCCCTATGCCAAGGC
AAGCGGCAGCAGGTGGACGTTGAGGTCTTCACATGCACGTGCCGCTTCCC
GCAGCAGTACAAGATCGCGTGCTGCCACATGATCGCCGTCCACCTCTTCA
GGAGGAACCAGCCGCTCCAGCTGTCTGAGCTCATCGACTCCGCTTTTCTG
GTATCGCAGTACATCGAGGCGTACGGCGTGCCGGTGTTCATGCCACTCCT
TGAGGAGCTCATCCAGCATGAGAAGATCCGGCCGCCGCTACCGGTAGTCC
GACCTGGCAAACAGAAGGGCTCGAAGAAGAGGAAGGCCAGCGAGGCTGTC
GGCGGCGGCAGCAGTGCGGCAGTGTCGGTGGGCGGCGGCGCGGCATCGGC
GGGTATTGGCGCGGCGGCGGGCAGCGGCACACGGAAAGGGCCGCAGTGGC
AGGAACGCTTCCCCAGCAACGGGGAGTTCAACCATACCGCAAGGTACGCG
CCGATGCCTGCGGTGAGGCCGGTCGCAATGGCCGTTGATACAGCGGCGGC
TGCAGCACATGCATACTTTTGA
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