mRNA_P-wetherbeei_contig14056.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14056.1.1
Unique NamemRNA_P-wetherbeei_contig14056.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A2P8AJU0_9PEZI (Ubiquitin homeostasis protein lub1 n=2 Tax=Elsinoe australis TaxID=40998 RepID=A0A2P8AJU0_9PEZI)

HSP 1 Score: 54.3 bits (129), Expect = 2.390e-6
Identity = 30/84 (35.71%), Postives = 41/84 (48.81%), Query Frame = 1
Query:   34 ERTINAHKDGVNGLALACDGVSLLSGGVDATVRRWRLSDGECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVFSPDGTVLH 285
            ER +  H   V  L  A DG  L+SGG DA  R W +  GE  + L  H       +  + S  + G  D+ +RVF+P G +LH
Sbjct:  102 ERLLLGHAHNVCTLDAASDGKHLVSGGWDAQARIWDIERGETVVELKGHEASVWAVMVYDDSHIITGCADKHIRVFAPQGKLLH 185          
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A1B6IU08_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6IU08_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 8.990e-6
Identity = 27/77 (35.06%), Postives = 38/77 (49.35%), Query Frame = 1
Query:   52 HKDGVNGLALACDGVSLLSGGVDATVRRWRLSDGECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVFSPDGTVL 282
            HKD V  L+       +LS   D + + WR+ + EC L L  H       +       V GS D+++RV+SPDGT L
Sbjct:  104 HKDNVCSLSAGIQPGFVLSSSWDKSAKLWRVGEQECVLTLTGHELTIWRVLQMANGTIVTGSADKTIRVYSPDGTYL 180          
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A0S3U9K3_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. NIES-3755 TaxID=1752064 RepID=A0A0S3U9K3_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 1.590e-5
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   37 RTINAHKDGVNGLALACDGVSLLSGGVDATVRRWRLSDGECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVFSPDGTVL 282
            R  +AH   +  +  + DG  + S G+D  V+ W+ S GE    L  H    V  IA + S+   GSLDR+++++  DGT+L
Sbjct:  979 RAWSAHDAPIQKVVFSPDGQWIASSGLDGAVKLWQASTGELVAPLVGH-RGEVRAIAISKSMIATGSLDRTIKLWKLDGTLL 1059          
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A4U0TTG2_9PEZI (Uncharacterized protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0TTG2_9PEZI)

HSP 1 Score: 50.4 bits (119), Expect = 5.430e-5
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1
Query:   37 RTINAHKDGVNGLALACDGVSLLSGGVDATVRRWRLSDGECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVF 261
            R I AH D V  L       +L++ G+D TVR W L+ G C  +L  H + SV C+     L   GS+D S+R++
Sbjct:  335 REIPAHTDAVTALDFDAPFGTLVTAGLDDTVRVWDLNAGRCLGMLEGHLS-SVRCLQVEDQLVATGSMDASIRLW 408          
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A538S1J2_9BACT (WD40 repeat domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A538S1J2_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 5.470e-5
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   31 CERTINAHKDGVNGLALACDGVSLLSGGVDATVRRWRLSDG--ECTLILARHFTDSVTCIAANASLFVAGSLDRSLRV 258
            C R ++A    V GLALA +GV LL+ G D T+R W +++G  E T++ A     +V  ++ N +L  AG  D+ +R+
Sbjct:  540 CTRALSASMGPVRGLALAPNGVHLLTAGDDRTIRLWNMNNGANERTILGAEEAFYAVA-VSRNGALIAAGGADQKVRL 616          
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Match: A0A1B6L0B0_9HEMI (PFU domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L0B0_9HEMI)

HSP 1 Score: 49.7 bits (117), Expect = 9.530e-5
Identity = 26/77 (33.77%), Postives = 36/77 (46.75%), Query Frame = 1
Query:   52 HKDGVNGLALACDGVSLLSGGVDATVRRWRLSDGECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVFSPDGTVL 282
            HKD V  L        +LS   D + + W + D  C L L  H     + +       V GS D+++RV+SPDGT L
Sbjct:  104 HKDNVCSLNAGIQPGFVLSSSWDKSAKLWHVGDQRCVLTLTGHELTVWSVLQMANGTIVTGSADKTIRVYSPDGTYL 180          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14056.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2P8AJU0_9PEZI2.390e-635.71Ubiquitin homeostasis protein lub1 n=2 Tax=Elsinoe... [more]
A0A1B6IU08_9HEMI8.990e-635.06Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A0S3U9K3_9CYAN1.590e-534.15Uncharacterized protein n=1 Tax=Leptolyngbya sp. N... [more]
A0A4U0TTG2_9PEZI5.430e-537.33Uncharacterized protein n=1 Tax=Salinomyces thaila... [more]
A0A538S1J2_9BACT5.470e-537.18WD40 repeat domain-containing protein n=1 Tax=Plan... [more]
A0A1B6L0B0_9HEMI9.530e-533.77PFU domain-containing protein (Fragment) n=1 Tax=G... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14056contigP-wetherbeei_contig14056:519..818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4006.Lus10001046
PFAMsWD40
Model size300
Max annot lvl35493|Streptophyta
KEGG koko:K22382
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.35e-06
EggNOG OGsKOG0293@1|root,KOG0293@2759|Eukaryota,37KWQ@33090|Viridiplantae,3GADX@35493|Streptophyta,4JI7P@91835|fabids
DescriptionWD repeat-containing protein
Cds size300
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.1965687-CDS-P-wetherbeei_contig14056:518..8181683186007.1965687-CDS-P-wetherbeei_contig14056:518..818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14056 519..818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14056.1.1prot_P-wetherbeei_contig14056.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14056 519..818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14056.1.1

>prot_P-wetherbeei_contig14056.1.1 ID=prot_P-wetherbeei_contig14056.1.1|Name=mRNA_P-wetherbeei_contig14056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
WSLAASGGATCERTINAHKDGVNGLALACDGVSLLSGGVDATVRRWRLSD
GECTLILARHFTDSVTCIAANASLFVAGSLDRSLRVFSPDGTVLHIHRSV
back to top

mRNA from alignment at P-wetherbeei_contig14056:519..818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14056.1.1 ID=mRNA_P-wetherbeei_contig14056.1.1|Name=mRNA_P-wetherbeei_contig14056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig14056:519..818+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTCTCTCGCAGCAAGCGGTGGAGCAACCTGCGAGCGCACCATCAACGC CCACAAGGACGGCGTCAACGGACTCGCCCTCGCCTGTGACGGAGTCTCGC TGCTCAGCGGCGGGGTGGACGCCACCGTCCGCCGCTGGCGCCTTTCCGAC GGCGAGTGCACGCTGATTCTCGCCAGACACTTTACCGACAGCGTGACGTG CATTGCCGCCAACGCATCCCTCTTCGTCGCCGGCAGTCTCGACCGTTCCC TGCGCGTCTTCTCGCCCGACGGCACCGTCCTCCACATCCACCGCTCCGTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14056:519..818+

>mRNA_P-wetherbeei_contig14056.1.1 ID=mRNA_P-wetherbeei_contig14056.1.1|Name=mRNA_P-wetherbeei_contig14056.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig14056:519..818+ (Phaeothamnion wetherbeei SAG_119_79)
TGGTCTCTCGCAGCAAGCGGTGGAGCAACCTGCGAGCGCACCATCAACGC
CCACAAGGACGGCGTCAACGGACTCGCCCTCGCCTGTGACGGAGTCTCGC
TGCTCAGCGGCGGGGTGGACGCCACCGTCCGCCGCTGGCGCCTTTCCGAC
GGCGAGTGCACGCTGATTCTCGCCAGACACTTTACCGACAGCGTGACGTG
CATTGCCGCCAACGCATCCCTCTTCGTCGCCGGCAGTCTCGACCGTTCCC
TGCGCGTCTTCTCGCCCGACGGCACCGTCCTCCACATCCACCGCTCCGTC
back to top