mRNA_P-wetherbeei_contig14041.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14041.2.1
Unique NamemRNA_P-wetherbeei_contig14041.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A537BVY1_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BVY1_9PROT)

HSP 1 Score: 228 bits (580), Expect = 1.720e-73
Identity = 111/170 (65.29%), Postives = 130/170 (76.47%), Query Frame = 1
Query:   22 LSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPAD 531
            +S S++   QR  YE IA GPRGGVRGPFNALLRSP L DR Q++GE IRFHSSLPARLNE AIL+ ARHW++Q+EWYAH  LAL AGL P  A ++A   RP A+K DE+AVYDFC EL E K V+DATY   +   GERGV+DL+G  GYYT+VSMVLNVDRHP P +
Sbjct:    1 MSVSELNDAQRKVYEEIAGGPRGGVRGPFNALLRSPELTDRVQRMGEVIRFHSSLPARLNEFAILITARHWSSQYEWYAHHPLALKAGLAPGVASDLAQRRRPAAMKDDEAAVYDFCTELHEKKFVSDATYKAVLERLGERGVIDLIGVSGYYTLVSMVLNVDRHPAPEN 170          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A2V8F8E9_9BACT (Carboxymuconolactone decarboxylase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8F8E9_9BACT)

HSP 1 Score: 221 bits (564), Expect = 2.030e-70
Identity = 109/177 (61.58%), Postives = 132/177 (74.58%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADAVP 540
            RF  L+  +MTPEQR+  E + AG RGG  GPFNALLRSP + D  Q++G  +RFHSSLPAR+NELAI++ AR+WTAQ+EWYAHR+LA+ AG+ P  AD IAAG RP +L  DE  VY+F  ELL  KQV+DA +   V  FGERGVVDL+G  GYY +VSM+LNVDRHPLPA   P
Sbjct:   36 RFKPLTYDEMTPEQRTMLEHLFAGERGGAGGPFNALLRSPQMGDLAQQMGAQLRFHSSLPARVNELAIIMTARYWTAQYEWYAHRRLAVQAGVSPMTADAIAAGTRPSSLTGDEEVVYNFATELLNTKQVSDAAFQAVVNRFGERGVVDLIGVMGYYHLVSMLLNVDRHPLPAGVKP 212          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A8J2ZDK3_9PROT (Carboxymuconolactone decarboxylase n=1 Tax=Caldovatus sediminis TaxID=2041189 RepID=A0A8J2ZDK3_9PROT)

HSP 1 Score: 216 bits (549), Expect = 2.020e-68
Identity = 105/177 (59.32%), Postives = 128/177 (72.32%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADAVP 540
            RF  + P  M+PEQRS  EAIA GPRGG+RGPFN LLRSP LADRFQ+VGE++RF+SS+P  LNE AIL+ AR W+AQ+EWYAH +LA+ AGL P  A  +A G RP  +  DE+ VYDFC EL   + V+DAT+  A   FGE+GVVDL+G  GYY  V+MVLNV + PLP    P
Sbjct:   14 RFPPIPPERMSPEQRSVAEAIAGGPRGGLRGPFNTLLRSPVLADRFQRVGEYLRFNSSIPPALNEFAILITAREWSAQYEWYAHHRLAMQAGLSPAIAQAVAEGRRPEGMSEDEALVYDFCTELHRTRTVSDATFERAKARFGEQGVVDLIGVSGYYVAVAMVLNVAQVPLPEGVAP 190          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: UPI001C66EF58 (carboxymuconolactone decarboxylase family protein n=1 Tax=Caldovatus sp. SYSU G05006 TaxID=2865671 RepID=UPI001C66EF58)

HSP 1 Score: 215 bits (548), Expect = 2.860e-68
Identity = 105/177 (59.32%), Postives = 130/177 (73.45%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADAVP 540
            RF  + P  M+PEQR+  EAIA+GPRG +RGPFNALLRSP LADRFQ++GE++RF S++P  LNELAIL+ AR WTAQ+EWYAH +LA+ AGL P  A+ IA G RP  +  DE+ VYDFC EL   + V+DAT+  A   FGE+GVVDL+G  GYY  V+MVLNV + PLP    P
Sbjct:   14 RFPPIPPERMSPEQRAVAEAIASGPRGSLRGPFNALLRSPVLADRFQRLGEYLRFRSAIPPALNELAILIAAREWTAQYEWYAHHRLAMQAGLSPAIAEAIAQGRRPEGMSEDEALVYDFCTELHRTRTVSDATFERARARFGEQGVVDLIGVSGYYVAVAMVLNVAQVPLPEGVAP 190          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: UPI00200B50DE (carboxymuconolactone decarboxylase family protein n=1 Tax=Roseomonas sp. NAR14 TaxID=2937791 RepID=UPI00200B50DE)

HSP 1 Score: 214 bits (545), Expect = 9.010e-68
Identity = 109/175 (62.29%), Postives = 127/175 (72.57%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADA 534
            RF  L+P  MT EQR   EAIA GPRGG+RGPF+A LRSP LAD  QKVGE +RF +SLPA LNELAILV AR WT+QFEWYAHR+LAL AGL P   + IAAG RP  +   E A Y+F  EL  D+ V+D T+  A+  FGE GV++L+ ACGYYT+VSM LNV R PLP DA
Sbjct:   14 RFPPLAPERMTAEQRRVAEAIAGGPRGGLRGPFSAWLRSPELADLLQKVGEKVRFRASLPAALNELAILVTARAWTSQFEWYAHRRLALEAGLAPAIVEAIAAGRRPDGMGEAERAAYEFALELHRDRNVSDPTFAAALARFGEAGVIELIAACGYYTLVSMTLNVSRVPLPPDA 188          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A8J4HB31_9PROT (Carboxymuconolactone decarboxylase family protein n=1 Tax=Acidicaldus sp. TaxID=1872105 RepID=A0A8J4HB31_9PROT)

HSP 1 Score: 213 bits (542), Expect = 1.030e-67
Identity = 104/166 (62.65%), Postives = 124/166 (74.70%), Query Frame = 1
Query:   37 MTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADA 534
            MTPEQ++  +AIAAGPRGG+ GPFNA LRSP LADR Q+VGE++RF +SLP RLNELAIL+VAR W AQFEWYAH + A+ AGL P  AD IA   RP  + ADE+ VYDFC ELL  K V+DATY  A   FG +GV+DL+G  GYY MVS+ LNV   P+P D+
Sbjct:    1 MTPEQQAVAKAIAAGPRGGLAGPFNAWLRSPDLADRLQRVGEYVRFKTSLPHRLNELAILLVARAWDAQFEWYAHYQFAMKAGLSPAIADAIAQRRRPAEMSADETVVYDFCNELLTTKHVSDATYNAAAARFGAQGVIDLIGVTGYYVMVSLTLNVAEVPVPPDS 166          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A522D8K2_9CAUL (Carboxymuconolactone decarboxylase n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A522D8K2_9CAUL)

HSP 1 Score: 213 bits (542), Expect = 2.840e-67
Identity = 107/182 (58.79%), Postives = 130/182 (71.43%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPAD-AVPLKAL 552
            RF  L P  MTP Q+   +AI +GPRG +RGPFNA LRSP LADR QKVGE IR+ SSLP RLNE AIL+ ARHW A+FEWYAH  LA+  GL P+ A ++A GLRP  +  DE+A+YDFC EL  D++V+DATY     LFG++GVVDL+G  GYY +VSM LNV     P+D A+PL  L
Sbjct:   22 RFPELRPEQMTPAQKQVADAIVSGPRGSIRGPFNAWLRSPELADRLQKVGEHIRYKSSLPPRLNEFAILITARHWNAKFEWYAHYPLAMQGGLRPEVAADLAKGLRPRGMAEDEAAIYDFCIELRRDRKVSDATYARVQKLFGDQGVVDLIGVNGYYDLVSMTLNVAEVATPSDGALPLPDL 203          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A2V6QT22_9BACT (4-carboxymuconolactone decarboxylase n=4 Tax=Bacteria TaxID=2 RepID=A0A2V6QT22_9BACT)

HSP 1 Score: 212 bits (539), Expect = 3.710e-67
Identity = 107/175 (61.14%), Postives = 127/175 (72.57%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADA 534
            RF SL P  M+P Q+  ++AIA+GPRGGVRGPF  LLRSP LADR QKVGE +RF+SSLPARLNELAIL+ AR W +++EWYAHR  A+  GL    AD++A   RP  +K DE+ VYDFC  L     V DA +G AV L GE+GVVDL+G  GYYT+VSMVLNV   PLPA A
Sbjct:    2 RFPSLEPERMSPAQKRVHDAIASGPRGGVRGPFGVLLRSPELADRVQKVGEHLRFNSSLPARLNELAILINARFWGSKYEWYAHRPFAIKGGLAESIADDLAQNRRPAGMKPDEAIVYDFCTALHRRHAVDDAVFGQAVALLGEQGVVDLIGVSGYYTLVSMVLNVADIPLPAGA 176          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: UPI00131B3EF6 (carboxymuconolactone decarboxylase family protein n=1 Tax=Acidisphaera sp. L21 TaxID=1641851 RepID=UPI00131B3EF6)

HSP 1 Score: 211 bits (537), Expect = 8.510e-67
Identity = 107/177 (60.45%), Postives = 126/177 (71.19%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPADAVP 540
            RF  L+P  MTPEQ     AI  GPRG +RGPF ALLRSP LADR QKVGE+IRF S LPA LNE+AI++  R W AQFE+YAHR+L L AGL+P     IA G RP  + ADE+AVY+F  ELL   QV+DA +    GLFGE GV+DL+GA GYY++VSMVLNVDR+ LP    P
Sbjct:    5 RFPPLAPDAMTPEQSRVAAAIMDGPRGSIRGPFKALLRSPELADRVQKVGEYIRFQSCLPAHLNEMAIMLAGRKWKAQFEFYAHRELGLKAGLNPAIPAAIAVGQRPATMTADEAAVYEFSTELLGSGQVSDANFAAIAGLFGEAGVIDLIGAIGYYSLVSMVLNVDRYKLPEGVEP 181          
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Match: A0A1Q7ICS9_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7ICS9_9BACT)

HSP 1 Score: 209 bits (532), Expect = 5.760e-66
Identity = 109/173 (63.01%), Postives = 126/173 (72.83%), Query Frame = 1
Query:   10 RFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQKVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKAADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGVVDLVGACGYYTMVSMVLNVDRHPLPA 528
            RF  LSP  MT  Q+ AYEAI  GPRGG RGPFNALLRSP LADR QK+GE++RF +SL ARLNELAIL+ AR W +++EW+AHR LAL AGLD   AD IA   RP  +KADE+ VYDFC  L +   V  A +  AV +FGE GV+DLVG  GYYT+VSMVLNV   PLPA
Sbjct:   11 RFPELSPDRMTDAQKRAYEAIVGGPRGGARGPFNALLRSPDLADRVQKLGEYVRFKTSLAARLNELAILINARFWESKYEWHAHRILALKAGLDEAIADAIARKERPATMKADEALVYDFCTALHQRHFVDPALFQRAVAMFGEAGVMDLVGVSGYYTLVSMVLNVAEVPLPA 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14041.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537BVY1_9PROT1.720e-7365.29Carboxymuconolactone decarboxylase family protein ... [more]
A0A2V8F8E9_9BACT2.030e-7061.58Carboxymuconolactone decarboxylase n=1 Tax=Acidoba... [more]
A0A8J2ZDK3_9PROT2.020e-6859.32Carboxymuconolactone decarboxylase n=1 Tax=Caldova... [more]
UPI001C66EF582.860e-6859.32carboxymuconolactone decarboxylase family protein ... [more]
UPI00200B50DE9.010e-6862.29carboxymuconolactone decarboxylase family protein ... [more]
A0A8J4HB31_9PROT1.030e-6762.65Carboxymuconolactone decarboxylase family protein ... [more]
A0A522D8K2_9CAUL2.840e-6758.79Carboxymuconolactone decarboxylase n=1 Tax=Phenylo... [more]
A0A2V6QT22_9BACT3.710e-6761.144-carboxymuconolactone decarboxylase n=4 Tax=Bacte... [more]
UPI00131B3EF68.510e-6760.45carboxymuconolactone decarboxylase family protein ... [more]
A0A1Q7ICS9_9BACT5.760e-6663.01Uncharacterized protein n=2 Tax=unclassified Candi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14041contigP-wetherbeei_contig14041:802..1359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121106.JQKB01000006_gene1309
PFAMsCMD
Model size558
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00938
KEGG koko:K01607
KEGG ReactionR03470
KEGG Pathwayko00362,ko01100,ko01120,ko01220,map00362,map01100,map01120,map01220
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.19e-62
EggNOG OGsCOG2128@1|root,COG2128@2|Bacteria,1NFKC@1224|Proteobacteria,2TQSD@28211|Alphaproteobacteria,2JWRR@204441|Rhodospirillales
EC4.1.1.44
Descriptiondecarboxylase
Cds size558
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186006.4680717-CDS-P-wetherbeei_contig14041:801..13591683186006.4680717-CDS-P-wetherbeei_contig14041:801..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14041 802..1359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14041.2.1prot_P-wetherbeei_contig14041.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14041 802..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14041.2.1

>prot_P-wetherbeei_contig14041.2.1 ID=prot_P-wetherbeei_contig14041.2.1|Name=mRNA_P-wetherbeei_contig14041.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=186bp
MTSRFASLSPSDMTPEQRSAYEAIAAGPRGGVRGPFNALLRSPGLADRFQ
KVGEFIRFHSSLPARLNELAILVVARHWTAQFEWYAHRKLALAAGLDPKA
ADEIAAGLRPGALKADESAVYDFCRELLEDKQVTDATYGTAVGLFGERGV
VDLVGACGYYTMVSMVLNVDRHPLPADAVPLKALA*
back to top

mRNA from alignment at P-wetherbeei_contig14041:802..1359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14041.2.1 ID=mRNA_P-wetherbeei_contig14041.2.1|Name=mRNA_P-wetherbeei_contig14041.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig14041:802..1359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCCCGCTTCGCCTCCCTTTCCCCGTCCGACATGACCCCTGAGCA GCGTTCGGCGTATGAGGCGATCGCCGCGGGCCCGCGCGGCGGCGTACGCG GCCCGTTCAATGCACTGCTGCGCAGCCCGGGCCTCGCAGACCGTTTCCAG AAGGTGGGCGAATTCATACGCTTCCACAGCTCGCTGCCCGCGCGCCTGAA CGAGCTCGCCATCCTGGTCGTGGCGCGCCACTGGACGGCGCAGTTCGAGT GGTACGCGCACCGCAAGCTCGCGCTCGCCGCCGGACTCGACCCGAAGGCC GCCGACGAGATCGCCGCCGGCCTGCGTCCGGGCGCACTGAAGGCCGACGA ATCCGCCGTGTACGATTTCTGTCGTGAATTGCTCGAGGATAAGCAGGTCA CGGACGCAACGTACGGGACCGCGGTGGGACTGTTCGGTGAGCGTGGCGTG GTGGACCTGGTCGGCGCCTGCGGCTACTACACGATGGTATCGATGGTCCT CAATGTGGACCGCCATCCGCTGCCTGCGGACGCCGTGCCGTTGAAGGCGC TGGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14041:802..1359+

>mRNA_P-wetherbeei_contig14041.2.1 ID=mRNA_P-wetherbeei_contig14041.2.1|Name=mRNA_P-wetherbeei_contig14041.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig14041:802..1359+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACATCCCGCTTCGCCTCCCTTTCCCCGTCCGACATGACCCCTGAGCA
GCGTTCGGCGTATGAGGCGATCGCCGCGGGCCCGCGCGGCGGCGTACGCG
GCCCGTTCAATGCACTGCTGCGCAGCCCGGGCCTCGCAGACCGTTTCCAG
AAGGTGGGCGAATTCATACGCTTCCACAGCTCGCTGCCCGCGCGCCTGAA
CGAGCTCGCCATCCTGGTCGTGGCGCGCCACTGGACGGCGCAGTTCGAGT
GGTACGCGCACCGCAAGCTCGCGCTCGCCGCCGGACTCGACCCGAAGGCC
GCCGACGAGATCGCCGCCGGCCTGCGTCCGGGCGCACTGAAGGCCGACGA
ATCCGCCGTGTACGATTTCTGTCGTGAATTGCTCGAGGATAAGCAGGTCA
CGGACGCAACGTACGGGACCGCGGTGGGACTGTTCGGTGAGCGTGGCGTG
GTGGACCTGGTCGGCGCCTGCGGCTACTACACGATGGTATCGATGGTCCT
CAATGTGGACCGCCATCCGCTGCCTGCGGACGCCGTGCCGTTGAAGGCGC
TGGCGTGA
back to top