mRNA_P-wetherbeei_contig14050.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14050.3.1
Unique NamemRNA_P-wetherbeei_contig14050.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 181 bits (458), Expect = 1.000e-54
Identity = 90/131 (68.70%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            LKLA +  SLTHYTKGTPSP   APTACR  +SG++SLPLSGCFSPFPHGT SLSV EEYLGLE GPPMFRQDFTCPALL++       G  P        F     QHWPGP SLATT GVSVDVLSSGY
Sbjct:   61 LKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKADTRFTPTGLSPAMARLSRRFRLCKYQHWPGPRSLATTNGVSVDVLSSGY 191
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 177 bits (450), Expect = 9.870e-54
Identity = 91/131 (69.47%), Postives = 96/131 (73.28%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            LKLA + KSLTHYTKGTPSP L APT CR P+SGSISLP SGCFSPFPHGTCSLSV+ EYLGLE G PMFRQDFTCPALL+        G  P        FGF+   HWPGP SLATT GVSVDVLS  Y
Sbjct:   46 LKLACYTKSLTHYTKGTPSP-LRAPTVCRHPVSGSISLPSSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNQCSTPTGLSPTIAKLSNLFGFIPDCHWPGPRSLATTCGVSVDVLSCRY 175
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 183 bits (464), Expect = 8.340e-52
Identity = 91/131 (69.47%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            LKLA + KSLTHYTKGTPSP  EAPTACR P+SG++SLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL         G  P        F      HWPGP SLATT+GVSVDVLSSGY
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDCFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGY 149
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A6A5L866_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L866_LUPAL)

HSP 1 Score: 182 bits (462), Expect = 9.730e-51
Identity = 91/131 (69.47%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            LKLA + KSLTHYTKGTPSP  EAPTACR P+SG++SLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL         G  P        F      HWPGP SLATT+GVSVDVLSSGY
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGY 149
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A6A5L6S4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6S4_LUPAL)

HSP 1 Score: 182 bits (462), Expect = 9.820e-51
Identity = 91/131 (69.47%), Postives = 97/131 (74.05%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            LKLA + KSLTHYTKGTPSP  EAPTACR P+SG++SLPLSGCFSPFPHGT +LSV EEYLGLEGGPPMFRQ FTCPALL         G  P        F      HWPGP SLATT+GVSVDVLSSGY
Sbjct:   19 LKLAAYSKSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALLVDRFRFIRTGLSPAMARLSRRFRLCRSNHWPGPRSLATTSGVSVDVLSSGY 149
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A6A5L965_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L965_LUPAL)

HSP 1 Score: 176 bits (445), Expect = 8.970e-49
Identity = 89/128 (69.53%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLS 384
            LKLA + KSLTHYTKGTPS  L  PTACR P+SGSISLPLSGCFSPFPHGTCSLSV+ EYLGLE G PMFRQDFTCPALL+        G  P+       F F+   HWPGP SLATT GVSVDVLS
Sbjct:  602 LKLASYTKSLTHYTKGTPS-GLRPPTACRHPVSGSISLPLSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLKDNECSTSTGLSPILARLSNLFDFIPHCHWPGPRSLATTCGVSVDVLS 728
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 159 bits (403), Expect = 3.970e-47
Identity = 81/136 (59.56%), Postives = 95/136 (69.85%), Query Frame = 1 
Query:    1 LKLARHMKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*----RLRGYHPLWPIFPGSFG-FMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            + LA   KSLTHYTKGTPSP   APTACR P+S ++SLP SGCFSPFPHGT SLSV +EYL  EGGPP+FRQDFTCPALL    +     R++GYH LWP FP  F    ++++   P S ATT G+SVD  S  Y
Sbjct:    1 VNLATECKSLTHYTKGTPSPLKGAPTACRRPVSETVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALLVVPLVPQRGFRIQGYHLLWPGFPSRFANHTAKKYKAHPISFATTLGISVDFCSCSY 136
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: D1CZ21_9HYPH (Uncharacterized protein (Fragment) n=7 Tax=Brucella TaxID=234 RepID=D1CZ21_9HYPH)

HSP 1 Score: 145 bits (366), Expect = 2.140e-42
Identity = 70/108 (64.81%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:   70 APTACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*RLRGYHPLWPIFPGSFGFMSRQHWPGPGSLATTTGVSVDVLSSGY 393
            APT CR P+SG++SLP SG FSPFPHGT SLSV+ EYLGL+ G PMFRQDFTCPALL+        G  P    F  SF F+ + HWPGP SLATT+GVS DVLSSGY
Sbjct:   18 APTVCRHPVSGTVSLPSSGYFSPFPHGTGSLSVMHEYLGLDRGRPMFRQDFTCPALLKDFCYSTCTGLSPTSVEFSNSFHFIHKSHWPGPRSLATTSGVSFDVLSSGY 125
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A6G5ADV0_RHIMP (Uncharacterized protein (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ADV0_RHIMP)

HSP 1 Score: 122 bits (305), Expect = 3.170e-33
Identity = 60/68 (88.24%), Postives = 60/68 (88.24%), Query Frame = 3 
Query:   87 ASDFRFYFTPLVGVLFTFPSRYLFTIGH*GVLRLGGWSPHVQTGFHVSRPTRVCRYLTPTGLSPAMAD 290
            ASDFR  FTPLVGVLFTFPSRYLFTIG  GVLRLGGWSPHVQTGFHVSRPTRV   LT TGLSPAMAD
Sbjct:    1 ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRVSCCLTSTGLSPAMAD 68
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BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Match: A0A0V0GKN2_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GKN2_SOLCH)

HSP 1 Score: 112 bits (279), Expect = 3.430e-29
Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    7 LARHMKSLTHYTKGTPSPRLEAPT--ACRLPISGSISLPLSGCFSPFPHGTCSLSVIEEYLGLEGGPPMFRQDFTCPALLESVAI*----RLRGYHPLWPIFP 297
            LA   KSLTHYTKGT SP   +    AC   I  +   PL G FSPFPHGT SLSV  EYL LE GPP+FRQDFTCPALL + ++     R+RGYHPLWP FP
Sbjct:    3 LATEXKSLTHYTKGTQSPLAGSYFLYACGFRIYFT---PLPGFFSPFPHGTGSLSVDHEYLALEDGPPIFRQDFTCPALLVARSVPPPRFRIRGYHPLWPDFP 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14050.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q3BKI1_9PROT1.000e-5468.70Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
UPI001A08AA199.870e-5469.47Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]
A0A6A5L4G5_LUPAL8.340e-5269.47Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L866_LUPAL9.730e-5169.47Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6S4_LUPAL9.820e-5169.47Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L965_LUPAL8.970e-4969.53Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A2S2PQL9_SCHGA3.970e-4759.56Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
D1CZ21_9HYPH2.140e-4264.81Uncharacterized protein (Fragment) n=7 Tax=Brucell... [more]
A0A6G5ADV0_RHIMP3.170e-3388.24Uncharacterized protein (Fragment) n=1 Tax=Rhipice... [more]
A0A0V0GKN2_SOLCH3.430e-2960.19Putative ovule protein (Fragment) n=1 Tax=Solanum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14050contigP-wetherbeei_contig14050:1226..1618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1430440.MGMSRv2_1983
Model size393
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-37
EggNOG OGs2DNPH@1|root,32YF1@2|Bacteria,1NARM@1224|Proteobacteria,2UJNP@28211|Alphaproteobacteria
Cds size240
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.9733965-UTR-P-wetherbeei_contig14050:1225..12431683186006.9733965-UTR-P-wetherbeei_contig14050:1225..1243Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14050 1226..1243 +
1683186006.9915178-UTR-P-wetherbeei_contig14050:1483..16181683186006.9915178-UTR-P-wetherbeei_contig14050:1483..1618Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14050 1484..1618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.9831572-CDS-P-wetherbeei_contig14050:1243..14831683186006.9831572-CDS-P-wetherbeei_contig14050:1243..1483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14050 1244..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14050.3.1prot_P-wetherbeei_contig14050.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14050 1244..1483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14050.3.1

>prot_P-wetherbeei_contig14050.3.1 ID=prot_P-wetherbeei_contig14050.3.1|Name=mRNA_P-wetherbeei_contig14050.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MKSLTHYTKGTPSPRLEAPTACRLPISGSISLPLSGCFSPFPHGTCSLSV
IEEYLGLEGGPPMFRQDFTCPALLESVAI*
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mRNA from alignment at P-wetherbeei_contig14050:1226..1618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14050.3.1 ID=mRNA_P-wetherbeei_contig14050.3.1|Name=mRNA_P-wetherbeei_contig14050.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig14050:1226..1618+ (Phaeothamnion wetherbeei SAG_119_79)
CTTAAGCTTGCACGGCACATGAAGTCGCTGACCCATTATACAAAAGGTAC
GCCGTCACCTCGCTTGGAGGCTCCGACTGCTTGTAGGCTTCCGATTTCAG
GTTCTATTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCACGGT
ACTTGTTCACTATCGGTCATTGAGGAGTACTTAGGCTTGGAGGGTGGTCC
CCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCGAGTCTGTCG
CTATTTGACGCCTACGGGGCTATCACCCGCTATGGCCGATCTTTCCAGGA
TCGTTCGGCTTTATGTCACGACAGCACTGGCCTGGTCCCGGTTCGCTCGC
CACTACTACGGGAGTCTCGGTTGATGTCCTTTCCTCCGGGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14050:1226..1618+

>mRNA_P-wetherbeei_contig14050.3.1 ID=mRNA_P-wetherbeei_contig14050.3.1|Name=mRNA_P-wetherbeei_contig14050.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig14050:1226..1618+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCTCGCTTGGA
GGCTCCGACTGCTTGTAGGCTTCCGATTTCAGGTTCTATTTCACTCCCCT
TGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTC
ATTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGA
TTTCACGTGTCCCGCCCTACTCGAGTCTGTCGCTATTTGA
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