mRNA_P-wetherbeei_contig1405.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1405.1.1
Unique NamemRNA_P-wetherbeei_contig1405.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1405.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1405contigP-wetherbeei_contig1405:3..912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009038822.1
PFAMsLectin_legB,TIG,fn3
Model size337
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue7.56e-09
EggNOG OGs28KFE@1|root,2QSWE@2759|Eukaryota
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.7249544-CDS-P-wetherbeei_contig1405:2..251683186006.7249544-CDS-P-wetherbeei_contig1405:2..25Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1405 3..25 -
1683186006.733231-CDS-P-wetherbeei_contig1405:369..5671683186006.733231-CDS-P-wetherbeei_contig1405:369..567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1405 370..567 -
1683186006.740593-CDS-P-wetherbeei_contig1405:797..9061683186006.740593-CDS-P-wetherbeei_contig1405:797..906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1405 798..906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.7538142-UTR-P-wetherbeei_contig1405:906..9121683186006.7538142-UTR-P-wetherbeei_contig1405:906..912Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1405 907..912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1405.1.1prot_P-wetherbeei_contig1405.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1405 3..906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1405.1.1

>prot_P-wetherbeei_contig1405.1.1 ID=prot_P-wetherbeei_contig1405.1.1|Name=mRNA_P-wetherbeei_contig1405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MREIRAPLRPCRSILSRYVVFIFVAFFSRAGSREIEAAWEFLESTEGWGD
AAAEEVGAELHHEGGSLVGTVTGPEPRLDSPPVWLRAIDRHYVALRMSYS
GRATALRLEL
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mRNA from alignment at P-wetherbeei_contig1405:3..912-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1405.1.1 ID=mRNA_P-wetherbeei_contig1405.1.1|Name=mRNA_P-wetherbeei_contig1405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=910bp|location=Sequence derived from alignment at P-wetherbeei_contig1405:3..912- (Phaeothamnion wetherbeei SAG_119_79)
CGTCCGATGAGGGAAATACGAGCACCGTTGCGGCCTTGTCGCAGTATTCT
CAGTAGATATGTCGTTTTCATCTTTGTAGCCTTCTTCTCACGGGCAGGTT
CGAGGGAGATTGAAGGTGAGGGGATCTCGACGACGTCAATGCGTTGCTAC
TGTAGCGCATTCGATTTTATCGTCCGCTTGATGCATGCTGCTTCGCTTCT
TCTCTGTTTTGCCTTACGAAATGACTGGAGAGTAGCTGCTTGTTCAAATA
ACCTCTTTTTGTTTCCTGTGCCCCAACTTATCCACAACAAAGCAACTTTG
CTGATGTAACCTCTTCTCTTCTACTACACGGATTTTGCCTCGCAGCCGCC
TGGGAATTCTTGGAAAGCACGGAAGGCTGGGGCGATGCCGCAGCGGAGGA
AGTTGGCGCCGAGCTCCATCACGAAGGCGGGAGTCTCGTCGGTACCGTTA
CGGGGCCGGAGCCGCGGCTGGACTCACCGCCGGTATGGCTTCGTGCCATA
GACCGGCACTACGTGGCACTGCGAATGTCATACTCAGGCAGAGGTGAGCG
CACGTGCTGCAACCGTCGTAAGAGATTCGGGAAGCTTCCCATCTTCTTGA
CATACCACGATTTGCCGTATCAAGTCGAGACGGAACCATTTGAGAGATGG
CCCGTTTTCTTTTTTGTATCGCAGTAGTTTTGAGTCTCCAAATTAGACGG
TGTGCAAACGCGGGTAGGATGTCTCTACAAACAGAAAGAAGCTTTGTCGA
TCGAAACAAAAATTGCACATTTTCGGTGCATGTTTCCGATGTTAACTGAG
GAGAAACGGCAATCACCTTCGTGTCCCATCGATCTTCTCAAAACTGCTTC
AACACGGCGGTCCGCACACGCGCCTCTTTTCGCGCAGCAACGGCGCTGCG
GCTGGAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1405:3..912-

>mRNA_P-wetherbeei_contig1405.1.1 ID=mRNA_P-wetherbeei_contig1405.1.1|Name=mRNA_P-wetherbeei_contig1405.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig1405:3..912- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGAAATACGAGCACCGTTGCGGCCTTGTCGCAGTATTCTCAGTAG
ATATGTCGTTTTCATCTTTGTAGCCTTCTTCTCACGGGCAGGTTCGAGGG
AGATTGAAGCCGCCTGGGAATTCTTGGAAAGCACGGAAGGCTGGGGCGAT
GCCGCAGCGGAGGAAGTTGGCGCCGAGCTCCATCACGAAGGCGGGAGTCT
CGTCGGTACCGTTACGGGGCCGGAGCCGCGGCTGGACTCACCGCCGGTAT
GGCTTCGTGCCATAGACCGGCACTACGTGGCACTGCGAATGTCATACTCA
GGCAGAGCAACGGCGCTGCGGCTGGAGCTG
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