mRNA_P-wetherbeei_contig14060.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14060.1.1
Unique NamemRNA_P-wetherbeei_contig14060.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.040e-94
Identity = 156/185 (84.32%), Postives = 167/185 (90.27%), Query Frame = 1 
Query:   10 RLYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            RL+  N + L+ GC+AIQSLES LNGLLG++R+TAG  AM+ALPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRI++G    TLPHF   SLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSEQTIIQFVYGDDGLNP+ ME
Sbjct:  778 RLFNNNRMPLKPGCDAIQSLESELNGLLGKLRETAGTGAMKALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGLNPSCME 962
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2RW98_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RW98_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.870e-93
Identity = 135/179 (75.42%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:   28 SLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            +L L+ GCN +QSLE  LNG+LG++R++AGQEAMR LPW N+PRIMAECGSKGSPLN+SQM+ACVGQQ+VGG RI+DG    TLPHF   SL P AKGFVANSFY+GL  TEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS++YD TVRNSE  ++QF+YGDD LNP++ME
Sbjct:    1 TLELRPGCNLLQSLEEILNGILGKLRESAGQEAMRTLPWSNTPRIMAECGSKGSPLNVSQMMACVGQQAVGGLRIQDGFVNRTLPHFQYHSLIPPAKGFVANSFYTGLAPTEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLRYDSTVRNSENMVVQFIYGDDYLNPSMME 179
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 302 bits (773), Expect = 7.250e-92
Identity = 151/183 (82.51%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:   16 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            Y +  L L+AGCNA QSLES LNG+LGE+R+TAG  AM+ LPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIE+G    TLPHF T SL+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE  ++QFVYGDDGL+P  ME
Sbjct:  757 YRKGQLELKAGCNAEQSLESSLNGVLGELRRTAGDMAMKELPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIENGFVKRTLPHFVTSSLYPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDATVRNSEGAVVQFVYGDDGLSPQCME 939
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2FN88_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FN88_9STRA)

HSP 1 Score: 280 bits (716), Expect = 9.480e-92
Identity = 137/183 (74.86%), Postives = 157/183 (85.79%), Query Frame = 1 
Query:   16 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            + R  L L+ GCNA+QSLES L G+LG++R+ AG+ AM  LPW N+PRIMAECGSKGS +NISQMIAC+GQQ+V GKRI++G    TLPHF   SL+PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTA+TGYMARRLMKALEDLSM YD +VRNSE T++QF YGDDGL+PA ME
Sbjct:   74 FNRGRLELKPGCNALQSLESELTGVLGKVREAAGKMAMEKLPWENAPRIMAECGSKGSTINISQMIACLGQQAVDGKRIQNGFVNRTLPHFKPDSLYPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAQTGYMARRLMKALEDLSMHYDNSVRNSESTVVQFTYGDDGLDPASME 256
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.330e-89
Identity = 148/170 (87.06%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:   55 AIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            +I+SLES LNGLLG++R+TAG  AM+ALPW NSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRI++G    TLPHF   SLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSEQTIIQFVYGDDGLNP+ ME
Sbjct:  834 SIKSLESELNGLLGKLRETAGTGAMKALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHFEANSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDRTVRNSEQTIIQFVYGDDGLNPSCME 1003
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S2Q495_9STRA (DNA-directed RNA polymerase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q495_9STRA)

HSP 1 Score: 285 bits (730), Expect = 6.620e-89
Identity = 139/183 (75.96%), Postives = 160/183 (87.43%), Query Frame = 1 
Query:   16 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            YE  +L L+ GC+ +QSLE  LNG+LG++R++AGQEAM+ALPW N+PRIMAECGSKGSPLNISQM+ACVGQQ+VGGKRI+DG    TLPHF   SL P AKGFVANSFYSGLTATEF FHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS++YD +VRNSE T++QF YGDD L+P+ ME
Sbjct:  130 YEDGTLELRPGCDLLQSLEEILNGILGKLRESAGQEAMKALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGKRIQDGFVNRTLPHFQYHSLIPPAKGFVANSFYSGLTATEFIFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSLRYDNSVRNSENTVVQFTYGDDSLDPSKME 312
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S4NGV3_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGV3_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.560e-87
Identity = 142/183 (77.60%), Postives = 159/183 (86.89%), Query Frame = 1 
Query:   16 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            Y+  +L L+ GCN IQSLE  LNG LG++R++AGQEAM+ALPW N+PR+MAECGSKGSPLNISQMI+CVGQQ+VGG RIE+G    TLPHF   SL PAAKGFVANSFY+GLT TEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD +VRNSE  ++QFVYGDD LNP LME
Sbjct:  756 YDAGTLELRPGCNLIQSLEEMLNGTLGKLRESAGQEAMKALPWSNTPRVMAECGSKGSPLNISQMISCVGQQAVGGNRIENGFVHRTLPHFEYHSLTPAAKGFVANSFYTGLTPTEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDNSVRNSENVVVQFVYGDDSLNPQLME 938
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A1E7FAF7_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAF7_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.950e-87
Identity = 142/184 (77.17%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:   13 LYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            LYE+  L L+ GCN +QSLE  LNG+LG +R++AGQEAM+ LPW N+PRIMA CGSKGSPLNISQMI+CVGQQ+VGG RI++G    TLPHF   SL P+AKGFVANSFY+GLTATEFFFH MGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE T++QFVYGDDGLNP  ME
Sbjct:  743 LYEKGELELRPGCNLLQSLEEILNGILGRLRESAGQEAMKQLPWSNAPRIMASCGSKGSPLNISQMISCVGQQAVGGLRIQNGFVDRTLPHFEINSLTPSAKGFVANSFYTGLTATEFFFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDKTVRNSENTVVQFVYGDDGLNPNQME 926
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A448Z7A2_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7A2_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.590e-87
Identity = 141/184 (76.63%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:   13 LYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            LYE   L L+ GC+ +QSLE  LNG+LG +R++AGQEAM+ LPW N+PRIMA CGSKGSPLNISQMI+CVGQQ+VGG RI++G    TLPHF  KSL P+AKGFVANSFY+GLTATEFFFH MGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYD TVRNSE T++QF+YGDDGLNP  ME
Sbjct:  750 LYENGELELRPGCDLLQSLEEILNGILGRLRESAGQEAMKQLPWSNAPRIMAACGSKGSPLNISQMISCVGQQAVGGMRIQNGFVDRTLPHFEVKSLTPSAKGFVANSFYTGLTATEFFFHAMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDKTVRNSENTVVQFIYGDDGLNPNAME 933
[Close]
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Match: A0A7S1FY33_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY33_9STRA)

HSP 1 Score: 288 bits (736), Expect = 8.790e-87
Identity = 142/183 (77.60%), Postives = 160/183 (87.43%), Query Frame = 1 
Query:   16 YERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDG----TLPHFPTKSLFPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME 552
            YE+ SL L+ GC+ +QSLE  LNG+LG++R++AGQEAMR LPW N+PRIMAECGSKGSPLNISQM+ACVGQQ+VGG RI+DG    TLPHF   SL P+AKGFVANSFY+GLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLS  YD TVRNSE T++QF YG+D LNPALME
Sbjct:  832 YEKGSLELRPGCDLLQSLEEILNGVLGKLRESAGQEAMRTLPWTNTPRIMAECGSKGSPLNISQMMACVGQQAVGGNRIQDGFVNRTLPHFEYGSLTPSAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKALEDLSFHYDSTVRNSENTVVQFHYGNDDLNPALME 1014
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14060.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU80_ECTSI2.040e-9484.32DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2RW98_9STRA2.870e-9375.42DNA-directed RNA polymerase (Fragment) n=1 Tax=Euc... [more]
A0A836CEF0_9STRA7.250e-9282.51DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2FN88_9STRA9.480e-9274.86DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]
A0A6H5KI81_9PHAE2.330e-8987.06DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7S2Q495_9STRA6.620e-8975.96DNA-directed RNA polymerase n=2 Tax=Skeletonema ma... [more]
A0A7S4NGV3_9STRA1.560e-8777.60DNA-directed RNA polymerase subunit n=1 Tax=Odonte... [more]
A0A1E7FAF7_9STRA1.950e-8777.17DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z7A2_9STRA2.590e-8776.63DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
A0A7S1FY33_9STRA8.790e-8777.60DNA-directed RNA polymerase subunit n=1 Tax=Coreth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14060contigP-wetherbeei_contig14060:79..1136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FU80
Preferred namePOLR3A
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size552
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03018,ko:K21594
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000731,GO:0001817,GO:0001819,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035770,GO:0036464,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045087,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051239,GO:0051240,GO:0051716,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
Exons3
Evalue3.35e-95
EggNOG OGsCOG0086@1|root,KOG0261@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase III, largest subunit
Ec32 orthologEc-25_003070.1
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size552
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.4210732-CDS-P-wetherbeei_contig14060:78..3381683186007.4210732-CDS-P-wetherbeei_contig14060:78..338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14060 79..338 +
1683186007.4331625-CDS-P-wetherbeei_contig14060:615..7891683186007.4331625-CDS-P-wetherbeei_contig14060:615..789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14060 616..789 +
1683186007.4442048-CDS-P-wetherbeei_contig14060:1018..11361683186007.4442048-CDS-P-wetherbeei_contig14060:1018..1136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14060 1019..1136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14060.1.1prot_P-wetherbeei_contig14060.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14060 79..1136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14060.1.1

>prot_P-wetherbeei_contig14060.1.1 ID=prot_P-wetherbeei_contig14060.1.1|Name=mRNA_P-wetherbeei_contig14060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
SFCRLYERNSLSLQAGCNAIQSLESGLNGLLGEIRQTAGQEAMRALPWGN
SPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIEDGTLPHFPTKSLFPA
AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMARRLMKAL
EDLSMQYDGTVRNSEQTIIQFVYGDDGLNPALME
back to top

mRNA from alignment at P-wetherbeei_contig14060:79..1136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14060.1.1 ID=mRNA_P-wetherbeei_contig14060.1.1|Name=mRNA_P-wetherbeei_contig14060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1058bp|location=Sequence derived from alignment at P-wetherbeei_contig14060:79..1136+ (Phaeothamnion wetherbeei SAG_119_79)
TCATTCTGCAGGCTGTATGAGCGCAACAGCCTGTCGCTGCAGGCGGGCTG
CAACGCCATCCAGTCGCTCGAGAGCGGCCTCAACGGGCTGCTGGGCGAAA
TCCGACAGACGGCGGGCCAGGAGGCCATGCGGGCGCTGCCATGGGGCAAC
AGCCCGCGCATCATGGCCGAGTGCGGCTCCAAGGGCAGCCCGCTCAACAT
CTCACAGATGATCGCCTGCGTTGGCCAGCAGTCTGTCGGTGGCAAGCGCA
TCGAGGACGGGTTCGTCAACAGGCGCGTCTCTCATGGCACCTGCTTGCTC
GTTGTTCTGTCGGGTTGTTGCTTGGACTTTCTGATTTTGTGGTCGCGTGC
GTCGACGATACGTGTGGCGTTATGCAGGGATTGATGGCGGTGATGGTAGC
GGTGCGTGTGCACGTTGATTTAGAGGCTTGTCATCCGGAGCATCCTGTGT
TCTCAATTTCGGATCGCCGGCCAAACCGCCACCTCCGCCTCGTTTTCCTT
CCTATTCTGGCTTTATGTTACCTGCGACGACCTGCAGGACACTGCCGCAC
TTCCCGACGAAGAGCCTCTTCCCCGCTGCGAAGGGCTTTGTGGCCAACTC
GTTCTACAGCGGCCTCACCGCCACCGAGTTCTTCTTCCACACGATGGGCG
GCCGCGAGGGACTCGTCGACACCGCCGTCAAGACCGCAGAGACCGGATAC
ATGGCCCGCCGGTGAGTGAAGACGACGGAGCGGGATGCGTTCTGTGTCTG
CTGTTGTGCTTTTGCATGTTCCGTTCCTTTTTTCATGGCGTTTTTATTCC
ATTTTTGTGTAGATTGACAGTGGGTTGAGTTTTCGTGCGGCTGGCGCGGG
TTCCGAGTCGTGGTCTTGCGTGATTTCAGAAAACTAAAGATAGTGGTGGC
TGTTGTCATTGGCCCTGCCTCCGCCCGATCGGCACTGCAGGCTGATGAAG
GCGCTGGAGGACCTGTCGATGCAGTACGACGGCACGGTGCGCAACTCGGA
GCAGACCATCATCCAGTTTGTCTACGGCGATGACGGGCTCAACCCCGCCC
TCATGGAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14060:79..1136+

>mRNA_P-wetherbeei_contig14060.1.1 ID=mRNA_P-wetherbeei_contig14060.1.1|Name=mRNA_P-wetherbeei_contig14060.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig14060:79..1136+ (Phaeothamnion wetherbeei SAG_119_79)
TCATTCTGCAGGCTGTATGAGCGCAACAGCCTGTCGCTGCAGGCGGGCTG
CAACGCCATCCAGTCGCTCGAGAGCGGCCTCAACGGGCTGCTGGGCGAAA
TCCGACAGACGGCGGGCCAGGAGGCCATGCGGGCGCTGCCATGGGGCAAC
AGCCCGCGCATCATGGCCGAGTGCGGCTCCAAGGGCAGCCCGCTCAACAT
CTCACAGATGATCGCCTGCGTTGGCCAGCAGTCTGTCGGTGGCAAGCGCA
TCGAGGACGGGACACTGCCGCACTTCCCGACGAAGAGCCTCTTCCCCGCT
GCGAAGGGCTTTGTGGCCAACTCGTTCTACAGCGGCCTCACCGCCACCGA
GTTCTTCTTCCACACGATGGGCGGCCGCGAGGGACTCGTCGACACCGCCG
TCAAGACCGCAGAGACCGGATACATGGCCCGCCGGCTGATGAAGGCGCTG
GAGGACCTGTCGATGCAGTACGACGGCACGGTGCGCAACTCGGAGCAGAC
CATCATCCAGTTTGTCTACGGCGATGACGGGCTCAACCCCGCCCTCATGG
AG
back to top