mRNA_P-wetherbeei_contig14088.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14088.1.1
Unique NamemRNA_P-wetherbeei_contig14088.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A521YWY3_9PROT (DNA polymerase III subunit chi n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YWY3_9PROT)

HSP 1 Score: 194 bits (493), Expect = 2.250e-61
Identity = 88/137 (64.23%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDL 411
            MT+IDFYFNA+DR +VACRLAGKA AQ+K++LIY P AE A R+D MLWTW  + F+PHC AHDPLAA TPVLI +     P+C+VLLNLG + PP FER+ RLLE+V   + ER  GR RY+FY ERGY I NHDL
Sbjct:    1 MTSIDFYFNAEDRLQVACRLAGKALAQRKRMLIYAPEAEIASRVDRMLWTWPAIGFVPHCAAHDPLAADTPVLIASDPQTSPDCEVLLNLGAECPPHFERFERLLEVVSGEESERQAGRSRYRFYLERGYEIANHDL 137          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A1F4F9C5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F9C5_9PROT)

HSP 1 Score: 190 bits (482), Expect = 1.060e-59
Identity = 86/137 (62.77%), Postives = 102/137 (74.45%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDL 411
            MT+IDFYFNA DR +VACRLAGKA AQ+K++LIY P AE A R+D +LWTW  + F+PHC  HDPLA  TPVLI +    PP C+VLLNLG   PP FER+ RLLE+V  GD ER  GR RY++Y +RGY I NHDL
Sbjct:    1 MTSIDFYFNAADRLQVACRLAGKAVAQRKRMLIYAPEAEVASRVDRLLWTWPAIGFVPHCTLHDPLAPETPVLIASDPETPPGCEVLLNLGAGCPPHFERFERLLEVVSGGDSERQAGRSRYRYYLDRGYRIANHDL 137          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A1F4CWS2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CWS2_9PROT)

HSP 1 Score: 189 bits (480), Expect = 1.820e-59
Identity = 85/137 (62.04%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDL 411
            MT+IDFYFNA DR +VACRLAGKA AQK++LL+Y P  E+A RID MLWTW  + F+PHC  H+ L+A TPVLI +    PP C++LLNLG D PP FER+ RLLE+V TG+EER   R RY++Y+ERGY I +HDL
Sbjct:    1 MTSIDFYFNAADRLQVACRLAGKALAQKQRLLVYAPEPETASRIDRMLWTWPAIGFVPHCAVHERLSADTPVLIASGEETPPGCELLLNLGADCPPHFERFERLLEVVSTGEEERKAARARYRYYQERGYKISSHDL 137          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A537BLK9_9PROT (DNA polymerase III subunit chi n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537BLK9_9PROT)

HSP 1 Score: 182 bits (462), Expect = 1.220e-56
Identity = 85/143 (59.44%), Postives = 104/143 (72.73%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLAGRGAG 429
            MT+IDFYFNA+DR +VACRLAGKA A+ +++LIY P  E A+RID MLWTW  + F+PHC AHD LAA TPVLI +    PP C++LLNL  + PP F R+ RLLEIV    + R  GR RY++Y +RGY I NHDLA  GAG
Sbjct:    1 MTSIDFYFNAEDRLQVACRLAGKALARGQRMLIYAPEHEIAQRIDKMLWTWPAIGFVPHCAAHDALAAQTPVLIASGDEAPPGCELLLNLAAECPPHFARFERLLEIVAADADARKAGRSRYRYYVDRGYQIANHDLAAEGAG 143          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: UPI0019987E3E (DNA polymerase III subunit chi n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI0019987E3E)

HSP 1 Score: 181 bits (460), Expect = 2.300e-56
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPP-ECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLAG 417
            MT+IDFYFNA DR  VACRLAGKA  QKK++LIY P AE A++ID +LWT Q +SF+PHC AHDPLAA TP+LI + A+ P   C+VLLNL  + PPFFER+ RLLEIV   +++ + GR R+KFY++RGY + +HDLAG
Sbjct:    1 MTSIDFYFNAADRLGVACRLAGKALQQKKRVLIYAPQAELAQKIDRLLWTAQAVSFMPHCYAHDPLAAQTPILIASDAASPAASCEVLLNLSPECPPFFERHERLLEIVAKEEDQLAEGRARFKFYRDRGYAMRSHDLAG 140          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A0S8AYA3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AYA3_9PROT)

HSP 1 Score: 181 bits (459), Expect = 3.590e-56
Identity = 85/140 (60.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLAGR 420
            MTTIDFYFNA DR +VACRLAGKA AQ+K+LLIY P A++A+ ID +LWTW    F+PHC AHD LA  TPVLI + A  P   ++LLNL +  PP FER+ RLLE+VG  D+ R  GR RY++Y++RGYPI NHDL  R
Sbjct:    1 MTTIDFYFNAPDRLQVACRLAGKAHAQRKRLLIYAPQADTAQGIDRLLWTWPATGFVPHCFAHDALAQETPVLIASDALIPEAGELLLNLDERCPPHFERFERLLEVVGQDDDARREGRERYRYYRDRGYPIRNHDLTAR 140          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A1F3YEE1_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YEE1_9PROT)

HSP 1 Score: 178 bits (452), Expect = 4.170e-55
Identity = 89/139 (64.03%), Postives = 100/139 (71.94%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPP--ECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDL 411
            MT IDFYFNA DR  VACRLAGKA  Q  ++LIY P  E A+RID MLWT Q +SFIPHC  HDPLAASTPVLI      PP   C+VLLNL  D PPFFER+ RLLE+V   DE++  GR RY FY++RGY I NHDL
Sbjct:    1 MTAIDFYFNAGDRLGVACRLAGKALQQNMRVLIYAPQPELAQRIDRMLWTAQAVSFIPHCAVHDPLAASTPVLIAGGDGLPPGPACEVLLNLAADCPPFFERHERLLEVVARDDEDKRAGRARYAFYRDRGYAIRNHDL 139          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A1F4FDB2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4FDB2_9PROT)

HSP 1 Score: 178 bits (451), Expect = 5.550e-55
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLAGR 420
            MT IDFYFNADDR +VACRLAG+A A+ K++L+Y P  E+A+RID MLWTW  + F+PHC AHDPLA  TPVLI +    P  C++LLNL  + PP FER+ RLLE+V T   +R   R RY+ Y+ RGY + +HDLAG+
Sbjct:    1 MTEIDFYFNADDRMQVACRLAGQAIARNKRVLVYAPQPETAQRIDRMLWTWPAIGFVPHCAAHDPLAPDTPVLIASGTEVPEGCEMLLNLSAECPPHFERFDRLLEVVSTESADREGARARYREYRSRGYQVSHHDLAGQ 140          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A177QVZ6_9PROT (DNA polymerase III subunit chi n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QVZ6_9PROT)

HSP 1 Score: 175 bits (443), Expect = 8.060e-54
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLA 414
            MT IDFYFNA+DR +VACRLA KA +Q  ++LIY P  ++A R+D +LWTWQ   F+PHC  HD LAA TPVLI      P    VLLNL  + PP FER+ RL E+VG  DEE+  GRGRY++Y+ERGY I +HDLA
Sbjct:    1 MTNIDFYFNAEDRLQVACRLAAKAASQNTRMLIYAPDGDTASRVDKLLWTWQATGFVPHCAPHDALAAETPVLIAAGEEAPEGFAVLLNLSSECPPHFERFERLCELVGRDDEEKKSGRGRYRYYRERGYKITDHDLA 138          
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Match: A0A1F4FBH5_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FBH5_9PROT)

HSP 1 Score: 172 bits (435), Expect = 1.460e-52
Identity = 82/138 (59.42%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWTWQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFERYPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLA 414
            MTTIDFYFNA DR +VACRLAGKA  Q K+++IY P  E A+RID +LW W  ++F+PHC AHD LA  TPVLI  +A   P  +VLLNLG D P  FER+ RLLEIV   D +R   R RY +Y++RGY I NHDLA
Sbjct:    1 MTTIDFYFNAADRLQVACRLAGKALEQDKRVVIYAPQPELAQRIDRLLWCWPAIAFVPHCMAHDALADETPVLIAAEAGAAPAREVLLNLGTDCPESFERFERLLEIVSQDDADRKAARARYAWYRDRGYGIRNHDLA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14088.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YWY3_9PROT2.250e-6164.23DNA polymerase III subunit chi n=1 Tax=Betaproteob... [more]
A0A1F4F9C5_9PROT1.060e-5962.77Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4CWS2_9PROT1.820e-5962.04Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537BLK9_9PROT1.220e-5659.44DNA polymerase III subunit chi n=5 Tax=unclassifie... [more]
UPI0019987E3E2.300e-5661.43DNA polymerase III subunit chi n=1 Tax=Burkholderi... [more]
A0A0S8AYA3_9PROT3.590e-5660.71Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F3YEE1_9PROT4.170e-5564.03Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4FDB2_9PROT5.550e-5557.14Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A177QVZ6_9PROT8.060e-5457.97DNA polymerase III subunit chi n=1 Tax=Betaproteob... [more]
A0A1F4FBH5_9PROT1.460e-5259.42Uncharacterized protein n=2 Tax=unclassified Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14088contigP-wetherbeei_contig14088:220..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog323848.Nmul_A0745
Preferred nameholC
PFAMsDNA_pol3_chi
Model size432
Max annot lvl28216|Betaproteobacteria
KEGG rclassRC02795
KEGG koko:K02339
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.8e-40
EggNOG OGsCOG2927@1|root,COG2927@2|Bacteria,1MZ3V@1224|Proteobacteria,2VTYC@28216|Betaproteobacteria,373BG@32003|Nitrosomonadales
EC2.7.7.7
DescriptionDNA polymerase III (Chi subunit)
Cds size432
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186008.2005088-CDS-P-wetherbeei_contig14088:219..6511683186008.2005088-CDS-P-wetherbeei_contig14088:219..651Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14088 220..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14088.1.1prot_P-wetherbeei_contig14088.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14088 220..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14088.1.1

>prot_P-wetherbeei_contig14088.1.1 ID=prot_P-wetherbeei_contig14088.1.1|Name=mRNA_P-wetherbeei_contig14088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MTTIDFYFNADDRFEVACRLAGKACAQKKKLLIYVPAAESARRIDNMLWT
WQPLSFIPHCQAHDPLAASTPVLITTQASDPPECDVLLNLGDDYPPFFER
YPRLLEIVGTGDEERSRGRGRYKFYKERGYPIGNHDLAGRGAG*
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mRNA from alignment at P-wetherbeei_contig14088:220..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14088.1.1 ID=mRNA_P-wetherbeei_contig14088.1.1|Name=mRNA_P-wetherbeei_contig14088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig14088:220..651+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACGATCGACTTCTACTTCAACGCCGACGACCGCTTCGAGGTCGC CTGCCGGCTGGCCGGCAAGGCGTGCGCGCAGAAGAAGAAGCTGCTGATCT ACGTACCCGCGGCGGAAAGTGCCCGCAGGATAGACAACATGCTCTGGACC TGGCAGCCGCTGTCCTTCATCCCGCATTGCCAGGCACACGACCCGCTGGC CGCCAGCACGCCCGTGCTGATCACCACACAGGCCTCCGACCCGCCGGAAT GCGACGTGCTGCTGAACCTCGGTGACGACTACCCGCCGTTCTTCGAGCGC TACCCGCGCCTGCTTGAGATCGTGGGTACCGGAGACGAGGAGCGCAGCCG CGGCCGCGGCCGCTACAAGTTCTACAAGGAGCGCGGCTACCCGATCGGCA ATCACGACCTTGCGGGCCGGGGGGCGGGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14088:220..651+

>mRNA_P-wetherbeei_contig14088.1.1 ID=mRNA_P-wetherbeei_contig14088.1.1|Name=mRNA_P-wetherbeei_contig14088.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig14088:220..651+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCACGATCGACTTCTACTTCAACGCCGACGACCGCTTCGAGGTCGC
CTGCCGGCTGGCCGGCAAGGCGTGCGCGCAGAAGAAGAAGCTGCTGATCT
ACGTACCCGCGGCGGAAAGTGCCCGCAGGATAGACAACATGCTCTGGACC
TGGCAGCCGCTGTCCTTCATCCCGCATTGCCAGGCACACGACCCGCTGGC
CGCCAGCACGCCCGTGCTGATCACCACACAGGCCTCCGACCCGCCGGAAT
GCGACGTGCTGCTGAACCTCGGTGACGACTACCCGCCGTTCTTCGAGCGC
TACCCGCGCCTGCTTGAGATCGTGGGTACCGGAGACGAGGAGCGCAGCCG
CGGCCGCGGCCGCTACAAGTTCTACAAGGAGCGCGGCTACCCGATCGGCA
ATCACGACCTTGCGGGCCGGGGGGCGGGTTGA
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