mRNA_P-wetherbeei_contig1408.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI) HSP 1 Score: 225 bits (573), Expect = 6.830e-64 Identity = 121/241 (50.21%), Postives = 175/241 (72.61%), Query Frame = 1
Query: 10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIM--TYVSPGG-----GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
II NT+ LA+D +P+ E+ + +D NLVFT FALEMA+ L A+G R Y ++ FN+FDG++VLSSL++L + + GG GGG+SALR+FR+LR+ KLAR W S++ +L + +T+L IGNFA+LL LF++IY LIG++FFAN LHF G + I ++GY +A+VPR+NFD +L A TTVF+VL+ +NWN ++ +AVG ++ YF+SL++ G IVM+ FLAILLS+F +
Sbjct: 233 IILNTLTLALDHHPMDEEFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPDILTGGDGEDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHF-AEDGRVIGIGEEGYYDAEVPRSNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVFYFVSLIIVGMMIVMSLFLAILLSHFAT 472
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.290e-63 Identity = 121/241 (50.21%), Postives = 174/241 (72.20%), Query Frame = 1
Query: 10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIM--TYVSPGG-----GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
II NT+ LA+D +P+ + + +D NLVFT FALEMA+ L A+G R Y ++ FN+FDG++VLSSL++L + + GG GGG+SALR+FR+LR+ KLAR W S++ +L + +T+L IGNFA+LL LF++IY LIG++FFAN LHF G + I ++GY +A VPR+NFD +L A TTVF+VL+ +NWN ++ +AVG ++ +YF+SL+V G IVM+ FLAILLS+F +
Sbjct: 619 IILNTLTLALDHHPMDDDFSTVLDLLNLVFTLCFALEMALKLVALGPRGYAKDKFNLFDGLVVLSSLVELAIWPPNILTGGEGEDWGGGLSALRSFRVLRILKLARGWSSMRDLLETLRKTLLDIGNFALLLLLFMFIYVLIGVQFFANRLHF-AEDGRVIGIGEEGYYDAKVPRSNFDTLLHAFTTVFEVLSGENWNATMYSARRAVGWVSVIYFVSLIVVGMMIVMSLFLAILLSHFAT 858
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A7S2PB29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB29_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.770e-63 Identity = 109/240 (45.42%), Postives = 161/240 (67.08%), Query Frame = 1
Query: 1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGG--GGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
M I NT++LA D Y I ++ + ++ N+V T +F LEM ++LA +G R Y N F++FD IV++SL++L + + + GG+SALR A+ W+S+ +L M TVL++GNF +LL L +YIYAL+GM+FFAN +HFD TG + I + GYE AD+PR+NFD ++W+ TTVFQ+LT +NWN ++++ +A A +YF+SL+VFG FIVMN FLAIL+ NF+
Sbjct: 473 MVCIFINTIILACDHYGITDEFSAFLEIVNIVLTFIFFLEMCLSLAGLGMRMYLSNPFSIFDAFIVITSLVELGLVFSASDRKEAGGLSALRXXXXXXXXXXAKNWKSIHALLETMYETVLEVGNFTLLLLLMMYIYALVGMQFFANRMHFDSGTGAAIQIGESGYENADIPRSNFDSLVWSMTTVFQILTGENWNSVMYDGRRATSGAAVLYFLSLVVFGVFIVMNLFLAILIGNFQDN 712
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A2D4C0A0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0A0_PYTIN) HSP 1 Score: 214 bits (546), Expect = 2.950e-60 Identity = 114/243 (46.91%), Postives = 164/243 (67.49%), Query Frame = 1
Query: 1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMT---YVSPGGG---GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFES 711
M I ANT+VLA+D YP+P +++ N + VF LEM + L +G + Y ++ FN+FD IV +++ + T ++S GGVSALR+FRL RVFKLAR W SL+ +L + R V IGNFA+LL++FIYIYALIG++FFAN L FD G P++ D + + VPRNNFD +LWA TVFQV++ +NWN ++++ + G A +YFISL++FG F++M+ FLA+LL NF++
Sbjct: 445 MVVITANTIVLALDHYPMPPALDNDLEIINFGLSCVFLLEMVLKLFGLGLKQYARDQFNIFDAFIVTMGVLETVATPPSFLSSSNTTKRGGVSALRSFRLFRVFKLARNWSSLRELLALIVRAVASIGNFAVLLSIFIYIYALIGLQFFANTLRFDK-DGYPINNKDPTFWQGTVPRNNFDSLLWAVQTVFQVISGENWNNIMYDGIRGNGFAASLYFISLVMFGDFVLMSLFLALLLDNFDT 686
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A8K1CR88_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR88_PYTOL) HSP 1 Score: 211 bits (538), Expect = 3.540e-59 Identity = 111/244 (45.49%), Postives = 160/244 (65.57%), Query Frame = 1
Query: 1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGGG------GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
M I+ANT +LA+D YP+P +++ N + VF LEM + L +G R Y ++ FNVFD +V++ L++ I T S G VSALR+FRL RVFKLAR WRSL+ +L+ + R V I NF +LL LFIYIYALIG++ F N + FD G + + + E ++PRNNFD +LW+ TVFQV+T +NWN ++++ ++ G I +YF+SL++ G+FI+MN FLA+LL NF +E
Sbjct: 704 MLAIVANTTILALDHYPMPPGLDSDLEIVNFGLSCVFMLEMVLKLIGLGLRQYARDKFNVFDAFVVITGLLETIATPPSFMSSNVKKKKGAVSALRSFRLSRVFKLARNWRSLRELLQLIARAVASIANFGVLLFLFIYIYALIGLQIFGNTMRFDDE-GYAIPMDSPTFWEGELPRNNFDTLLWSMITVFQVITGENWNSIMYDVLRSNGMIGALYFVSLIILGNFILMNLFLALLLDNFSTE 946
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A5D6XXB3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXB3_9STRA) HSP 1 Score: 208 bits (529), Expect = 5.640e-58 Identity = 111/243 (45.68%), Postives = 159/243 (65.43%), Query Frame = 1
Query: 1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVS-----PGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
M I+ANTVVLA+D +P+P E+++ N + +F +EM + L +G R Y ++ N+FD IVLS +++LI T S P G VSALRT R KLAR W+S + +L + V I NFA+L+ LFIYIYALIG++FFAN + +D + G P + D + E +VPRNNFD +LW+ TVFQV+T +NWN ++++ + G A VYFISL++FG+F++MN FLA+LL NF +
Sbjct: 480 MGAILANTVVLALDHHPMPPTLDEDLEIINFGLSCIFIIEMVLKLFGLGLRQYARDRMNLFDAFIVLSGVLELITTPPSFLSDNPPKKGAVSALRTLRXXXXXKLARNWKSFRDLLAMISDAVASIANFAVLMFLFIYIYALIGIQFFANTMRYD-SNGFPTAKHDISFWEGEVPRNNFDTLLWSGVTVFQVITGENWNNIMYDTIRGNGMAACVYFISLVIFGNFVLMNLFLALLLDNFSID 721
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A812PGF5_9DINO (CACNA1I protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PGF5_9DINO) HSP 1 Score: 207 bits (526), Expect = 8.450e-58 Identity = 111/246 (45.12%), Postives = 163/246 (66.26%), Query Frame = 1
Query: 10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVG-WRAYWQNAFNVFDGVIVLSSLIDLIM---------TYVSPGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLS-ITDDGYEEA--DVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
I+ NT +LA D YP+ + ++ A V T +F EM V +A +G WR + + FNVFD +IV++SL++L++ T GGG+SALRT RL R+F LA++WRSL+ ++ M RT+ + FA+LL LF++I++LIGM+FFAN L FDP TG+P G A + PR +FD I WA VFQVL+ +NWN ++++CW+AVG A +YF++L+V G+F+++N FLAI+L NFE
Sbjct: 685 IVVNTCILAADHYPMDPDVSGALELAGFVLTLIFTAEMCVKVAGLGPWR-FIKAPFNVFDAIIVIASLVELVLAPPAFLTATTEDVASAGGGISALRTLRLFRLFALAKQWRSLRVLIDTMLRTLKDVAYFAVLLLLFLFIFSLIGMQFFANQLCFDPGTGLPSEEFQGSGSCPAPFERPRAHFDNIFWAFLAVFQVLSEENWNAIMYDCWRAVGWPATIYFVALVVVGNFVLLNLFLAIVLGNFE 929
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A6A3UMN1_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UMN1_9STRA) HSP 1 Score: 207 bits (526), Expect = 1.410e-57 Identity = 111/245 (45.31%), Postives = 166/245 (67.76%), Query Frame = 1
Query: 4 AFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMTYVSPGG--GGGVSA-------LRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPL-SITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
A I+ NTV+L++D+YP+ E+ T +D N V T +F LE V + +G++ + ++ +N+FD ++V+ +++ I VSP G V A LR+ R+ R+FKLAR W SLQ ++R + V ++GNF++ L LF+Y+YAL+GM+ F N FD + G+PL S D E VPR NFD +LW+ TVFQVLT +NWN +LF+ W++ G++A +YFISL++FG+FIV+N FLAILLS+FE
Sbjct: 284 ALILLNTVLLSLDQYPVDEELTSIVDVINFVLTQIFLLEALVKVFGLGFQRWAEDRYNLFDALVVVLGIVEAI---VSPPQFLSGSVHAKSQSFAGLRSMRIFRLFKLARSWPSLQKLIRLIANAVSEVGNFSVFLLLFMYVYALLGMQIFGNRFRFD-SNGIPLTSPAADMDSEIYVPRANFDSLLWSGVTVFQVLTGENWNNVLFDGWRSTGSVALLYFISLVIFGNFIVLNLFLAILLSHFE 524
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A5A8D9W3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9W3_CAFRO) HSP 1 Score: 207 bits (526), Expect = 1.480e-57 Identity = 111/246 (45.12%), Postives = 163/246 (66.26%), Query Frame = 1
Query: 10 IIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVG-WRAYWQNAFNVFDGVIVLSSLIDLIM---------TYVSPGGGGGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLS-ITDDGYEEA--DVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFE 708
I+ NT +LA D YP+ + ++ A V T +F EM V +A +G WR + + FNVFD +IV++SL++L++ T GGG+SALRT RL R+F LA++WRSL+ ++ M RT+ + FA+LL LF++I++LIGM+FFAN L FDP TG+P G A + PR +FD I WA VFQVL+ +NWN ++++CW+AVG A +YF++L+V G+F+++N FLAI+L NFE
Sbjct: 1303 IVVNTCILAADHYPMDPDVSGALELAGFVLTLIFTAEMCVKVAGLGPWR-FIKAPFNVFDAIIVIASLVELVLAPPAFLTATTEDVASAGGGISALRTLRLFRLFALAKQWRSLRVLIDTMLRTLKDVAYFAVLLLLFLFIFSLIGMQFFANQLCFDPGTGLPSEEFQGSGSCPAPFERPRAHFDNIFWAFLAVFQVLSEENWNAIMYDCWRAVGWPATIYFVALVVVGNFVLLNLFLAIVLGNFE 1547
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Match: A0A833TFH4_PHYIN (Ion transport protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TFH4_PHYIN) HSP 1 Score: 203 bits (516), Expect = 1.770e-56 Identity = 108/243 (44.44%), Postives = 158/243 (65.02%), Query Frame = 1
Query: 1 MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWRAYWQNAFNVFDGVIVLSSLIDLIMT---YVSPGGG--GGVSALRTFRLLRVFKLARRWRSLQTVLRAMGRTVLQIGNFAMLLALFIYIYALIGMEFFANHLHFDPATGVPLSITDDGYEEADVPRNNFDGILWASTTVFQVLTRDNWNELLFECWKAVGAIAPVYFISLMVFGSFIVMNTFLAILLSNFESE 714
M I ANT VL+MD YP+ + +++ N T VF EM + +A +G Y ++ FN+FD +VL L+++ ++ ++S G V++LR+FRLLRVFKLAR W+SL+ +L +GR + I NF +LL +FIYIYAL+GM+FF N + FD + G P Y VPR +FD LW++ TVF+++T DNWNE ++ ++ G A +Y ISL+VFG+FI+MN FLA+LL NF S+
Sbjct: 84 MCAIFANTAVLSMDHYPMSDTMDADLEIINFALTCVFVAEMIMKVAGLGIHLYTRDKFNLFDAFVVLMGLLEMALSPPSFMSENQPKKGSVASLRSFRLLRVFKLARSWKSLRELLEMVGRALASIANFGVLLFIFIYIYALVGMQFFGNTMRFD-SNGYPTPYNIYDYWSGTVPRLHFDTFLWSAITVFKIITTDNWNEDMYNVIRSSGMFAALYTISLIVFGNFIMMNLFLALLLDNFSSD 325 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1408.1.1 >prot_P-wetherbeei_contig1408.1.1 ID=prot_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=238bp MAFIIANTVVLAMDRYPIPEQQTENMDRANLVFTAVFALEMAVTLAAVGWback to top mRNA from alignment at P-wetherbeei_contig1408:2430..4168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1408.1.1 ID=mRNA_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1739bp|location=Sequence derived from alignment at P-wetherbeei_contig1408:2430..4168- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1408:2430..4168- >mRNA_P-wetherbeei_contig1408.1.1 ID=mRNA_P-wetherbeei_contig1408.1.1|Name=mRNA_P-wetherbeei_contig1408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=714bp|location=Sequence derived from alignment at P-wetherbeei_contig1408:2430..4168- (Phaeothamnion wetherbeei SAG_119_79)back to top |