mRNA_P-wetherbeei_contig1401.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1401.1.1
Unique NamemRNA_P-wetherbeei_contig1401.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1401.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1401contigP-wetherbeei_contig1401:371..2955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1262
Hectar predicted targeting categoryother localisation
Exons5
Cds size1260
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.3580341-CDS-P-wetherbeei_contig1401:370..6201683186005.3580341-CDS-P-wetherbeei_contig1401:370..620Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 371..620 -
1683186005.3660975-CDS-P-wetherbeei_contig1401:929..11381683186005.3660975-CDS-P-wetherbeei_contig1401:929..1138Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 930..1138 -
1683186005.3736863-CDS-P-wetherbeei_contig1401:1397..15381683186005.3736863-CDS-P-wetherbeei_contig1401:1397..1538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 1398..1538 -
1683186005.3823404-CDS-P-wetherbeei_contig1401:1896..20011683186005.3823404-CDS-P-wetherbeei_contig1401:1896..2001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 1897..2001 -
1683186005.3933132-CDS-P-wetherbeei_contig1401:2400..29551683186005.3933132-CDS-P-wetherbeei_contig1401:2400..2955Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1401 2401..2955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1401.1.1prot_P-wetherbeei_contig1401.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1401 371..2955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1401.1.1

>prot_P-wetherbeei_contig1401.1.1 ID=prot_P-wetherbeei_contig1401.1.1|Name=mRNA_P-wetherbeei_contig1401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=420bp
AAGTPGSLGRSKRASASASVSASAGMAAEAAAAATAAATEAKDPPSPLRS
RFETLKVSVFETLSLMASPLPTLSPASATELAFDEPTKDNDSTNGCGGGG
DAGATRSGYDCSDDELCPAPPPERERHARRRSEPLRRLLRQSFGEGGGGA
SSAGQRLCRTSNKEVVSLLTLLQVPCEDVPVWAFEDILWADFASSVVLKR
RYTHHALALTHLALYMFELQTSGSGSPDREVTAADVRRLRVVARLEPADI
ECITLPYAEVVLEDGTEVAQRTADIVVVCAPASAPGADDEGPRQPGSGFS
VRDLSPRGENRRYIWLRLAGNDQRGDFVEALDEWYARDSGGSVGDLPAEQ
APEASVLSDIGARRMSNILEASLARWRNDARVEERLGSGQDLLSTQDVRR
GARRLNRHGSGTSSNGSSSA
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mRNA from alignment at P-wetherbeei_contig1401:371..2955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1401.1.1 ID=mRNA_P-wetherbeei_contig1401.1.1|Name=mRNA_P-wetherbeei_contig1401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2585bp|location=Sequence derived from alignment at P-wetherbeei_contig1401:371..2955- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGGACGCCGGGGTCGCTTGGGCGGTCCAAGCGGGCGTCTGCGTC
GGCGTCTGTGTCGGCGTCAGCTGGCATGGCGGCCGAGGCTGCGGCGGCGG
CGACGGCGGCGGCGACGGAGGCGAAGGACCCGCCGTCGCCGCTCCGCTCG
CGGTTCGAGACGCTCAAGGTCTCCGTCTTCGAGACGCTGTCCCTCATGGC
CTCGCCGCTGCCGACGCTGTCGCCGGCGTCGGCCACCGAGCTCGCCTTTG
ACGAGCCCACAAAGGACAACGACTCCACAAACGGCTGTGGCGGCGGCGGC
GATGCCGGCGCCACCCGCAGCGGCTACGACTGCAGCGACGACGAGCTGTG
CCCGGCGCCGCCGCCGGAGCGGGAACGGCACGCTCGCCGGCGGTCCGAGC
CGCTGCGGCGGCTGCTGCGGCAGTCCTTCGGCGAGGGCGGCGGAGGGGCG
TCGTCAGCAGGGCAGCGGCTGTGCCGGACGAGCAACAAAGAGGTGGTATC
GCTGCTGACGCTGCTGCAGGTGCCATGTGAGGACGTCCCCGTCTGGGCCT
TCGAGGTGAGCATTTTTGGTTTTTCCCCCCATTCTATGCTGTCGTGTGCT
GTCACCGTTGCTGCGTTGCAGTAGTAGGCGTCGTCGCCGTTGCCCGAATG
GTGGTGACAGTGCTGTTTGCGGAACGGTGCTGTGCCCTTTTAGCACATCG
GGCGGGTAGGACGAATGCCACCAGTCTACGGAATGAAGGGATAGGTGGCG
GCAGCTGTTTGGGATGGAGTGACTGTGGCTGCTTCAGGTTTTGTGGCTAG
ATGATCGCTTGTGGTTGTAGAGGCAACGGGGTTGGGCAGGCCGAGCCTGT
TGCGGTTGGCCGGGTATCTTGCTCTGCCCGCCCCTTCCTCTCATGTAACC
GCTTCTTGTTTCTTATTATTCTTTTCCCATATCTCCCCCTCCTTTCGCCG
GCAGGACATTCTGTGGGCAGATTTTGCGTCCTCGGTGGTGCTGAAGCGGC
GCTACACGCATCACGCCCTCGCTCTCACCCACCTCGCGCTCTACATGTTC
GAGCTCCAGGTGCGAATCGAATCGAGAGCTCTTTCCTACCGTTTTTGGTT
TGTCTGGATACTGCTGCACGGTTCAGATGATTCTCTTATAAGGGCGTTCG
TGTTTCGCAGCCTTTTGGATCTTTGTGTGAACGCCTTTGTCTTCTGCACC
GTCTCTTCTTATTCTTTTCTCTTTCTCTCATTGAGCACCCGCCGTCATCT
GGTTTCGTCTGTTTTTGAACGCGAAACAGTGTTGACATTCAAGCATATCA
ATTCTTTGGGTCTCCACCGCAACCGCGATCTTGTCGCGCGTTTGCTGGTT
CCTTTGGGTTTTTCCCCTCCCCTTTTGCTGCTGCTGCAATCGCTCGGTCA
TTCTCCGATTATTGCAGACGAGCGGGAGCGGTTCGCCGGACAGGGAGGTG
ACGGCGGCGGACGTGAGGCGGCTGCGGGTGGTGGCGCGCCTCGAGCCCGC
TGACATCGAGTGCATCACGCTGCCCTACGCCGAGGTCGTTCTCGAAGACG
GTACCGAGGTCAGTGAAAGGACGGGCGGTCTTCCCTCGGGTGACCTACAC
TCGGGCTTTTGTGTTTTGCTTTCGGTTTTGGTTGGGGCTTCTCTTTAGGG
GCGTCGTTTTGGGCCAACGACCGGACCGCATTTGACCCGAGAAGCAGCAG
CGAAGGGTGTCTGGTATGGGCATTCTCGCTTGTCTTCATCTTACTCATTT
GGAAACTGCGTGGTCTGAGAGCATATCTCTCTCCTCCCATGTCCTGCCGG
TACGAGAGCGCGTGCAGGTTGCGCAGCGGACGGCGGACATCGTGGTGGTG
TGCGCGCCGGCGTCGGCGCCCGGCGCCGACGACGAGGGTCCGCGGCAGCC
TGGCAGCGGCTTCAGCGTGCGGGACCTGAGCCCGCGCGGGGAGAACCGGC
GCTACATCTGGCTGCGGCTGGCGGGGAATGACCAGCGGGGGGACTTTGTA
GAGGCGCTCGACGAGTGGTACGCCAGGTGAGGGGCAAAAGAATATGGGAG
AGAGGGGAAGTGGGAAGGAAGGAGAAAAGAGTCGGAAAGTTTCTCGACTT
CCGTGCCGCGGCTGCTGCCGCCTCTGCCATTGCCATTTCAGCGGCTGCCG
CATCTATTGTATGCTGCTTGCGCCGCTGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCGCCGCCGTTGATG
GCGCGGTAAATATTTTTGTTGCAACCTCCTCTAAAGCCTGATCGGTTTTC
TGTTATTACACGCCTCGTTCCTTACGCTTTTGCAGGGATTCGGGCGGCAG
CGTGGGCGACCTACCGGCCGAGCAGGCGCCTGAGGCGTCTGTCCTGTCGG
ATATCGGCGCCCGCCGCATGTCCAATATCCTCGAGGCCTCCCTCGCCCGC
TGGCGGAACGACGCGCGGGTCGAGGAGCGCCTCGGCTCCGGCCAGGACCT
CCTCAGCACGCAGGATGTACGGCGCGGGGCACGCCGGTTGAACCGACACG
GGTCGGGCACGTCGAGCAATGGCAGCAGCAGCGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1401:371..2955-

>mRNA_P-wetherbeei_contig1401.1.1 ID=mRNA_P-wetherbeei_contig1401.1.1|Name=mRNA_P-wetherbeei_contig1401.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1260bp|location=Sequence derived from alignment at P-wetherbeei_contig1401:371..2955- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGGACGCCGGGGTCGCTTGGGCGGTCCAAGCGGGCGTCTGCGTC
GGCGTCTGTGTCGGCGTCAGCTGGCATGGCGGCCGAGGCTGCGGCGGCGG
CGACGGCGGCGGCGACGGAGGCGAAGGACCCGCCGTCGCCGCTCCGCTCG
CGGTTCGAGACGCTCAAGGTCTCCGTCTTCGAGACGCTGTCCCTCATGGC
CTCGCCGCTGCCGACGCTGTCGCCGGCGTCGGCCACCGAGCTCGCCTTTG
ACGAGCCCACAAAGGACAACGACTCCACAAACGGCTGTGGCGGCGGCGGC
GATGCCGGCGCCACCCGCAGCGGCTACGACTGCAGCGACGACGAGCTGTG
CCCGGCGCCGCCGCCGGAGCGGGAACGGCACGCTCGCCGGCGGTCCGAGC
CGCTGCGGCGGCTGCTGCGGCAGTCCTTCGGCGAGGGCGGCGGAGGGGCG
TCGTCAGCAGGGCAGCGGCTGTGCCGGACGAGCAACAAAGAGGTGGTATC
GCTGCTGACGCTGCTGCAGGTGCCATGTGAGGACGTCCCCGTCTGGGCCT
TCGAGGACATTCTGTGGGCAGATTTTGCGTCCTCGGTGGTGCTGAAGCGG
CGCTACACGCATCACGCCCTCGCTCTCACCCACCTCGCGCTCTACATGTT
CGAGCTCCAGACGAGCGGGAGCGGTTCGCCGGACAGGGAGGTGACGGCGG
CGGACGTGAGGCGGCTGCGGGTGGTGGCGCGCCTCGAGCCCGCTGACATC
GAGTGCATCACGCTGCCCTACGCCGAGGTCGTTCTCGAAGACGGTACCGA
GGTTGCGCAGCGGACGGCGGACATCGTGGTGGTGTGCGCGCCGGCGTCGG
CGCCCGGCGCCGACGACGAGGGTCCGCGGCAGCCTGGCAGCGGCTTCAGC
GTGCGGGACCTGAGCCCGCGCGGGGAGAACCGGCGCTACATCTGGCTGCG
GCTGGCGGGGAATGACCAGCGGGGGGACTTTGTAGAGGCGCTCGACGAGT
GGTACGCCAGGGATTCGGGCGGCAGCGTGGGCGACCTACCGGCCGAGCAG
GCGCCTGAGGCGTCTGTCCTGTCGGATATCGGCGCCCGCCGCATGTCCAA
TATCCTCGAGGCCTCCCTCGCCCGCTGGCGGAACGACGCGCGGGTCGAGG
AGCGCCTCGGCTCCGGCCAGGACCTCCTCAGCACGCAGGATGTACGGCGC
GGGGCACGCCGGTTGAACCGACACGGGTCGGGCACGTCGAGCAATGGCAG
CAGCAGCGCT
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