mRNA_P-wetherbeei_contig14090.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14090.2.1
Unique NamemRNA_P-wetherbeei_contig14090.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A7R9UY41_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UY41_DIALT)

HSP 1 Score: 74.3 bits (181), Expect = 7.310e-14
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:    7 SAWDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            +AW  A A P   T W  +V  AE  G +  +  A+   L ++PLCYGF+ ++AA     G A      +FERGVQA+    ELW AY       A+ P   +  R +  RA  AVG
Sbjct:   15 AAWTTARAQPTEPTHWTTVVGAAERLGDIAKIRTAYDELLSRYPLCYGFWNKYAALEKEHGDADASL-AVFERGVQAIGQSVELWCAYTSAYV--ATRPDDVDGARALHERAVAAVG 128
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A7R9TID4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TID4_MICPS)

HSP 1 Score: 73.6 bits (179), Expect = 9.430e-14
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:   19 AAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVH-VTERASAPRPYEEVREIFRRAADAVG 357
            A  A+  +F  W AL+   E    +E + A + AFL +FPLCYG++ ++A A  R      +T  ++ERGV AVP   +LW  Y  H V  RA A    + VR +F R    VG
Sbjct:    1 AVRADVGDFAAWTALIAAGEKTSSVEKIRAVYDAFLAEFPLCYGYWKKYADAETRLA-GGAKTGEVYERGVAAVPYSVDLWTHYCAHAVGARADA----DHVRGLFERGLAYVG 109
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: R7UUN7_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UUN7_CAPTE)

HSP 1 Score: 75.9 bits (185), Expect = 1.250e-13
Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:   13 WDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEE-VREIFRRAADAVG 357
            W     +P +FTGW  L++  E  G +EN  AAF AFL++FP CYG++ +++    +    S   + + E GV A+P   +LW  YI ++T +       E  +R ++ RA  A G
Sbjct:   29 WKTVRDDPSDFTGWTYLLQYVEQEGNIENGRAAFDAFLERFPYCYGYWKKYSDMEKKSDDPS-RVEEVLEAGVMAIPLSIDLWVHYIQYMTSKLKKATDRESLIRRLYERALAAAG 143
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A8J6CFT3_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFT3_DIALT)

HSP 1 Score: 74.3 bits (181), Expect = 4.440e-13
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:    7 SAWDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            +AW  A A P   T W  +V  AE  G +  +  A+   L ++PLCYGF+ ++AA     G A      +FERGVQA+    ELW AY       A+ P   +  R +  RA  AVG
Sbjct:    8 AAWTTARAQPTEPTHWTTVVGAAERLGDIAKIRTAYDELLSRYPLCYGFWNKYAALEKEHGDADASL-AVFERGVQAIGQSVELWCAYTSAYV--ATRPDDVDGARALHERAVAAVG 121
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A7I4FBE9_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4FBE9_PHYPA)

HSP 1 Score: 73.9 bits (180), Expect = 6.000e-13
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   13 WDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            W+    N  +F  W  L++ +E    +  +E A+ AFL QFPLCYG++ ++A    + G++    D ++ER V+AV    ++W  Y ++  E+   P   E +R +F R    VG
Sbjct:   75 WNILKENDADFNNWTVLIQESEKLEVISKIEKAYDAFLAQFPLCYGYWKKYADNEAKLGSSEKVVD-VYERAVKAVTYSVDMWMNYCIYAMEKFEDP---EAIRGLFERGVSFVG 185
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A2K1L9B4_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9B4_PHYPA)

HSP 1 Score: 73.9 bits (180), Expect = 6.020e-13
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   13 WDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            W+    N  +F  W  L++ +E    +  +E A+ AFL QFPLCYG++ ++A    + G++    D ++ER V+AV    ++W  Y ++  E+   P   E +R +F R    VG
Sbjct:   75 WNILKENDADFNNWTVLIQESEKLEVISKIEKAYDAFLAQFPLCYGYWKKYADNEAKLGSSEKVVD-VYERAVKAVTYSVDMWMNYCIYAMEKFEDP---EAIRGLFERGVSFVG 185
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A665XF51_ECHNA (Si:ch211-114c17.1 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665XF51_ECHNA)

HSP 1 Score: 72.4 bits (176), Expect = 2.010e-12
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 FASAWDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHV--TERASAPRPYEEVREIFRRAADAVG 357
            F   W AAH NP +FT W  L++  E    +     A  AFL ++PLCYG++ ++A    R G  +T+ + + E+G+QA+P   +LW  YI  +  T   + P   + +R +F  A  A G
Sbjct:   53 FERLWKAAHDNPHDFTSWTDLLQYCEQESHITASRRALVAFLARYPLCYGYWKKFADLERRAGN-NTKAEEVCEQGLQAIPLSVDLWIHYINLLLGTLDMNLPESPKRIRSVFEDAVAAAG 172
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A665XG19_ECHNA (Si:ch211-114c17.1 n=3 Tax=Carangaria TaxID=1489904 RepID=A0A665XG19_ECHNA)

HSP 1 Score: 72.4 bits (176), Expect = 2.070e-12
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1 
Query:    1 FASAWDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHV--TERASAPRPYEEVREIFRRAADAVG 357
            F   W AAH NP +FT W  L++  E    +     A  AFL ++PLCYG++ ++A    R G  +T+ + + E+G+QA+P   +LW  YI  +  T   + P   + +R +F  A  A G
Sbjct:   53 FERLWKAAHDNPHDFTSWTDLLQYCEQESHITASRRALVAFLARYPLCYGYWKKFADLERRAGN-NTKAEEVCEQGLQAIPLSVDLWIHYINLLLGTLDMNLPESPKRIRSVFEDAVAAAG 172
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A2K1L1J2_PHYPA (Uncharacterized protein n=8 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L1J2_PHYPA)

HSP 1 Score: 72.4 bits (176), Expect = 2.080e-12
Identity = 36/115 (31.30%), Postives = 61/115 (53.04%), Query Frame = 1 
Query:   13 WDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            W+    +  +F  W +L++ AE    L  VE  + AFL +FPLCYG++ ++A   ++ G++    D ++ER V+AV    ++W  Y  +  E+   P   E +R +F R    VG
Sbjct:   80 WNVVKEDAADFNSWTSLIQEAEKLEVLSKVEKTYDAFLAEFPLCYGYWKKYADHELKLGSSEKVVD-VYERAVKAVTYSVDMWMNYCTYAMEKFEDP---EAIRGLFERGISFVG 190
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BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Match: A0A388LUR0_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LUR0_CHABU)

HSP 1 Score: 71.6 bits (174), Expect = 3.870e-12
Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = 1 
Query:   13 WDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYGFYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASAPRPYEEVREIFRRAADAVG 357
            W    ANP +FT W  L++ AE    ++ +   +  FL +FPLCYG++ ++A    R G      + ++ER V+ V    ++W  Y   V E++       E+R +F R  D VG
Sbjct:   48 WSIVTANPADFTSWTLLIQEAERLDVIDKIRRVYDTFLAEFPLCYGYWKKYADHEGRHGHQEKIAE-VYERAVKGVTYSVDIWMHYCTFVAEKSE---DMGEIRRLFERGLDYVG 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14090.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UY41_DIALT7.310e-1436.75Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7R9TID4_MICPS9.430e-1437.72Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
R7UUN7_CAPTE1.250e-1333.62Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A8J6CFT3_DIALT4.440e-1336.75Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7I4FBE9_PHYPA6.000e-1331.30Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A2K1L9B4_PHYPA6.020e-1331.30Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A665XF51_ECHNA2.010e-1233.88Si:ch211-114c17.1 n=1 Tax=Echeneis naucrates TaxID... [more]
A0A665XG19_ECHNA2.070e-1233.88Si:ch211-114c17.1 n=3 Tax=Carangaria TaxID=1489904... [more]
A0A2K1L1J2_PHYPA2.080e-1231.30Uncharacterized protein n=8 Tax=Physcomitrium pate... [more]
A0A388LUR0_CHABU3.870e-1231.30Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14090contigP-wetherbeei_contig14090:1386..1742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8479.XP_005307947.1
PFAMsSuf
Model size357
Max annot lvl33208|Metazoa
KEGG koko:K13217
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000395,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1903311,GO:1990904
Exons1
Evalue1.27e-15
EggNOG OGsKOG1258@1|root,KOG1258@2759|Eukaryota,38HNQ@33154|Opisthokonta,3B992@33208|Metazoa,3CT5U@33213|Bilateria,486UC@7711|Chordata,499B6@7742|Vertebrata,4CD3P@8459|Testudines
DescriptionSuppressor of forked protein (Suf)
Cds size357
COG categoryA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.49531-CDS-P-wetherbeei_contig14090:1385..17421683186008.49531-CDS-P-wetherbeei_contig14090:1385..1742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14090 1386..1742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14090.2.1prot_P-wetherbeei_contig14090.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14090 1386..1742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14090.2.1

>prot_P-wetherbeei_contig14090.2.1 ID=prot_P-wetherbeei_contig14090.2.1|Name=mRNA_P-wetherbeei_contig14090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
FASAWDAAHANPLNFTGWVALVERAETAGPLENVEAAFSAFLQQFPLCYG
FYLRWAAASMRWGTASTETDPIFERGVQAVPSCPELWEAYIVHVTERASA
PRPYEEVREIFRRAADAVG
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mRNA from alignment at P-wetherbeei_contig14090:1386..1742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14090.2.1 ID=mRNA_P-wetherbeei_contig14090.2.1|Name=mRNA_P-wetherbeei_contig14090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig14090:1386..1742+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGAGCGCATGGGATGCGGCTCACGCCAATCCTCTCAACTTCACCGG
CTGGGTTGCCCTCGTCGAGCGCGCGGAAACAGCTGGGCCTTTGGAGAACG
TCGAAGCTGCTTTCAGCGCTTTCCTTCAGCAATTCCCTCTCTGCTACGGC
TTCTACCTGCGTTGGGCTGCCGCGTCCATGCGGTGGGGTACCGCCAGCAC
CGAGACCGACCCAATCTTTGAACGCGGGGTTCAGGCCGTTCCATCATGCC
CTGAGCTATGGGAAGCTTACATAGTCCACGTCACCGAGAGGGCGTCAGCG
CCGCGGCCCTATGAGGAGGTCCGGGAGATTTTCCGCCGTGCTGCCGATGC
CGTAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14090:1386..1742+

>mRNA_P-wetherbeei_contig14090.2.1 ID=mRNA_P-wetherbeei_contig14090.2.1|Name=mRNA_P-wetherbeei_contig14090.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig14090:1386..1742+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGCGAGCGCATGGGATGCGGCTCACGCCAATCCTCTCAACTTCACCGG
CTGGGTTGCCCTCGTCGAGCGCGCGGAAACAGCTGGGCCTTTGGAGAACG
TCGAAGCTGCTTTCAGCGCTTTCCTTCAGCAATTCCCTCTCTGCTACGGC
TTCTACCTGCGTTGGGCTGCCGCGTCCATGCGGTGGGGTACCGCCAGCAC
CGAGACCGACCCAATCTTTGAACGCGGGGTTCAGGCCGTTCCATCATGCC
CTGAGCTATGGGAAGCTTACATAGTCCACGTCACCGAGAGGGCGTCAGCG
CCGCGGCCCTATGAGGAGGTCCGGGAGATTTTCCGCCGTGCTGCCGATGC
CGTAGGC
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