mRNA_P-wetherbeei_contig14050.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14050.2.1
Unique NamemRNA_P-wetherbeei_contig14050.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: E0XS38_9PROT (Uncharacterized protein (Fragment) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 TaxID=710804 RepID=E0XS38_9PROT)

HSP 1 Score: 132 bits (331), Expect = 1.350e-36
Identity = 76/111 (68.47%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   55 QVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQLTFAGLRNAPLPLAVNCKPIPSAS--GLSPVTFSAQDRLT 381
            Q++  VT++  RNINL+PIDY FRPRLRGRLTL  L L RNPWA+GESVSHTL RYSCQHSHFRYLQ  SQ TF GLRNAPLP     K   SAS  GLSP T SAQ  L+
Sbjct:    2 QLSIFVTTTRLRNINLIPIDYGFRPRLRGRLTLGGLTLPRNPWAYGESVSHTLCRYSCQHSHFRYLQHPSQDTFTGLRNAPLPCV---KDTSSASVYGLSPDTSSAQAGLS 109          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 131 bits (329), Expect = 3.770e-36
Identity = 69/89 (77.53%), Postives = 73/89 (82.02%), Query Frame = 1
Query:    1 LELFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQ 267
            LELFPG  SL  QS+K  Q+T  VTSS   NIN+VPIDYAFRPRLRGRLTLR LALRRNPW FGESVSHTL RYSCQHSHFRYLQ  S+
Sbjct:   62 LELFPGPSSLHPQSDKQVQLTKVVTSSRPTNINVVPIDYAFRPRLRGRLTLRGLALRRNPWTFGESVSHTLCRYSCQHSHFRYLQRPSR 150          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: H6SID8_PARPM (Uncharacterized protein (Fragment) n=2 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SID8_PARPM)

HSP 1 Score: 130 bits (327), Expect = 7.580e-36
Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    7 LFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQLTFAGLRNAPLPL 306
            LFPG P  P QS+K+RQ    VT    R INL+ I Y FRPRLR RLTLR L LRRNPWAFG SVSHT +RYSCQHSH  YLQ +S+ TF G+RNAPLPL
Sbjct:   29 LFPGLPWRPDQSDKIRQRPEGVTLHELRTINLIAIAYGFRPRLRDRLTLRGLTLRRNPWAFGGSVSHTSFRYSCQHSHXXYLQQSSRTTFTGVRNAPLPL 128          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: A0A0H3KX17_BURM1 (Uncharacterized protein n=1 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) TaxID=395019 RepID=A0A0H3KX17_BURM1)

HSP 1 Score: 127 bits (319), Expect = 5.330e-35
Identity = 75/124 (60.48%), Postives = 78/124 (62.90%), Query Frame = 2
Query:   95 LTWFPSTTPFGLALGAD*PCAD*LYAGTLGLSARVSLTLFIATHVSILTSDTSSQPRS*PSQAYGTLRYRLQ*TANPYLRRLA*APLHFPRRIA*PVSCYAFFK*WLLLSQHPGCQSNPTSFPT 466
            +T FPS T F LALGAD P AD    G LGL+AR   T FIATHVSI TSDTSS     PSQAYGTL Y     A+        APLH PRR    VS YAFFK WLLLSQ P C S PTSFPT
Sbjct:    1 MTCFPSATHFCLALGADSPYADERCVGNLGLTARGPFTPFIATHVSIRTSDTSSTLYKAPSQAYGTLSYHACKHASA-ASVYGLAPLHLPRRTTRSVSYYAFFKGWLLLSQPPDCFSLPTSFPT 123          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: H6SIE3_PARPM (Uncharacterized protein n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIE3_PARPM)

HSP 1 Score: 121 bits (303), Expect = 8.350e-33
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   28 LPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQLTFAGLRNAPLPL-AVNCKPIP 330
            +P QS+K RQ    VT    R INL+ I Y FRPRLR RLTLR L LRRNPWAFG SVSHT +RYSCQHSH  YLQ +S+ TF G+RNAPLPL  +  +P P
Sbjct:    1 MPGQSDKTRQRPEGVTLHELRTINLIAIAYGFRPRLRDRLTLRGLTLRRNPWAFGGSVSHTSFRYSCQHSHXXYLQQSSRTTFTGVRNAPLPLHLIRVEPTP 102          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: A0A6A5L5E7_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5E7_LUPAL)

HSP 1 Score: 130 bits (326), Expect = 2.300e-32
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    7 LFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQ 267
            LFPGTPS P QS+K+ + T SVT  W  NI  VPIDYAFRPRLRGRLTLRRL LRRNPW FGESV HTL RYSCQHSHF YL   SQ
Sbjct:  346 LFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHSHFPYLHGPSQ 432          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: A0A6A5L269_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L269_LUPAL)

HSP 1 Score: 130 bits (326), Expect = 3.210e-32
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    7 LFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQ 267
            LFPGTPS P QS+K+ + T SVT  W  NI  VPIDYAFRPRLRGRLTLRRL LRRNPW FGESV HTL RYSCQHSHF YL   SQ
Sbjct:  397 LFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHSHFPYLHGPSQ 483          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: A0A6A5L1U4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L1U4_LUPAL)

HSP 1 Score: 130 bits (326), Expect = 4.570e-32
Identity = 65/87 (74.71%), Postives = 68/87 (78.16%), Query Frame = 1
Query:    7 LFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQ 267
            LFPGTPS P QS+K+ + T SVT  W  NI  VPIDYAFRPRLRGRLTLRRL LRRNPW FGESV HTL RYSCQHSHF YL   SQ
Sbjct:  355 LFPGTPSPPEQSDKLERYTASVTFRWPGNIRPVPIDYAFRPRLRGRLTLRRLTLRRNPWTFGESVFHTLCRYSCQHSHFPYLHGPSQ 441          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: A0A2P2K9Q4_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9Q4_RHIMU)

HSP 1 Score: 117 bits (293), Expect = 1.440e-31
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    7 LFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSHTLYRYSCQHSHF 243
            LFPGT S P QS KV Q TG VT  W +NI+ +PIDYAFRPRLRGRLTLRRL LRRNPW FG++V H++ RYSCQHSHF
Sbjct:    4 LFPGTHSRPDQSIKVGQHTGFVTIHWLQNIHCIPIDYAFRPRLRGRLTLRRLTLRRNPWTFGDTVFHSVCRYSCQHSHF 82          
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Match: E7C670_9ACTN (Uncharacterized protein n=1 Tax=uncultured actinobacterium HF0500_35G12 TaxID=723604 RepID=E7C670_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 6.490e-28
Identity = 76/155 (49.03%), Postives = 95/155 (61.29%), Query Frame = 1
Query:   13 PGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLTLRRLALRRNPWAFGESVSH-TLYRYSCQHSHFRYLQPASQLTFAGLRNAPLPLAVNCKPIPSASGLSPVTFSAQDRLTSELLRFL*MMAASKPTSWLSKQSHIVSHLAR 474
            P  P++P  +  VR+ + ++   W RNIN + IDYA RPRL  RLTL  L+L RNPW  G  VSH +L  Y+   +  R    ++  +    R+A  P     +   SAS LSPVTFSA+D LTSELLR L M+AASKPTSWLS QSH V HL R
Sbjct:   43 PEGPAIPL-ATAVRRWSRNL---WYRNINRLCIDYASRPRLSSRLTLGGLSLPRNPWTSGGGVSHPSLATYTYILTRARSTTVSTGASLRTRRSATTP--AKQESATSASDLSPVTFSARDHLTSELLRTLSMVAASKPTSWLSGQSHFVFHLVR 191          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14050.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E0XS38_9PROT1.350e-3668.47Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
Q3BKI0_9PROT3.770e-3677.53Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
H6SID8_PARPM7.580e-3667.00Uncharacterized protein (Fragment) n=2 Tax=Pararho... [more]
A0A0H3KX17_BURM15.330e-3560.48Uncharacterized protein n=1 Tax=Burkholderia multi... [more]
H6SIE3_PARPM8.350e-3362.75Uncharacterized protein n=1 Tax=Pararhodospirillum... [more]
A0A6A5L5E7_LUPAL2.300e-3274.71Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L269_LUPAL3.210e-3274.71Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L1U4_LUPAL4.570e-3274.71Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A2P2K9Q4_RHIMU1.440e-3172.15Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
E7C670_9ACTN6.490e-2849.03Uncharacterized protein n=1 Tax=uncultured actinob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14050contigP-wetherbeei_contig14050:349..822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1150469.RSPPHO_03274
Model size474
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.36e-37
EggNOG OGs2DTV2@1|root,33MS7@2|Bacteria,1NKAB@1224|Proteobacteria
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.9253285-CDS-P-wetherbeei_contig14050:348..7531683186006.9253285-CDS-P-wetherbeei_contig14050:348..753Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14050 349..753 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.940842-UTR-P-wetherbeei_contig14050:753..8221683186006.940842-UTR-P-wetherbeei_contig14050:753..822Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14050 754..822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14050.2.1prot_P-wetherbeei_contig14050.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14050 349..753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14050.2.1

>prot_P-wetherbeei_contig14050.2.1 ID=prot_P-wetherbeei_contig14050.2.1|Name=mRNA_P-wetherbeei_contig14050.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
LELFPGTPSLPFQSNKVRQVTGSVTSSWSRNINLVPIDYAFRPRLRGRLT
LRRLALRRNPWAFGESVSHTLYRYSCQHSHFRYLQPASQLTFAGLRNAPL
PLAVNCKPIPSASGLSPVTFSAQDRLTSELLRFL*
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mRNA from alignment at P-wetherbeei_contig14050:349..822+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14050.2.1 ID=mRNA_P-wetherbeei_contig14050.2.1|Name=mRNA_P-wetherbeei_contig14050.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig14050:349..822+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGTTATTTCCTGGGACCCCTTCCCTGCCCTTCCAATCCAATAAGGT CAGACAAGTTACGGGATCCGTCACTTCCAGCTGGTCCAGGAATATTAACC TGGTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGACTAACC CTGCGCAGATTAGCTTTACGCAGGAACCCTTGGGCTTTCGGCGAGAGTGT CTCTCACACTCTTTATCGCTACTCATGTCAGCATTCTCACTTCCGATACC TCCAGCCAGCCTCGCAGCTGACCTTCGCAGGCTTACGGAACGCTCCGCTA CCGCTTGCAGTAAACTGCAAACCCATACCTTCGGCGTCTGGCTTGAGCCC CGTTACATTTTCCGCGCAGGATCGCTTGACCAGTGAGCTGTTACGCTTTC TTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTCAAAGCAATCC CACATCGTTTCCCACTTAGCCAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14050:349..822+

>mRNA_P-wetherbeei_contig14050.2.1 ID=mRNA_P-wetherbeei_contig14050.2.1|Name=mRNA_P-wetherbeei_contig14050.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig14050:349..822+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGTTATTTCCTGGGACCCCTTCCCTGCCCTTCCAATCCAATAAGGT
CAGACAAGTTACGGGATCCGTCACTTCCAGCTGGTCCAGGAATATTAACC
TGGTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGACTAACC
CTGCGCAGATTAGCTTTACGCAGGAACCCTTGGGCTTTCGGCGAGAGTGT
CTCTCACACTCTTTATCGCTACTCATGTCAGCATTCTCACTTCCGATACC
TCCAGCCAGCCTCGCAGCTGACCTTCGCAGGCTTACGGAACGCTCCGCTA
CCGCTTGCAGTAAACTGCAAACCCATACCTTCGGCGTCTGGCTTGAGCCC
CGTTACATTTTCCGCGCAGGATCGCTTGACCAGTGAGCTGTTACGCTTTC
TTTAA
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