mRNA_P-wetherbeei_contig14091.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14091.1.1
Unique NamemRNA_P-wetherbeei_contig14091.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A6H5K6C5_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C5_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.080e-44
Identity = 94/187 (50.27%), Postives = 120/187 (64.17%), Query Frame = 1
Query:    1 VPYSDFVGQVAGALGYPPPAGCGAPLWLWLLAVTAW-RLLALLLRPFCALRLQPPGAAAAVAAARRFRVDDARARHTLGYAPLWTAAEAAALTFSDPPRPLCNPQARVRHAGPFPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAELES 558
            VPY +F  +    LGYP  AG G    L   A+    R+LAL++ P    R        A  +A R R+D +RAR  LGY PLW+  E   +T       L NP+A+++H GPF A +V+RH++EDDAWI+VDGKV+DVT+Y+ QHPGG AILRNAGGDS+ GMHGPQHP  AMEIL+  YI  LE+
Sbjct:  286 VPYGEFAARALSRLGYPDGAGSGGMSVLLATALALLLRVLALVVSPVFEFRPALTALRVAEESAVR-RLDTSRAREGLGYTPLWSQEEGLDITLHGATA-LRNPRAKLKHIGPFTAEEVARHSSEDDAWIIVDGKVYDVTSYLHQHPGGDAILRNAGGDSTEGMHGPQHPPSAMEILQTLYIGLLEA 470          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A836CIL1_9STRA (3-beta hydroxysteroid dehydrogenase/isomerase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL1_9STRA)

HSP 1 Score: 148 bits (374), Expect = 6.210e-39
Identity = 89/186 (47.85%), Postives = 108/186 (58.06%), Query Frame = 1
Query:    1 VPYSDFVGQVAGALGYPPPAGCGAPLWLWLLAVTAWRLLALLLRPFCALRLQPPGAAAAVAAARRFRVDDARARHTL-GYAPLWTAAEAAALTF-SDPPRPLCNPQARVRHAGPFPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            VPY  FVG V   LGY   A    P  +       +  +A +     ALR  P      + +  RF+     A H L GY P W+ AEA  +T  S   R L NP ARVR  GPF A +V+RH   DDAWI+VDGKV+ VT Y++QHPGG AIL NAG DSSAG HGPQHPAQA E+L+E Y+ +L
Sbjct:  251 VPYRQFVGGVLEGLGYGSKAATSVPYAVAFSLALFFHAVAFMFGSVVALR--PRLTLGRLKSLTRFQYYSGAAAHELLGYHPPWSRAEALQITLQSADARALRNPAARVRPVGPFSAAEVARHRTADDAWIIVDGKVYAVTPYLEQHPGGDAILNNAGADSSAGFHGPQHPAQAAEVLQEFYVGDL 434          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A4D9CSF7_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSF7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.790e-26
Identity = 82/194 (42.27%), Postives = 102/194 (52.58%), Query Frame = 1
Query:    1 VPYSDFVGQVAGALGYPPPAGCGAPLWLWLLAVTAWRL-LALLLRPFCALRLQPPGAAAAV---AAARRFRVDDARARHTLGYAPLWTAAEAAALTFSDPPRPLCNPQA------RVRHAGPFP---AGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYI 543
            VP+ DF+ QV    GYP P+    P  L +  V  W   +A LLR    +R QP    + V        + ++  +A+  LGYAP W+  EA AL F      L NP+A       V+     P     QVSRH    DAWIVVDGKV+DVT YVD HPG  AILR  GGDSS G HGPQHP    +++ E+ I
Sbjct:  305 VPFWDFLAQVLTGFGYPAPS-VRLPAGL-MTVVGGWMDGMATLLR-MVGVRFQPTFTRSRVQYLTTHHYYSIE--KAKRLLGYAPAWSQEEALALCFQCMMPALANPRAPKPRRVTVKKGQSVPIYTVQQVSRHNTRGDAWIVVDGKVYDVTEYVDVHPGDDAILRFVGGDSSKGFHGPQHPVSVWDVIAEYEI 493          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: F4PV33_CAVFA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PV33_CAVFA)

HSP 1 Score: 102 bits (255), Expect = 1.050e-24
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  289 PRPLCNPQARVRHAGP---FPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            P+ +    +RVR+ GP   F   +V+RH  EDD W+++DGKV+D+T YVDQH GG+AI+RNAG DSS G HG QHP +  +IL E+YI E 
Sbjct:   43 PKVVKKKSSRVRYDGPTRYFTQEEVARHDKEDDLWLIIDGKVYDLTTYVDQHVGGLAIMRNAGKDSSEGFHGEQHPVKVEQILLEYYIGEF 133          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A6V1SKW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SKW1_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 1.070e-23
Identity = 41/81 (50.62%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  310 QARVRHAGPFPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            ++ V+  GPF   +V++H + DDAWI++DGKV+D+T Y+D HPGG AIL   GGD+S G HGPQHP    +++ E++I EL
Sbjct:   35 RSEVKPEGPFTKEEVAKHNSPDDAWIIIDGKVYDITDYIDIHPGGEAILGPLGGDASKGFHGPQHPVTVFDVIPEYFIGEL 115          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: UPI0006448B04 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448B04)

HSP 1 Score: 97.8 bits (242), Expect = 7.290e-23
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  337 FPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            + A +VS H  EDD W+++DGKV+DVT YVD+H GG+AI+RNAG DSS G HG QHP +  +ILE+ YI EL
Sbjct:   53 YTAEEVSVHDKEDDLWLIIDGKVYDVTPYVDKHMGGLAIMRNAGKDSSKGFHGDQHPVKVAQILEDFYIGEL 124          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: C1EHU3_MICCC (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EHU3_MICCC)

HSP 1 Score: 97.8 bits (242), Expect = 1.010e-22
Identity = 40/75 (53.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  331 GPFPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMA-ILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            G + A  V++H A+DD W+++DG V+DVT YVD+HPGG+A I++NAGGD++ G HGPQHP++ M+I++E+ I  L
Sbjct:   55 GSYTAADVAKHKAQDDLWLIIDGNVYDVTEYVDEHPGGVAAIMKNAGGDATKGFHGPQHPSRVMDIVDEYKIGTL 129          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A7J7IN75_9RHOD (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IN75_9RHOD)

HSP 1 Score: 97.1 bits (240), Expect = 2.380e-22
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  337 FPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            F A +VS+H   D  W+++DG+V+DVT+Y+D HPGG AI RNAG DSSAG HG QHP +  EIL + YI EL
Sbjct:   67 FTAAEVSQHYTRDSLWLIIDGRVYDVTSYIDHHPGGDAIFRNAGRDSSAGFHGDQHPEKVNEILPDFYIGEL 138          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: A0A0L0D5W6_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5W6_THETB)

HSP 1 Score: 97.8 bits (242), Expect = 6.640e-22
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1
Query:  337 FPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAE 549
            F A +VS+HA+ +D W++V GKV+DVT YVD H GG AIL NAGGD++ G HGPQHP++A E+L+E+YI E
Sbjct:   54 FLAAEVSKHASPEDLWMIVHGKVYDVTPYVDTHEGGDAILNNAGGDNTDGFHGPQHPSKAHEMLKEYYIGE 124          
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Match: D3AXL9_POLPP (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AXL9_POLPP)

HSP 1 Score: 94.7 bits (234), Expect = 1.060e-21
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  337 FPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMAILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAEL 552
            + A +VS H  E D W+++DGKV+DVT YVD+H GGMAI+ NAG DSS G HG QHP +  +IL+E YI EL
Sbjct:   50 YTAEEVSVHNKETDLWLIIDGKVYDVTPYVDKHMGGMAIMNNAGKDSSKGFHGDQHPVKVQQILDEFYIGEL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14091.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6C5_9PHAE1.080e-4450.27Cytochrome b5 heme-binding domain-containing prote... [more]
A0A836CIL1_9STRA6.210e-3947.853-beta hydroxysteroid dehydrogenase/isomerase fami... [more]
A0A4D9CSF7_9STRA6.790e-2642.27Cytochrome b5 heme-binding domain-containing prote... [more]
F4PV33_CAVFA1.050e-2452.75Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6V1SKW1_HETAK1.070e-2350.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0006448B047.290e-2359.72hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
C1EHU3_MICCC1.010e-2253.33Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7J7IN75_9RHOD2.380e-2258.33Cytochrome b5 heme-binding domain-containing prote... [more]
A0A0L0D5W6_THETB6.640e-2260.56Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
D3AXL9_POLPP1.060e-2158.33Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14091contigP-wetherbeei_contig14091:1180..1752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002506308.1
PFAMsCyt-b5
Model size573
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.66e-23
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,37WIJ@33090|Viridiplantae,34N98@3041|Chlorophyta
DescriptionBelongs to the cytochrome b5 family
Cds size573
COG categoryC
BiGG ReactioniRC1080.CRv4_Au5_s13_g4791_t1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.5373333-CDS-P-wetherbeei_contig14091:1179..17521683186008.5373333-CDS-P-wetherbeei_contig14091:1179..1752Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14091 1180..1752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14091.1.1prot_P-wetherbeei_contig14091.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14091 1180..1752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14091.1.1

>prot_P-wetherbeei_contig14091.1.1 ID=prot_P-wetherbeei_contig14091.1.1|Name=mRNA_P-wetherbeei_contig14091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
VPYSDFVGQVAGALGYPPPAGCGAPLWLWLLAVTAWRLLALLLRPFCALR
LQPPGAAAAVAAARRFRVDDARARHTLGYAPLWTAAEAAALTFSDPPRPL
CNPQARVRHAGPFPAGQVSRHAAEDDAWIVVDGKVFDVTAYVDQHPGGMA
ILRNAGGDSSAGMHGPQHPAQAMEILEEHYIAELESVAKS*
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mRNA from alignment at P-wetherbeei_contig14091:1180..1752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14091.1.1 ID=mRNA_P-wetherbeei_contig14091.1.1|Name=mRNA_P-wetherbeei_contig14091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig14091:1180..1752- (Phaeothamnion wetherbeei SAG_119_79)
GTCCCGTACAGCGACTTTGTCGGGCAGGTGGCCGGGGCACTGGGTTACCC GCCGCCGGCCGGCTGCGGCGCCCCGCTCTGGCTGTGGCTGCTGGCGGTGA CGGCCTGGCGGCTGCTGGCGCTGCTCCTCCGTCCGTTCTGCGCGCTGCGG CTGCAACCGCCAGGCGCTGCCGCTGCCGTCGCCGCCGCGCGGCGCTTCCG CGTCGACGACGCGCGCGCCCGCCACACGCTCGGTTACGCGCCGCTCTGGA CCGCTGCTGAGGCTGCGGCGCTGACATTTTCCGACCCGCCGCGGCCGCTC TGCAACCCCCAAGCCCGGGTCCGGCACGCAGGGCCGTTCCCGGCGGGGCA GGTGAGCCGCCACGCCGCTGAGGACGACGCCTGGATCGTCGTGGACGGGA AGGTGTTCGACGTGACGGCGTATGTGGATCAGCATCCCGGCGGAATGGCG ATCCTGCGGAACGCTGGCGGCGACTCGTCGGCGGGCATGCACGGGCCGCA GCACCCGGCGCAGGCCATGGAGATCCTCGAGGAGCACTACATCGCAGAGC TCGAAAGCGTCGCCAAGTCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14091:1180..1752-

>mRNA_P-wetherbeei_contig14091.1.1 ID=mRNA_P-wetherbeei_contig14091.1.1|Name=mRNA_P-wetherbeei_contig14091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig14091:1180..1752- (Phaeothamnion wetherbeei SAG_119_79)
GTCCCGTACAGCGACTTTGTCGGGCAGGTGGCCGGGGCACTGGGTTACCC
GCCGCCGGCCGGCTGCGGCGCCCCGCTCTGGCTGTGGCTGCTGGCGGTGA
CGGCCTGGCGGCTGCTGGCGCTGCTCCTCCGTCCGTTCTGCGCGCTGCGG
CTGCAACCGCCAGGCGCTGCCGCTGCCGTCGCCGCCGCGCGGCGCTTCCG
CGTCGACGACGCGCGCGCCCGCCACACGCTCGGTTACGCGCCGCTCTGGA
CCGCTGCTGAGGCTGCGGCGCTGACATTTTCCGACCCGCCGCGGCCGCTC
TGCAACCCCCAAGCCCGGGTCCGGCACGCAGGGCCGTTCCCGGCGGGGCA
GGTGAGCCGCCACGCCGCTGAGGACGACGCCTGGATCGTCGTGGACGGGA
AGGTGTTCGACGTGACGGCGTATGTGGATCAGCATCCCGGCGGAATGGCG
ATCCTGCGGAACGCTGGCGGCGACTCGTCGGCGGGCATGCACGGGCCGCA
GCACCCGGCGCAGGCCATGGAGATCCTCGAGGAGCACTACATCGCAGAGC
TCGAAAGCGTCGCCAAGTCTTGA
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