mRNA_P-wetherbeei_contig1402.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1402.1.1
Unique NamemRNA_P-wetherbeei_contig1402.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A6P5MUE5_ARADU (oil body-associated protein 2A n=3 Tax=Arachis TaxID=3817 RepID=A0A6P5MUE5_ARADU)

HSP 1 Score: 123 bits (308), Expect = 7.940e-33
Identity = 53/97 (54.64%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   16 PGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            PG+ +S+    LD GA ++QS KP+KQFS+HVC F   + D ++Q+ETHHY +++N+D  QC VYDSD A+ARL+GVEYI+S+ +F  LP+ EKKLW
Sbjct:   13 PGQSMSVGQHMLDKGAMMLQSLKPVKQFSHHVCSFAIYSHDMSRQIETHHYCSRLNQDFLQCAVYDSDDANARLLGVEYIISDRIFEDLPDEEKKLW 109          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A175YBS5_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YBS5_DAUCS)

HSP 1 Score: 122 bits (307), Expect = 1.330e-32
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   16 PGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            PG  +S+    LD GA +MQS KP+K+ S HVC F   +DD ++Q+ETHHYV ++NED  QC VYDSD +H RL+GVEYIVS+ +F +LP  E+KLW
Sbjct:   18 PGVPMSMEQHMLDKGAQMMQSLKPIKEMSQHVCTFALYSDDMSRQIETHHYVTRLNEDFLQCAVYDSDDSHGRLIGVEYIVSDKIFENLPPDEQKLW 114          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A4D8Z8F4_SALSN (Uncharacterized protein n=2 Tax=Salvia TaxID=21880 RepID=A0A4D8Z8F4_SALSN)

HSP 1 Score: 121 bits (304), Expect = 2.940e-32
Identity = 54/97 (55.67%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   16 PGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            PG+ +S+    LD GA +MQS  P+KQ S HVC F   + D ++Q+ETHHYV+++N+DV QC VYDSD AH RL+GVEYIVS+++F  LP  E+KLW
Sbjct:   10 PGKAMSMEQHMLDKGAQMMQSLTPIKQMSQHVCTFALYSHDLSRQIETHHYVSRLNQDVLQCAVYDSDNAHGRLIGVEYIVSDTIFESLPPDEQKLW 106          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: W1PNF8_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PNF8_AMBTC)

HSP 1 Score: 120 bits (300), Expect = 1.900e-31
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 1
Query:   13 LPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            +PGE LS+ S+ L+ GA ++QS KP+KQ   HVC F   + D  +Q+  HHYVA+VN+D  QC VYDSD + ARL+GVEYIVS+ +F  LP+ EKKLW
Sbjct:   18 IPGEPLSVESQVLERGAQMLQSLKPVKQIQQHVCSFRLYSHDLTRQIRAHHYVARVNQDFLQCAVYDSDSSDARLIGVEYIVSDRIFESLPDEEKKLW 115          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: D8R837_SELML (Uncharacterized protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R837_SELML)

HSP 1 Score: 118 bits (296), Expect = 6.540e-31
Identity = 50/101 (49.50%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    4 PRELPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            P ++PG+  ++ S+ ++ GA ++QS +P+KQ   H+C F F + D  +Q+ETHHY ++VNED  QCLV+D D + ARL+GVEYIVS+ +F  LP+ EKKLW
Sbjct:   16 PDDVPGKPTTMMSKIMEKGADMLQSLEPVKQIQEHICTFAFYSHDMKRQIETHHYASRVNEDFTQCLVFDRDDSQARLIGVEYIVSDRIFVTLPDEEKKLW 116          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A2C9UF91_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UF91_MANES)

HSP 1 Score: 118 bits (295), Expect = 8.810e-31
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   16 PGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            PG+ +S+    LD GA ++QSFKP+KQ S HVC F   + D ++Q+ETHHYV ++N+D  QC VYD+D ++ RL+GVEYIVS+ +F  LP  E+KLW
Sbjct:   22 PGKPMSMEQHMLDKGAKMLQSFKPIKQISQHVCTFAIYSHDMSRQIETHHYVTRINQDFLQCAVYDTDDSNGRLIGVEYIVSDKIFESLPPEEQKLW 118          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A7I4E3K7_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E3K7_PHYPA)

HSP 1 Score: 117 bits (294), Expect = 9.800e-31
Identity = 50/101 (49.50%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 PRELPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            P ++PG   +L+++A+D GA ++QS +P+K F  HVC +   + D N++++THH+ A++N+D  QC VYDSD+++ARL+GVEY+VSE+VF  LP  EKKLW
Sbjct:   14 PEDVPGGAKTLTAKAVDAGAAMLQSLEPIKAFQQHVCTWAIFSHDMNRKIQTHHHAARLNDDFLQCAVYDSDQSNARLIGVEYVVSENVFKDLPPEEKKLW 114          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A200PML4_9MAGN (Uncharacterized protein n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200PML4_9MAGN)

HSP 1 Score: 114 bits (286), Expect = 1.010e-30
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    4 PRELPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            P  +PG+ L++    LD GA ++QS KP+KQ   HVC F   + D ++Q+ETHHY+ ++N++  QC VYDSD   ARL+GVEYIVS+ +F  LP  E+KLW
Sbjct:   11 PPVVPGKPLTVGQHMLDKGAAMLQSLKPVKQMQQHVCTFALYSHDMSRQIETHHYITRLNQEFLQCAVYDSDAPTARLIGVEYIVSDRIFEELPPDEQKLW 111          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A5N6QAT6_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QAT6_9ROSI)

HSP 1 Score: 117 bits (294), Expect = 1.210e-30
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   16 PGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            PG+ +++    +D GA L+QS KP+KQ + HVC F   + D ++Q+ETHHY+ +VN+D  QC VYD+D AHARL+GVEYIVS+ +F  LP  E+KLW
Sbjct:   21 PGQPMTVEQHMIDKGAQLLQSLKPVKQMNQHVCTFALYSHDMSRQIETHHYLTRVNQDFLQCAVYDTDDAHARLIGVEYIVSDRIFEALPPDEQKLW 117          
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Match: A0A818MAN6_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A818MAN6_9BILA)

HSP 1 Score: 118 bits (295), Expect = 1.300e-30
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   10 ELPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQLETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKKLW 306
            + PG  +++  R LDMGA +   F P+     HVCGF+F + + N+QL  HHY + +N+DV QC++YDSDRA ARL+G+EYI+SE +F  LP  EKKLW
Sbjct:   39 QTPGSKMTMKGRILDMGARMAGHFAPINSIHQHVCGFHFYSGELNRQLIAHHYCSHINQDVRQCVIYDSDRADARLIGIEYIISEKIFNQLPPEEKKLW 137          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1402.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P5MUE5_ARADU7.940e-3354.64oil body-associated protein 2A n=3 Tax=Arachis Tax... [more]
A0A175YBS5_DAUCS1.330e-3255.67Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A4D8Z8F4_SALSN2.940e-3255.67Uncharacterized protein n=2 Tax=Salvia TaxID=21880... [more]
W1PNF8_AMBTC1.900e-3155.10Uncharacterized protein n=1 Tax=Amborella trichopo... [more]
D8R837_SELML6.540e-3149.50Uncharacterized protein n=5 Tax=Selaginella moelle... [more]
A0A2C9UF91_MANES8.810e-3152.58Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
A0A7I4E3K7_PHYPA9.800e-3149.50Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A200PML4_9MAGN1.010e-3049.50Uncharacterized protein n=1 Tax=Macleaya cordata T... [more]
A0A5N6QAT6_9ROSI1.210e-3052.58Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A818MAN6_9BILA1.300e-3050.51Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1402contigP-wetherbeei_contig1402:59..825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog13333.ERN09339
PFAMsDUF1264
Model size309
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.11e-32
EggNOG OGs2CMB5@1|root,2QPUT@2759|Eukaryota,37IV1@33090|Viridiplantae,3GBXP@35493|Streptophyta
DescriptionProtein of unknown function (DUF1264)
Cds size309
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.8260164-CDS-P-wetherbeei_contig1402:58..1771683186005.8260164-CDS-P-wetherbeei_contig1402:58..177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 59..177 -
1683186005.8363023-CDS-P-wetherbeei_contig1402:539..5961683186005.8363023-CDS-P-wetherbeei_contig1402:539..596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 540..596 -
1683186005.8459547-CDS-P-wetherbeei_contig1402:692..8251683186005.8459547-CDS-P-wetherbeei_contig1402:692..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1402 693..825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1402.1.1prot_P-wetherbeei_contig1402.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1402 59..825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1402.1.1

>prot_P-wetherbeei_contig1402.1.1 ID=prot_P-wetherbeei_contig1402.1.1|Name=mRNA_P-wetherbeei_contig1402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MPRELPGEDLSLSSRALDMGAGLMQSFKPMKQFSNHVCGFYFAADDQNKQ
LETHHYVAQVNEDVWQCLVYDSDRAHARLMGVEYIVSESVFTHLPEGEKK
LW*
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mRNA from alignment at P-wetherbeei_contig1402:59..825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1402.1.1 ID=mRNA_P-wetherbeei_contig1402.1.1|Name=mRNA_P-wetherbeei_contig1402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=767bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:59..825- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACGGGAGCTCCCTGGAGAAGACCTTTCGCTATCCTCTCGGGCTCT CGATATGGGGGCGGGTTTGATGCAAAGCTTCAAACCGATGAAACAATTCT CGAATCATGTGTGCGGCTTCTACTTTGCAGCTGGTAAGAACTGCCTTGGG AATCTGCGTCTCACTGCGATGGGCGGCCTAAATTCCTTTTCCTTTTCCCC TTCCCTATCAACCCAAATATTCGTGCTAGACGACCAGAACAAGCAGCTCG AAACGCATCACTACGTCGCCCAAGTAAACGAGGACGGTGAGAGGCCTGGC GAGATAGACAGAAAAACGCAGCATTCACAACTTGGACGATTCCACCCTAT CGCCCTCTGTCTGCACTTTCATGCTGTCCGTGCTTTTCATTCCTTTCTTG TTCGCTTTTCTGCATCATTCAACTCCACTACCCATCCTGCCTGCCTCTGA CCTTGCCTCTTTTCTCGCCTCTTTTGCCTGTCGTGTCGCACGGCCTTTCC ACCGCTGCCACGACAATGACAACGGCGGCGGCGGCGGCGGCGGCGGGGCC GTTCATGCGCACTCATGCTGCATCTTCCGGCTCCGTGCGATGACCCGGAC TGTCCCATTCCGATACCGTCCCGATTCGTCATTTCGTCTTGTCTTCAGTG TGGCAGTGCCTCGTGTACGATAGCGACCGCGCCCACGCCCGCCTGATGGG CGTCGAGTACATCGTCTCGGAAAGTGTCTTCACACACCTTCCCGAGGGCG AGAAAAAGCTCTGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1402:59..825-

>mRNA_P-wetherbeei_contig1402.1.1 ID=mRNA_P-wetherbeei_contig1402.1.1|Name=mRNA_P-wetherbeei_contig1402.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig1402:59..825- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACGGGAGCTCCCTGGAGAAGACCTTTCGCTATCCTCTCGGGCTCT
CGATATGGGGGCGGGTTTGATGCAAAGCTTCAAACCGATGAAACAATTCT
CGAATCATGTGTGCGGCTTCTACTTTGCAGCTGACGACCAGAACAAGCAG
CTCGAAACGCATCACTACGTCGCCCAAGTAAACGAGGACGTGTGGCAGTG
CCTCGTGTACGATAGCGACCGCGCCCACGCCCGCCTGATGGGCGTCGAGT
ACATCGTCTCGGAAAGTGTCTTCACACACCTTCCCGAGGGCGAGAAAAAG
CTCTGGTAA
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