mRNA_P-wetherbeei_contig14051.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14051.1.1
Unique NamemRNA_P-wetherbeei_contig14051.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: A0A1Y1I301_KLENI (BED-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I301_KLENI)

HSP 1 Score: 160 bits (406), Expect = 1.410e-40
Identity = 119/377 (31.56%), Postives = 176/377 (46.68%), Query Frame = 1
Query:   13 GRQPSFVWRYFER---GEAANNNRYSATCKHCGDFWDQGRVAVLQTHILVKCNGIMPTMRAEAAKELTDVKQMPAPTMPQAKAVAGNKRKAVSNLPRATKQTPIATLLAPATPFPKVVNEQYITLLLRWIIMAGISFAAVDSPLFYAFVAAISNDSFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKVGTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTLGHAFAKELVALAQCIVTFFNASSLGHGFLFAAARAAGVSTGLTTSNTTRFTSVHIMLVSVFENRVPLQIVWKEHPELF 1134
            GR  + +W ++ +   G    + R+   C +C   + + RV     HI   C      ++      L        P   +   + G + KA  + P + KQ  I+  +  A+  P+   + Y   LL   +M  I F     P F  FV A+   ++ P G   +R   L  E A V     ++++   + T T DGW+  WK SI A   +   P R ++     + S E+H+ E +A      +EK G K    L T+  + M   RRI+ E    KH++E+ C +HGF+  +GS+LGH FA  +VA AQ +VT+  AS      L A A    V+TGL +SN TRFTSVH  L SV +N  PLQ V   HPE F
Sbjct:   68 GRPQNEIWSHYTKLQGGRETADKRHWVKCTYCATEF-KSRVEDAVKHIARACKSAPDDVKLNQLAILA----AKVPASEKDYVLEGKRPKA--DAPASLKQKQISYHVDTASVLPQQ-KKIYDHKLLMLFVMRNIPFMVASDPYFLDFVRAL-RPNYAPAGDYTLRHSTLLEEAARVELAVRKKVESQGHVTLTLDGWTDAWKRSIYA--FVGSFPDRVSHLFGTEDFSDEKHTSENIASRVRIWLEKYGYKNFICLLTDNPNVMKKLRRIIVELPEAKHMLELPCGMHGFSHFIGSSLGHEFAAPVVADAQRVVTYIKASHRPLALLSAIATEQKVTTGLHSSNKTRFTSVHDCLQSVLDNERPLQAVVARHPEAF 433          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: U9SXD0_RHIID (BED-type domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SXD0_RHIID)

HSP 1 Score: 97.4 bits (241), Expect = 2.120e-18
Identity = 80/318 (25.16%), Postives = 136/318 (42.77%), Query Frame = 1
Query:   13 GRQPSFVWRYFERGEAANNNRYSATCKHCGDFWDQGRVAVLQTHILVKCNGIMPTMRAEAAKELTDVKQMPAPTMPQAKAVAGNKRKAVSNLPRATKQTPIATLLAPATPFPKVVNEQYITLLLRWIIMAGISFAAVDSPLFYAFVAAISNDSFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKVGTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTLGHAFAKELVALAQCIVTFFNAS 966
            GR+ S VW ++ + E   +  Y+A C +C   W +G+  +L++H+ + C  +  ++++E  + L                       A+ +     KQ       A      K   ++    L+R+ I  GI F+ V  P F  FV ++   ++ P     +    LN+E A V      E+K   N T   DGWS + + SI A  +I PG  ++ Y  ++ + S   H+G   A      +  +G K+ AA+ ++  SAM  ARR+++E      II++                  FAK  +   Q I+TFF  S
Sbjct:   11 GRKESHVWDHYFK-EPLGSGHYTARCHYCNQNWSRGKPEILKSHLALYCKDVPLSIKSEYMEML-----------------------AIGSTSTNRKQKLDTDSSAAEIDADK--KDKIDQALIRFFICCGIPFSTVGHPYFIDFVQSLCF-AYNPPKRSSLSTTILNKETAIVLKKIKEELKYEKNLTLAVDGWSDLLERSIYAFIIITPG--KRQYIHTLKDTSVYSHTGFFNATEIENVLTTIGPKKFAAVVSDAESAMQMARRLISEND----IIKLD-----------------FAKNTLKKCQSIITFFKTS 278          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: UPI001C186215 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C186215)

HSP 1 Score: 92.4 bits (228), Expect = 1.100e-16
Identity = 75/287 (26.13%), Postives = 132/287 (45.99%), Query Frame = 1
Query:   13 GRQPSFVWRYFERGEAANNNRYSATCKHCGDFWDQGRVAVLQTHILVKCNGIMPTMRAEAAKELTDVKQMPAPTMPQAKAVAGNKRKAVSNLPRATKQTPIATLLAPATPFPKVVNEQYITLLLRWIIMAGISFAAVDSPLFYAFVAAISNDSFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKV----GTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRC 861
            GR  S  W +F + +   +  YSA C +C   W +GR   L++H+ + C+ +   ++ E  + L     M   ++ + +    N   A  ++ ++ K                 +++     L+R+ +  GI F+ VD P F  FV A+    + P     +    LN+E   V     +E+K  +N T   DGWS     SI A  +I     +K Y  ++   S+  H+G     + +AEIEKV    G K+  A+ ++  SAM  ARR+++E+  + +I+ +RC
Sbjct:   17 GRPESHAWDHFTK-QPLGSGHYSAKCHYCAASWSKGRPETLKSHLALYCSQVPLKIKTEYMELLA----MRNTSVNRQQQTNSNDSSAELDINQSDK-----------------IDQA----LVRFFVCCGIPFSTVDHPYFLDFVKALCF-GYNPPKRTALSTTILNKEITVVLTKIKQELKYEENLTLAVDGWSDSLGRSIYAFVIITS--KKKQYIHALINESSNSHTG----PFNVAEIEKVLTSVGAKKFIAVVSDAESAMQMARRLISEK--YSNILSIRC 268          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: A0A2N0NML5_9GLOM (DUF659 domain-containing protein (Fragment) n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0NML5_9GLOM)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-8
Identity = 59/223 (26.46%), Postives = 97/223 (43.50%), Query Frame = 1
Query:  469 SFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKVGTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTLGHAFAKELVALAQCIVTFFNASSLGHGFLFA-AARAAGVSTGLTTSNTTRFTSVHIMLVSVFENRVPLQIVWKEHPELF 1134
            ++ P     +    LN+E A V      E+K  ++ T   DGWS + + SI A  +I PG  ++ Y  ++ + S + H+G   A      +  +G K+ AA+ ++  SAM  ARR+++E      II++                  FAK      Q I+TFF  S      L     ++     GL TS  TR++S      S+      L+ + +  PE+F
Sbjct:    8 AYNPPKRSSLSTTILNKETAIVLKKIKEELKYEEDLTLAVDGWSDLLERSIYAFIIITPG--KRQYIHTLKDTSVDSHTGFFNATEIENVLITIGPKKFAAVVSDAESAMQMARRLISEND----IIKLD-----------------FAKNTFKKCQTIITFFKTSYRAGAHLQEDIIQSLTKGGGLKTSVKTRWSSAWDCCDSIIRLENNLKNILETQPEIF 207          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: A0A6J1T203_FRAOC (uncharacterized protein LOC113211475 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T203_FRAOC)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-7
Identity = 51/196 (26.02%), Postives = 90/196 (45.92%), Query Frame = 1
Query:  373 TLLLRWIIMAGISFAAVDSPLFYAFVAAISNDSFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKVGTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTLGHAFAKELVALAQCIVTFFN 960
            TLL + +IM+ + F+   SP +  F   +   SF       +R   L+  +  +      ++++AD+     DG+S+   E I A  +  P P    Y +++     E+ + E ++   I  IEKVG ++V+ +CT+ AS M  A +I+ E+  +KHI    C  H   L+          K ++   Q +V  F 
Sbjct:   86 TLLSKAMIMSNLPFSTFSSPEWIKFFKEV-RPSFDLPSDWNLRHALLDYHYEEINKSVANQVEKADSVCILTDGYSNARNEGIMAFIITTPTP--LFYDMALP--GEEKETSEYVSGELIKIIEKVGPEKVSGICTDNASVMKKAWKIIEEK--YKHISCYGCSPHTLNLLTKDIAKLPSIKTVLNKCQKVVKSFK 274          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: U9TL77_RHIID (DUF659 domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TL77_RHIID)

HSP 1 Score: 57.0 bits (136), Expect = 4.710e-6
Identity = 39/133 (29.32%), Postives = 63/133 (47.37%), Query Frame = 1
Query:  589 DGWSSIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKVGTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTLGHAFAKELVALAQCIVTFFNASSLGHGFL 987
            DGW      SI A  +I P   ++ Y  ++ + S + H+G   A      +  +G ++ AA+ ++  SAM  ARR++TE+  + HI+ +RCM H   L+    L   F  E         TF     + +GFL
Sbjct:    9 DGWCDPLGRSIYAFIIITPS--KRQYIHTLKDTSMDSHTGTFNATEIEKVLTSIGPEKFAAVVSDAESAMQMARRLITEK--YTHILSIRCMAHHLNLVSNDFL--EFISEEGKTFLSYTTFQPGQFVENGFL 135          
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Match: R8BE84_PHAM7 (Putative zn 2cys6 transcription factor protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BE84_PHAM7)

HSP 1 Score: 55.8 bits (133), Expect = 8.800e-5
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1
Query:    7 LGGRQPSFVWRYFERGE--AANNNRYSATCKHCGDFWDQGRVAVLQTHILVKCNGIMPTMRAEAAKELTDV 213
            +G R  + V +YFERG+  A N+NRYS TCK CG+ + +GR+  L  H+  KC  I    R  A   L  +
Sbjct:    1 MGRRPNAVVLQYFERGQKLADNSNRYSHTCKLCGEVFPKGRIDSLTNHLTKKCVAISEADRINACLALNGI 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14051.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1Y1I301_KLENI1.410e-4031.56BED-type domain-containing protein n=1 Tax=Klebsor... [more]
U9SXD0_RHIID2.120e-1825.16BED-type domain-containing protein n=1 Tax=Rhizoph... [more]
UPI001C1862151.100e-1626.13Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
A0A2N0NML5_9GLOM1.570e-826.46DUF659 domain-containing protein (Fragment) n=1 Ta... [more]
A0A6J1T203_FRAOC1.170e-726.02uncharacterized protein LOC113211475 n=1 Tax=Frank... [more]
U9TL77_RHIID4.710e-629.32DUF659 domain-containing protein n=1 Tax=Rhizophag... [more]
R8BE84_PHAM78.800e-540.85Putative zn 2cys6 transcription factor protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14051contigP-wetherbeei_contig14051:250..1625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9TVW1
PFAMsDUF659
Model size1134
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.23e-11
EggNOG OGs2E1UA@1|root,2S94A@2759|Eukaryota,3A9M8@33154|Opisthokonta
Cds size1134
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186007.0296586-CDS-P-wetherbeei_contig14051:249..7331683186007.0296586-CDS-P-wetherbeei_contig14051:249..733Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14051 250..733 +
1683186007.0403898-CDS-P-wetherbeei_contig14051:856..10931683186007.0403898-CDS-P-wetherbeei_contig14051:856..1093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14051 857..1093 +
1683186007.0495324-CDS-P-wetherbeei_contig14051:1212..16251683186007.0495324-CDS-P-wetherbeei_contig14051:1212..1625Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14051 1213..1625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14051.1.1prot_P-wetherbeei_contig14051.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14051 250..1625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14051.1.1

>prot_P-wetherbeei_contig14051.1.1 ID=prot_P-wetherbeei_contig14051.1.1|Name=mRNA_P-wetherbeei_contig14051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=378bp
PNLGGRQPSFVWRYFERGEAANNNRYSATCKHCGDFWDQGRVAVLQTHIL
VKCNGIMPTMRAEAAKELTDVKQMPAPTMPQAKAVAGNKRKAVSNLPRAT
KQTPIATLLAPATPFPKVVNEQYITLLLRWIIMAGISFAAVDSPLFYAFV
AAISNDSFKPVGSGQMRGEYLNREFAAVYNVQMREIKEADNCTFTFDGWS
SIWKESIQAGNLIAPGPPRKTYTVSIHEMSTERHSGEAMAEYFIAEIEKV
GTKRVAALCTNGASAMNTARRIVTERQGFKHIIEMRCMIHGFALILGSTL
GHAFAKELVALAQCIVTFFNASSLGHGFLFAAARAAGVSTGLTTSNTTRF
TSVHIMLVSVFENRVPLQIVWKEHPELF
back to top

mRNA from alignment at P-wetherbeei_contig14051:250..1625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14051.1.1 ID=mRNA_P-wetherbeei_contig14051.1.1|Name=mRNA_P-wetherbeei_contig14051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-wetherbeei_contig14051:250..1625+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAACCTTGGCGGCCGGCAGCCGTCTTTCGTGTGGAGGTACTTTGAAAG GGGGGAGGCGGCAAACAACAACCGATACTCAGCCACGTGCAAGCACTGCG GCGACTTCTGGGACCAGGGTCGTGTGGCGGTACTGCAGACTCATATCTTG GTTAAATGCAACGGCATCATGCCGACCATGAGGGCTGAGGCAGCGAAGGA GCTGACTGACGTCAAGCAGATGCCGGCGCCGACGATGCCGCAAGCGAAGG CAGTGGCCGGTAACAAGCGGAAGGCCGTCAGCAACCTCCCGCGTGCCACC AAGCAAACGCCGATCGCGACCCTCCTCGCGCCAGCAACGCCGTTTCCTAA GGTTGTGAATGAGCAGTACATCACGCTGCTGCTGCGCTGGATCATCATGG CGGGCATCTCTTTTGCCGCCGTCGACAGCCCGCTCTTCTACGCCTTTGTT GCTGCAATCTCCAACGACAGCTTCAAGCCGGTCGGTAAGAAGGAAATTGA AAGCGCCGCCGTTACCCTTCCCTCACTTTCCTTCCTGTTTCCGCCCTTCA TCCTTCTCCTGCCTTCTTACTTCTTTTTCTATGTTTCTGCTTCTTCCTCT GCGGTAGGCTCGGGGCAGATGAGGGGGGAATACCTCAACAGAGAGTTCGC TGCCGTGTACAACGTGCAGATGAGAGAGATCAAAGAGGCCGACAACTGTA CCTTCACATTCGATGGTTGGAGCAGCATATGGAAAGAATCCATCCAAGCG GGCAACCTGATTGCGCCTGGTCCGCCCCGCAAGACGTACACGGTCAGCAT CCATGAAATGTCGACCGAGCGTCATAGCGGCGAAGCCATGGCTGGTAAGA ATCTGTTTCTGAAATTGCCTTTCCCCTTCTTTTTTATGCTTTCCCCTTAC TACAACAATGCCTTGCCTCCACCGTTCAACCCCCCCCGGCTGGCCTGTTG CTGCCCAAAACAGAGTATTTCATCGCCGAGATCGAGAAGGTGGGCACCAA ACGAGTTGCCGCCCTCTGCACCAACGGCGCTTCCGCGATGAACACAGCAC GGCGCATCGTGACCGAGAGGCAGGGCTTCAAGCACATCATCGAGATGCGC TGCATGATACATGGCTTCGCGCTCATCCTCGGCTCCACCCTCGGCCACGC GTTCGCCAAGGAGCTTGTCGCCCTCGCTCAATGCATTGTTACCTTCTTCA ATGCCTCAAGTCTCGGCCATGGCTTCCTTTTTGCGGCGGCAAGGGCTGCA GGAGTGTCGACGGGCCTCACGACCTCGAATACGACACGCTTCACTTCTGT CCACATCATGCTGGTTTCGGTATTCGAAAACCGCGTCCCGCTGCAAATCG TGTGGAAGGAGCATCCCGAGCTGTTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14051:250..1625+

>mRNA_P-wetherbeei_contig14051.1.1 ID=mRNA_P-wetherbeei_contig14051.1.1|Name=mRNA_P-wetherbeei_contig14051.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1134bp|location=Sequence derived from alignment at P-wetherbeei_contig14051:250..1625+ (Phaeothamnion wetherbeei SAG_119_79)
CCCAACCTTGGCGGCCGGCAGCCGTCTTTCGTGTGGAGGTACTTTGAAAG
GGGGGAGGCGGCAAACAACAACCGATACTCAGCCACGTGCAAGCACTGCG
GCGACTTCTGGGACCAGGGTCGTGTGGCGGTACTGCAGACTCATATCTTG
GTTAAATGCAACGGCATCATGCCGACCATGAGGGCTGAGGCAGCGAAGGA
GCTGACTGACGTCAAGCAGATGCCGGCGCCGACGATGCCGCAAGCGAAGG
CAGTGGCCGGTAACAAGCGGAAGGCCGTCAGCAACCTCCCGCGTGCCACC
AAGCAAACGCCGATCGCGACCCTCCTCGCGCCAGCAACGCCGTTTCCTAA
GGTTGTGAATGAGCAGTACATCACGCTGCTGCTGCGCTGGATCATCATGG
CGGGCATCTCTTTTGCCGCCGTCGACAGCCCGCTCTTCTACGCCTTTGTT
GCTGCAATCTCCAACGACAGCTTCAAGCCGGTCGGCTCGGGGCAGATGAG
GGGGGAATACCTCAACAGAGAGTTCGCTGCCGTGTACAACGTGCAGATGA
GAGAGATCAAAGAGGCCGACAACTGTACCTTCACATTCGATGGTTGGAGC
AGCATATGGAAAGAATCCATCCAAGCGGGCAACCTGATTGCGCCTGGTCC
GCCCCGCAAGACGTACACGGTCAGCATCCATGAAATGTCGACCGAGCGTC
ATAGCGGCGAAGCCATGGCTGAGTATTTCATCGCCGAGATCGAGAAGGTG
GGCACCAAACGAGTTGCCGCCCTCTGCACCAACGGCGCTTCCGCGATGAA
CACAGCACGGCGCATCGTGACCGAGAGGCAGGGCTTCAAGCACATCATCG
AGATGCGCTGCATGATACATGGCTTCGCGCTCATCCTCGGCTCCACCCTC
GGCCACGCGTTCGCCAAGGAGCTTGTCGCCCTCGCTCAATGCATTGTTAC
CTTCTTCAATGCCTCAAGTCTCGGCCATGGCTTCCTTTTTGCGGCGGCAA
GGGCTGCAGGAGTGTCGACGGGCCTCACGACCTCGAATACGACACGCTTC
ACTTCTGTCCACATCATGCTGGTTTCGGTATTCGAAAACCGCGTCCCGCT
GCAAATCGTGTGGAAGGAGCATCCCGAGCTGTTC
back to top