mRNA_P-wetherbeei_contig14001.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14001.1.1
Unique NamemRNA_P-wetherbeei_contig14001.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A835YRW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 9.470e-45
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 HPLRMAEWELDVRTHCGFRRMSAGIRFGHDGDLVTDDGLPGNWWFGIGGLHWEVVR-DGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDTADTSYQHR 366
            HPLR AEW +  R   GF+R      F  DG + +     G WWF +GGLHWE+        H++AELHWN+FG++PRM RGTV RDR     +PPWL RPV++TFTG G+G+DTADT+Y+HR
Sbjct:    9 HPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPSATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHR 131          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: D7FGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX5_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.410e-44
Identity = 70/126 (55.56%), Postives = 88/126 (69.84%), Query Frame = 1
Query:    1 HPLRMAEWELDVRTHCGFRRMSAGIRFGHDGDLVTDDGLPGNWWFGIGGLHWEV---VRDG-VLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDTADTSYQHR 366
            HPLR  +W L +R+    RR    + F  +G + ++DG  G WWF +GGL+W+V   +R    + HHKAELHWNVFGS+PRM RGT+ RDR    PLPPWLFRPVV +F G GVG+DTADTSY+HR
Sbjct:   65 HPLRTQDWTLQIRSSPWTRREQE-VTFHRNGTMSSNDGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHR 189          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A0G4EMR7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMR7_VITBC)

HSP 1 Score: 128 bits (321), Expect = 4.470e-35
Identity = 63/122 (51.64%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 HPLRMAEWELDVRTHCGFRRMSAGIRFGHDGDLVTDDGLPGNWWFGIGGLHWEVVRDGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDTADTSYQHR 366
            HPLRM EW+L VR     RR    I F  DG L T DG  G W     G+ WE + D   H + AE+HWNVFGS+PRM +G + RDRR   P+   LFRPV+ TFTG G G DTAD SY+ R
Sbjct:   61 HPLRMEEWKLRVRRGLFRRRSEMRINFRRDGSLQTSDGHKGEWRLDKFGVMWEFLVDNTTHRYMAEVHWNVFGSQPRMYKGVITRDRR--APIRADLFRPVIGTFTGIGCGTDTADVSYRDR 180          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A7S2V1B7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B7_9STRA)

HSP 1 Score: 116 bits (290), Expect = 4.870e-30
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 PLRMAEWELDVRTHCGFRRMSAGIRFGHDG------DLVTDDGLPGNWWFGIGGLHWEVVRDGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDT 342
            PLRM +WE+  RT    R+ S+ I+F H G      DL TD+G  G+W     GL W++ R+GV + + A +H N FG+ P+M RG V+RDR     LPPWLFRPVVATF G GVGEDT
Sbjct:   78 PLRMEKWEIIFRTGLSERKQSS-IQFYHTGGEDDKGDLRTDEGETGDWAMEKLGLQWQIRRNGVAYTYYALVHHNTFGAAPKMFRGVVVRDRFASSFLPPWLFRPVVATFHGHGVGEDT 195          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A4D9CXA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXA1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.870e-18
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  115 LPGNWWFGIGGLHWEVVRDGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDT 342
            L G W +   GL+WE+   G+ + + AEL W+ FG  P+M  G V+R+R  G PLPPWL RPVV TF+G G G DT
Sbjct:   68 LQGKWKYDKYGLNWELEEGGLRYFYHAELIWHSFGDRPKMHCGVVVRNRGPGSPLPPWLLRPVVGTFSGLGNGTDT 143          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: S6BHP4_BABBO (Signal peptide-containing protein n=1 Tax=Babesia bovis TaxID=5865 RepID=S6BHP4_BABBO)

HSP 1 Score: 84.3 bits (207), Expect = 2.000e-17
Identity = 45/118 (38.14%), Postives = 61/118 (51.69%), Query Frame = 1
Query:    1 HPLRMAEWELDVRTHCGF-----RRMSAGIRFGHDGDLVTDDGLPGNWWFGIGGLHWEVVRD---GVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGV 330
            HPLR  +W + ++   GF     +     I F  +G L T  G  G WW+  G ++W++  D    V  +  A+  WN FG    M RG V +DR   G LP +LFRPVVA FTG G+
Sbjct:  121 HPLRHQKWVITLQKKRGFFGLKYQTEQIVIDFMDNGVLKTQQGQNGIWWYEYGNINWKIYMDPSVNVATYFTAQFCWNNFGKSAFMRRGVVYQDRPPNGWLPQYLFRPVVAKFTGEGI 238          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A7S3L6L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6L4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.550e-12
Identity = 48/124 (38.71%), Postives = 63/124 (50.81%), Query Frame = 1
Query:    1 HPLRMAEWELDVRTHCGFRRMSAGIRFGHDG--DLVTDDGLP---GNWWFGIGGLHWEVV---RDGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDTAD 348
            H LR   W+L V+      R      F  +G   +++ D      G W     GL W +    +D V+ H   +L  N FG +P+++RG VLR+ RR      W FRPVVATFTG G GEDTAD
Sbjct:  100 HKLRTDRWQLHVQWRGKRIRERLEFEFSENGFVRMISADNATAAIGQWELASHGLTWTLPMPDQDRVIFH--GDLLLNPFGPQPKIIRGIVLRETRRV-----W-FRPVVATFTGDGTGEDTAD 215          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A7S0CI14_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI14_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.460e-11
Identity = 43/112 (38.39%), Postives = 51/112 (45.54%), Query Frame = 1
Query:  121 GNWWFGIGGLHWEVVRDGVLHHHK------------------------------AELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVATFTGRGVGEDTADTSYQHR 366
            G WW   G + WE+    V+HH K                              AELH N FG +P + +G V RDR R   LP  LFRPVVATF+  GVG+DT    Y HR
Sbjct:  259 GKWWCQHGKVLWEIP---VIHHLKQDELNHNDDDHIKQACIKLSRRPYTRLQFSAELHLNKFGDQPILRKGVVTRDRFRSSFLPHNLFRPVVATFSAVGVGQDTLRLDYTHR 367          
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Match: A0A7S1D458_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D458_CYCTE)

HSP 1 Score: 58.9 bits (141), Expect = 9.990e-8
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  187 HKAELHWNVFGSEPRMLRGTVLRDRR--------RGGPLPPWLFRPVVATFTGRGVGEDTADTSYQHRGFG 375
            + A++  N FG++P+M+RG V  DRR        R   L  W FRPV+ TFT  G+G+DTAD SYQ+R  G
Sbjct:  225 YHADVILNPFGAQPKMVRGIVTCDRRPQQGRRRFRFLSLQCW-FRPVIGTFTAVGIGQDTADLSYQNRPMG 294          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14001.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A835YRW5_9STRA9.470e-4552.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FGX5_ECTSI1.410e-4455.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4EMR7_VITBC4.470e-3551.64Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2V1B7_9STRA4.870e-3050.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9CXA1_9STRA3.870e-1850.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
S6BHP4_BABBO2.000e-1738.14Signal peptide-containing protein n=1 Tax=Babesia ... [more]
A0A7S3L6L4_9STRA3.550e-1238.71Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S0CI14_9STRA2.460e-1138.39Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1D458_CYCTE9.990e-846.48Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14001contigP-wetherbeei_contig14001:168..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FGX5
Model size375
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.98e-42
EggNOG OGs2ETV3@1|root,2SW48@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_000990.1
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.2341263-UTR-P-wetherbeei_contig14001:167..1791683186005.2341263-UTR-P-wetherbeei_contig14001:167..179Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14001 168..179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186005.2536435-CDS-P-wetherbeei_contig14001:179..2881683186005.2536435-CDS-P-wetherbeei_contig14001:179..288Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14001 180..288 +
1683186005.2680933-CDS-P-wetherbeei_contig14001:602..6791683186005.2680933-CDS-P-wetherbeei_contig14001:602..679Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14001 603..679 +
1683186005.2761242-CDS-P-wetherbeei_contig14001:777..9541683186005.2761242-CDS-P-wetherbeei_contig14001:777..954Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14001 778..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14001.1.1prot_P-wetherbeei_contig14001.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14001 180..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14001.1.1

>prot_P-wetherbeei_contig14001.1.1 ID=prot_P-wetherbeei_contig14001.1.1|Name=mRNA_P-wetherbeei_contig14001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MAEWELDVRTHCGFRRMSAGIRFGHDGDLVTDDGLPGNWWFGIGGLHWEV
VRDGVLHHHKAELHWNVFGSEPRMLRGTVLRDRRRGGPLPPWLFRPVVAT
FTGRGVGEDTADTSYQHRGFG
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mRNA from alignment at P-wetherbeei_contig14001:168..954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14001.1.1 ID=mRNA_P-wetherbeei_contig14001.1.1|Name=mRNA_P-wetherbeei_contig14001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=787bp|location=Sequence derived from alignment at P-wetherbeei_contig14001:168..954+ (Phaeothamnion wetherbeei SAG_119_79)
CACCCACTGCGGATGGCGGAGTGGGAGCTCGACGTCCGGACGCACTGTGG ATTCCGACGGATGTCTGCTGGGATCCGTTTCGGCCACGACGGGGACCTCG TCACGGACGACGGCCTTCCGGGTGCGCTTCTTTTTCGTCTGTCGTTTCAT GACGTTCTCATGCCGCTTGTTGGCGCGCGGCGCTGACGCGCGGCGGTGCA CGTTCCCTAGTGAGCGAAGTGAGAGGACGTGGCTGATCGCATTTCGTCAT ACTAGACTAGACTTCAGCGCTATCATTTGCGGCTTTGCTCACCTTCCGCT GCCGTTCGTGACTGAGCCGTCCGACTCCACTTCCTCTGCATCACGTGTCT CTTCCCTGTCCCATGGCTTTGCTGTTTGTCTTTCTTCCGAACCCCTTCTC CCGGCGGCATGTCTTTTATTGACTGGCTACCGCAGGCAATTGGTGGTTCG GCATCGGCGGCCTCCACTGGGAGGTTGTGCGGGACGGAGTGCTGCACCAC CACAAGGCTGAGGTAAGGTTTCTTTCTTTTGAAGCAATTCCTTTTACCTT CCTTGCGGCCGCACTTTTCTTCGAAACGACTTGCAACCCGCCATCAACCC GCCCATGCAGCTGCACTGGAACGTCTTTGGGAGCGAGCCGCGGATGTTGC GCGGCACCGTCCTCCGGGACCGGCGGCGAGGCGGGCCGCTGCCGCCGTGG CTCTTCCGGCCCGTCGTGGCCACCTTCACTGGCCGCGGCGTCGGTGAGGA CACAGCCGACACCTCCTACCAGCACCGCGGCTTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14001:168..954+

>mRNA_P-wetherbeei_contig14001.1.1 ID=mRNA_P-wetherbeei_contig14001.1.1|Name=mRNA_P-wetherbeei_contig14001.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig14001:168..954+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGTGGGAGCTCGACGTCCGGACGCACTGTGGATTCCGACGGAT
GTCTGCTGGGATCCGTTTCGGCCACGACGGGGACCTCGTCACGGACGACG
GCCTTCCGGGCAATTGGTGGTTCGGCATCGGCGGCCTCCACTGGGAGGTT
GTGCGGGACGGAGTGCTGCACCACCACAAGGCTGAGCTGCACTGGAACGT
CTTTGGGAGCGAGCCGCGGATGTTGCGCGGCACCGTCCTCCGGGACCGGC
GGCGAGGCGGGCCGCTGCCGCCGTGGCTCTTCCGGCCCGTCGTGGCCACC
TTCACTGGCCGCGGCGTCGGTGAGGACACAGCCGACACCTCCTACCAGCA
CCGCGGCTTCGGC
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