mRNA_P-wetherbeei_contig14061.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14061.1.1
Unique NamemRNA_P-wetherbeei_contig14061.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A0S7I0R7_9TELE (ACOX1 n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7I0R7_9TELE)

HSP 1 Score: 59.7 bits (143), Expect = 1.200e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            +N D+ RER  +S ++E + N+LDGG +KT+RRR + E V S+P F   D   L+R ER+ +A+R
Sbjct:    1 MNPDITRERQNASFDVEKLTNILDGGPEKTKRRRQIEELVFSDPDFNEDDPNFLSRSERYDQAVR 65
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A7S2YCH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCH3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.210e-9
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEP--LFCNSDNIHLTRVERFGRAL 195
            +N DL+RER  ++ + E + NL+DGG D+TRRRR L   +  +P  +F N DN +L R +R  R+L
Sbjct:    1 MNPDLQRERGTATFSTEKITNLMDGGVDRTRRRRQLEAVIARDPTGIFSNDDNYYLHRTDRHVRSL 66
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A226PMA1_COLVI (Acyl-CoA_ox_N domain-containing protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226PMA1_COLVI)

HSP 1 Score: 57.4 bits (137), Expect = 3.670e-9
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 MVNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            M+NADL RER  ++   E + ++LDGGA++TRRR+ +   V ++P F + D   L+R +R+ +A+R
Sbjct:    1 MMNADLRRERAAATFQPELLTHVLDGGAERTRRRKEIEALVINDPDFQHEDLNFLSRSQRYEQAIR 66
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A0E9WAF7_ANGAN (Acyl-CoA_ox_N domain-containing protein n=1 Tax=Anguilla anguilla TaxID=7936 RepID=A0A0E9WAF7_ANGAN)

HSP 1 Score: 57.4 bits (137), Expect = 4.210e-9
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            +N D+ RER  +S N E + N+LDGGA+KT+RRR +   V S+P F + D   L+R ER+  A++
Sbjct:    1 MNPDILRERGNASFNTEILTNILDGGAEKTQRRREIENMVISDPDFQHEDLNFLSRSERYDAAVK 65
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: UPI00189C953E (peroxisomal acyl-coenzyme A oxidase 1 isoform X3 n=1 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189C953E)

HSP 1 Score: 59.7 bits (143), Expect = 8.080e-9
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            +N D+ +ER  +S N+E + N+LDGG +KTRRRR +   V S+P F   D   L+R ER+ +A+R
Sbjct:    1 MNPDIMKERQNASFNVEKLTNILDGGPEKTRRRREIESLVVSDPDFKEEDPNFLSRSERYDQAVR 65
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A8C1ZJL6_CYPCA (Acyl-coenzyme A oxidase n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1ZJL6_CYPCA)

HSP 1 Score: 59.7 bits (143), Expect = 8.090e-9
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    1 MVNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            ++N D+ RER  +S N E + N+LDGGA+KTRRRR +   V  +P F + D   L+R ER+  A+R
Sbjct:   35 VMNPDISRERENASFNPEILTNILDGGAEKTRRRREIESLVIGDPDFQHEDLNFLSRSERYDAAVR 100
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A7K7WQB0_9AVES (ACOX1 oxidase (Fragment) n=18 Tax=Aves TaxID=8782 RepID=A0A7K7WQB0_9AVES)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-8
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 MVNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            ++NADL RER  ++   E + N+LDGGA++TRRRR +   V ++P F + D   L+R +R+ +A+R
Sbjct:    5 VMNADLRRERAAATFQPELLTNVLDGGAERTRRRREIEALVINDPDFQHEDLNFLSRSQRYEQAIR 70
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: A0A8B9UH82_9AVES (Acyl-CoA oxidase 1 n=1 Tax=Anas zonorhyncha TaxID=75864 RepID=A0A8B9UH82_9AVES)

HSP 1 Score: 57.8 bits (138), Expect = 1.680e-8
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 MVNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            M+NADL RER  ++   E + ++LDGGA++TRRR+ +   V ++P F + D   L+R +R+ +A+R
Sbjct:    1 MMNADLRRERAAATFQPELLTHILDGGAERTRRRKEIEALVINDPDFQHEDLNFLSRSQRYEQAIR 66
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: F1R3V9_DANRE (Acyl-coenzyme A oxidase n=33 Tax=Cyprinoidei TaxID=30727 RepID=F1R3V9_DANRE)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            +N D+ RER  +S N+E + N+LDGGA+KT RRR +   V  +P F + D   L+R ER+  A+R
Sbjct:    1 MNPDISRERENASFNLEILTNVLDGGAEKTNRRREIESLVIGDPDFQHEDLNFLSRSERYDAAVR 65
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BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Match: F1R071_DANRE (Acyl-coenzyme A oxidase n=12 Tax=Cyprinoidei TaxID=30727 RepID=F1R071_DANRE)

HSP 1 Score: 58.5 bits (140), Expect = 2.070e-8
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    4 VNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNSDNIHLTRVERFGRALR 198
            +N D+ RER  +S N+E + N+LDGGA+KT RRR +   V  +P F + D   L+R ER+  A+R
Sbjct:    1 MNPDISRERENASFNLEILTNVLDGGAEKTNRRREIESLVIGDPDFQHEDLNFLSRSERYDAAVR 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14061.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7I0R7_9TELE1.200e-944.62ACOX1 n=2 Tax=Poeciliinae TaxID=586240 RepID=A0A0S... [more]
A0A7S2YCH3_9STRA1.210e-943.94Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A226PMA1_COLVI3.670e-940.91Acyl-CoA_ox_N domain-containing protein n=1 Tax=Co... [more]
A0A0E9WAF7_ANGAN4.210e-944.62Acyl-CoA_ox_N domain-containing protein n=1 Tax=An... [more]
UPI00189C953E8.080e-944.62peroxisomal acyl-coenzyme A oxidase 1 isoform X3 n... [more]
A0A8C1ZJL6_CYPCA8.090e-945.45Acyl-coenzyme A oxidase n=4 Tax=Cyprinus carpio Ta... [more]
A0A7K7WQB0_9AVES1.510e-842.42ACOX1 oxidase (Fragment) n=18 Tax=Aves TaxID=8782 ... [more]
A0A8B9UH82_9AVES1.680e-840.91Acyl-CoA oxidase 1 n=1 Tax=Anas zonorhyncha TaxID=... [more]
F1R3V9_DANRE2.070e-844.62Acyl-coenzyme A oxidase n=33 Tax=Cyprinoidei TaxID... [more]
F1R071_DANRE2.070e-844.62Acyl-coenzyme A oxidase n=12 Tax=Cyprinoidei TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14061contigP-wetherbeei_contig14061:1548..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog10160.XP_004630173.1
Preferred nameACOX1
PFAMsACOX,Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_ox_N
Model size198
Max annot lvl33208|Metazoa
KEGG rclassRC00052,RC00076
KEGG koko:K00232
KEGG ReactionR01175,R01279,R03777,R03857,R03990,R04751,R04754,R07888,R07892,R07896,R07934,R07950
KEGG Pathwayko00071,ko00592,ko01040,ko01100,ko01110,ko01212,ko03320,ko04024,ko04146,map00071,map00592,map01040,map01100,map01110,map01212,map03320,map04024,map04146
KEGG ModuleM00087,M00113
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0003995,GO:0003997,GO:0005102,GO:0005488,GO:0005504,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006690,GO:0006692,GO:0006693,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009062,GO:0009987,GO:0010817,GO:0015031,GO:0015833,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016137,GO:0016138,GO:0016401,GO:0016491,GO:0016559,GO:0016627,GO:0016634,GO:0017144,GO:0019216,GO:0019222,GO:0019395,GO:0019748,GO:0019752,GO:0019904,GO:0019953,GO:0022414,GO:0030165,GO:0030258,GO:0031090,GO:0031406,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032787,GO:0033036,GO:0033293,GO:0033365,GO:0033539,GO:0033540,GO:0033559,GO:0034440,GO:0034613,GO:0036094,GO:0036109,GO:0042445,GO:0042446,GO:0042579,GO:0042592,GO:0042632,GO:0042802,GO:0042803,GO:0042810,GO:0042811,GO:0042886,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045184,GO:0046395,GO:0046907,GO:0046983,GO:0047485,GO:0048037,GO:0048232,GO:0048285,GO:0048609,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0055088,GO:0055092,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071949,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901135,GO:1901137,GO:1901265,GO:1901363,GO:1901568,GO:1901575,GO:1901576,GO:1901657,GO:1901659,GO:1904069,GO:1904070
Exons1
Evalue1.32e-09
EggNOG OGsCOG1960@1|root,KOG0136@2759|Eukaryota,38BTU@33154|Opisthokonta,3BATK@33208|Metazoa,3CV9T@33213|Bilateria,48AZK@7711|Chordata,48V4I@7742|Vertebrata,3JAXB@40674|Mammalia,35EUN@314146|Euarchontoglires,4Q3P6@9989|Rodentia
EC1.3.3.6
Descriptionfatty acid beta-oxidation using acyl-CoA oxidase
Cds size198
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.4753554-CDS-P-wetherbeei_contig14061:1547..17451683186007.4753554-CDS-P-wetherbeei_contig14061:1547..1745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14061 1548..1745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14061.1.1prot_P-wetherbeei_contig14061.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14061 1548..1745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14061.1.1

>prot_P-wetherbeei_contig14061.1.1 ID=prot_P-wetherbeei_contig14061.1.1|Name=mRNA_P-wetherbeei_contig14061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MVNADLERERLCSSINMEAVCNLLDGGADKTRRRRALRERVESEPLFCNS
DNIHLTRVERFGRALR
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mRNA from alignment at P-wetherbeei_contig14061:1548..1745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14061.1.1 ID=mRNA_P-wetherbeei_contig14061.1.1|Name=mRNA_P-wetherbeei_contig14061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig14061:1548..1745+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAACGCCGACCTCGAACGCGAGCGCCTCTGTAGCTCCATCAACAT
GGAGGCCGTGTGCAACCTGCTCGACGGCGGCGCTGACAAGACACGGCGGA
GGCGGGCCCTGCGGGAGCGTGTCGAGTCCGAGCCCCTTTTTTGCAACTCG
GACAACATCCATTTGACAAGGGTGGAGCGCTTCGGGCGTGCTCTCCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14061:1548..1745+

>mRNA_P-wetherbeei_contig14061.1.1 ID=mRNA_P-wetherbeei_contig14061.1.1|Name=mRNA_P-wetherbeei_contig14061.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig14061:1548..1745+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAACGCCGACCTCGAACGCGAGCGCCTCTGTAGCTCCATCAACAT
GGAGGCCGTGTGCAACCTGCTCGACGGCGGCGCTGACAAGACACGGCGGA
GGCGGGCCCTGCGGGAGCGTGTCGAGTCCGAGCCCCTTTTTTGCAACTCG
GACAACATCCATTTGACAAGGGTGGAGCGCTTCGGGCGTGCTCTCCGA
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